Chris Barnes
| Snapshot Date: 2018-04-11 16:45:18 -0400 (Wed, 11 Apr 2018) |
| URL: https://git.bioconductor.org/packages/CNVtools |
| Branch: RELEASE_3_6 |
| Last Commit: 9d9a84e |
| Last Changed Date: 2017-10-30 12:39:27 -0400 (Mon, 30 Oct 2017) |
| Back to Multiple platform build/check report for BioC 3.6 |
|
This page was generated on 2018-04-12 13:33:24 -0400 (Thu, 12 Apr 2018).
| Package 268/1472 | Hostname | OS / Arch | INSTALL | BUILD | CHECK | BUILD BIN | ||||||
| CNVtools 1.72.0 Chris Barnes
| malbec1 | Linux (Ubuntu 16.04.1 LTS) / x86_64 | NotNeeded | OK | WARNINGS | | ||||||
| tokay1 | Windows Server 2012 R2 Standard / x64 | NotNeeded | OK | OK | OK | | ||||||
| veracruz1 | OS X 10.11.6 El Capitan / x86_64 | NotNeeded | OK | WARNINGS | [ OK ] | |
| Package: CNVtools |
| Version: 1.72.0 |
| Command: rm -rf CNVtools.buildbin-libdir && mkdir CNVtools.buildbin-libdir && /Users/biocbuild/BBS/utils/build-universal.sh CNVtools_1.72.0.tar.gz /Library/Frameworks/R.framework/Versions/Current/Resources/bin/R CNVtools.buildbin-libdir |
| StartedAt: 2018-04-12 11:17:00 -0400 (Thu, 12 Apr 2018) |
| EndedAt: 2018-04-12 11:17:12 -0400 (Thu, 12 Apr 2018) |
| EllapsedTime: 11.9 seconds |
| RetCode: 0 |
| Status: OK |
| PackageFile: CNVtools_1.72.0.tgz |
| PackageFileSize: 875.3 KiB |
############################################################################## ############################################################################## ### ### Running command: ### ### rm -rf CNVtools.buildbin-libdir && mkdir CNVtools.buildbin-libdir && /Users/biocbuild/BBS/utils/build-universal.sh CNVtools_1.72.0.tar.gz /Library/Frameworks/R.framework/Versions/Current/Resources/bin/R CNVtools.buildbin-libdir ### ############################################################################## ############################################################################## >>>>>>> >>>>>>> INSTALLATION WITH 'R CMD INSTALL --preclean --no-multiarch --library=CNVtools.buildbin-libdir CNVtools_1.72.0.tar.gz' >>>>>>> * installing *source* package ‘CNVtools’ ... ** libs clang++ -I/Library/Frameworks/R.framework/Resources/include -DNDEBUG -I/usr/local/include -fPIC -Wall -g -O2 -c fitmodel.cpp -o fitmodel.o clang++ -I/Library/Frameworks/R.framework/Resources/include -DNDEBUG -I/usr/local/include -fPIC -Wall -g -O2 -c glm_test.cpp -o glm_test.o clang++ -I/Library/Frameworks/R.framework/Resources/include -DNDEBUG -I/usr/local/include -fPIC -Wall -g -O2 -c mla.cpp -o mla.o clang++ -I/Library/Frameworks/R.framework/Resources/include -DNDEBUG -I/usr/local/include -fPIC -Wall -g -O2 -c routine.cpp -o routine.o clang -I/Library/Frameworks/R.framework/Resources/include -DNDEBUG -I/usr/local/include -fPIC -Wall -g -O2 -c zeroin.c -o zeroin.o clang++ -dynamiclib -Wl,-headerpad_max_install_names -undefined dynamic_lookup -single_module -multiply_defined suppress -L/Library/Frameworks/R.framework/Resources/lib -L/usr/local/lib -o CNVtools.so fitmodel.o glm_test.o mla.o routine.o zeroin.o -F/Library/Frameworks/R.framework/.. -framework R -Wl,-framework -Wl,CoreFoundation installing to /Users/biocbuild/bbs-3.6-bioc/meat/CNVtools.buildbin-libdir/CNVtools/libs ** R ** data ** inst ** preparing package for lazy loading ** help *** installing help indices ** building package indices ** installing vignettes ** testing if installed package can be loaded * DONE (CNVtools) >>>>>>> >>>>>>> FIXING LINKS FOR CNVtools.buildbin-libdir/CNVtools/libs//CNVtools.so >>>>>>> install_name_tool -change "/usr/local/lib/libgcc_s.1.dylib" "/Library/Frameworks/R.framework/Versions/3.4/Resources/lib/libgcc_s.1.dylib" "CNVtools.buildbin-libdir/CNVtools/libs//CNVtools.so" install_name_tool -change "/usr/local/lib/libgfortran.3.dylib" "/Library/Frameworks/R.framework/Versions/3.4/Resources/lib/libgfortran.3.dylib" "CNVtools.buildbin-libdir/CNVtools/libs//CNVtools.so" install_name_tool -change "/usr/local/lib/libreadline.5.2.dylib" "/Library/Frameworks/R.framework/Versions/3.4/Resources/lib/libreadline.5.2.dylib" "CNVtools.buildbin-libdir/CNVtools/libs//CNVtools.so" install_name_tool -change "/usr/local/lib/libreadline.dylib" "/Library/Frameworks/R.framework/Versions/3.4/Resources/lib/libreadline.dylib" "CNVtools.buildbin-libdir/CNVtools/libs//CNVtools.so" install_name_tool -change "/usr/local/lib/libquadmath.0.dylib" "/Library/Frameworks/R.framework/Versions/3.4/Resources/lib/libquadmath.0.dylib" "CNVtools.buildbin-libdir/CNVtools/libs//CNVtools.so"