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INSTALL report for CGHbase on tokay1

This page was generated on 2018-04-12 13:19:14 -0400 (Thu, 12 Apr 2018).

Package 203/1472HostnameOS / ArchINSTALLBUILDCHECKBUILD BIN
CGHbase 1.38.0
Mark van de Wiel
Snapshot Date: 2018-04-11 16:45:18 -0400 (Wed, 11 Apr 2018)
URL: https://git.bioconductor.org/packages/CGHbase
Branch: RELEASE_3_6
Last Commit: 2d55022
Last Changed Date: 2017-10-30 12:39:23 -0400 (Mon, 30 Oct 2017)
malbec1 Linux (Ubuntu 16.04.1 LTS) / x86_64  OK  OK  OK UNNEEDED, same version exists in internal repository
tokay1 Windows Server 2012 R2 Standard / x64 [ OK ] OK  WARNINGS  OK UNNEEDED, same version exists in internal repository
veracruz1 OS X 10.11.6 El Capitan / x86_64  OK  OK  OK  OK UNNEEDED, same version exists in internal repository

Summary

Package: CGHbase
Version: 1.38.0
Command: rm -rf CGHbase.buildbin-libdir && mkdir CGHbase.buildbin-libdir && C:\cygwin\bin\curl.exe -O https://malbec1.bioconductor.org/BBS/3.6/bioc/src/contrib/CGHbase_1.38.0.tar.gz && C:\Users\biocbuild\bbs-3.6-bioc\R\bin\R.exe CMD INSTALL --build --library=CGHbase.buildbin-libdir --merge-multiarch CGHbase_1.38.0.tar.gz && C:\Users\biocbuild\bbs-3.6-bioc\R\bin\R.exe CMD INSTALL CGHbase_1.38.0.zip && rm CGHbase_1.38.0.tar.gz CGHbase_1.38.0.zip
StartedAt: 2018-04-11 18:24:10 -0400 (Wed, 11 Apr 2018)
EndedAt: 2018-04-11 18:24:50 -0400 (Wed, 11 Apr 2018)
EllapsedTime: 39.8 seconds
RetCode: 0
Status:  OK  

Command output

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###
### Running command:
###
###   rm -rf CGHbase.buildbin-libdir && mkdir CGHbase.buildbin-libdir  && C:\cygwin\bin\curl.exe -O https://malbec1.bioconductor.org/BBS/3.6/bioc/src/contrib/CGHbase_1.38.0.tar.gz && C:\Users\biocbuild\bbs-3.6-bioc\R\bin\R.exe CMD INSTALL --build --library=CGHbase.buildbin-libdir --merge-multiarch CGHbase_1.38.0.tar.gz && C:\Users\biocbuild\bbs-3.6-bioc\R\bin\R.exe CMD INSTALL CGHbase_1.38.0.zip  && rm CGHbase_1.38.0.tar.gz CGHbase_1.38.0.zip
###
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  % Total    % Received % Xferd  Average Speed   Time    Time     Time  Current
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  0     0    0     0    0     0      0      0 --:--:-- --:--:-- --:--:--     0
100  850k  100  850k    0     0  26.5M      0 --:--:-- --:--:-- --:--:-- 29.6M

install for i386

* installing *source* package 'CGHbase' ...
** R
** data
** preparing package for lazy loading
** help
*** installing help indices
  converting help for package 'CGHbase'
    finding HTML links ... done
    CGHbase-package                         html  
    Wilting                                 html  
    WiltingCalled                           html  
    WiltingNorm                             html  
    WiltingRaw                              html  
    WiltingRegions                          html  
    WiltingSeg                              html  
    avedist                                 html  
    chromosomes                             html  
    class.cghCall                           html  
Rd warning: C:/Users/biocbuild/bbs-3.6-bioc/tmpdir/Rtmp2LuCg7/R.INSTALL41c1188623/CGHbase/man/class.cghCall.Rd:42: missing file link 'eSet'
Rd warning: C:/Users/biocbuild/bbs-3.6-bioc/tmpdir/Rtmp2LuCg7/R.INSTALL41c1188623/CGHbase/man/class.cghCall.Rd:56: missing file link 'eSet'
Rd warning: C:/Users/biocbuild/bbs-3.6-bioc/tmpdir/Rtmp2LuCg7/R.INSTALL41c1188623/CGHbase/man/class.cghCall.Rd:95: missing file link 'AssayData-class'
Rd warning: C:/Users/biocbuild/bbs-3.6-bioc/tmpdir/Rtmp2LuCg7/R.INSTALL41c1188623/CGHbase/man/class.cghCall.Rd:96: missing file link 'eSet'
Rd warning: C:/Users/biocbuild/bbs-3.6-bioc/tmpdir/Rtmp2LuCg7/R.INSTALL41c1188623/CGHbase/man/class.cghCall.Rd:97: missing file link 'AnnotatedDataFrame'
Rd warning: C:/Users/biocbuild/bbs-3.6-bioc/tmpdir/Rtmp2LuCg7/R.INSTALL41c1188623/CGHbase/man/class.cghCall.Rd:100: missing file link 'eSet'
Rd warning: C:/Users/biocbuild/bbs-3.6-bioc/tmpdir/Rtmp2LuCg7/R.INSTALL41c1188623/CGHbase/man/class.cghCall.Rd:101: missing file link 'eSet'
Rd warning: C:/Users/biocbuild/bbs-3.6-bioc/tmpdir/Rtmp2LuCg7/R.INSTALL41c1188623/CGHbase/man/class.cghCall.Rd:137: missing file link 'eSet'
Rd warning: C:/Users/biocbuild/bbs-3.6-bioc/tmpdir/Rtmp2LuCg7/R.INSTALL41c1188623/CGHbase/man/class.cghCall.Rd:143: missing file link 'eSet-class'
    class.cghRaw                            html  
Rd warning: C:/Users/biocbuild/bbs-3.6-bioc/tmpdir/Rtmp2LuCg7/R.INSTALL41c1188623/CGHbase/man/class.cghRaw.Rd:25: missing file link 'eSet'
Rd warning: C:/Users/biocbuild/bbs-3.6-bioc/tmpdir/Rtmp2LuCg7/R.INSTALL41c1188623/CGHbase/man/class.cghRaw.Rd:30: missing file link 'eSet'
Rd warning: C:/Users/biocbuild/bbs-3.6-bioc/tmpdir/Rtmp2LuCg7/R.INSTALL41c1188623/CGHbase/man/class.cghRaw.Rd:62: missing file link 'AssayData-class'
Rd warning: C:/Users/biocbuild/bbs-3.6-bioc/tmpdir/Rtmp2LuCg7/R.INSTALL41c1188623/CGHbase/man/class.cghRaw.Rd:63: missing file link 'eSet'
Rd warning: C:/Users/biocbuild/bbs-3.6-bioc/tmpdir/Rtmp2LuCg7/R.INSTALL41c1188623/CGHbase/man/class.cghRaw.Rd:64: missing file link 'AnnotatedDataFrame'
Rd warning: C:/Users/biocbuild/bbs-3.6-bioc/tmpdir/Rtmp2LuCg7/R.INSTALL41c1188623/CGHbase/man/class.cghRaw.Rd:67: missing file link 'eSet'
Rd warning: C:/Users/biocbuild/bbs-3.6-bioc/tmpdir/Rtmp2LuCg7/R.INSTALL41c1188623/CGHbase/man/class.cghRaw.Rd:68: missing file link 'eSet'
Rd warning: C:/Users/biocbuild/bbs-3.6-bioc/tmpdir/Rtmp2LuCg7/R.INSTALL41c1188623/CGHbase/man/class.cghRaw.Rd:82: missing file link 'eSet'
Rd warning: C:/Users/biocbuild/bbs-3.6-bioc/tmpdir/Rtmp2LuCg7/R.INSTALL41c1188623/CGHbase/man/class.cghRaw.Rd:88: missing file link 'eSet-class'
    class.cghRegions                        html  
    class.cghSeg                            html  
Rd warning: C:/Users/biocbuild/bbs-3.6-bioc/tmpdir/Rtmp2LuCg7/R.INSTALL41c1188623/CGHbase/man/class.cghSeg.Rd:27: missing file link 'eSet'
Rd warning: C:/Users/biocbuild/bbs-3.6-bioc/tmpdir/Rtmp2LuCg7/R.INSTALL41c1188623/CGHbase/man/class.cghSeg.Rd:33: missing file link 'eSet'
Rd warning: C:/Users/biocbuild/bbs-3.6-bioc/tmpdir/Rtmp2LuCg7/R.INSTALL41c1188623/CGHbase/man/class.cghSeg.Rd:60: missing file link 'AssayData-class'
Rd warning: C:/Users/biocbuild/bbs-3.6-bioc/tmpdir/Rtmp2LuCg7/R.INSTALL41c1188623/CGHbase/man/class.cghSeg.Rd:61: missing file link 'eSet'
Rd warning: C:/Users/biocbuild/bbs-3.6-bioc/tmpdir/Rtmp2LuCg7/R.INSTALL41c1188623/CGHbase/man/class.cghSeg.Rd:62: missing file link 'AnnotatedDataFrame'
Rd warning: C:/Users/biocbuild/bbs-3.6-bioc/tmpdir/Rtmp2LuCg7/R.INSTALL41c1188623/CGHbase/man/class.cghSeg.Rd:65: missing file link 'eSet'
Rd warning: C:/Users/biocbuild/bbs-3.6-bioc/tmpdir/Rtmp2LuCg7/R.INSTALL41c1188623/CGHbase/man/class.cghSeg.Rd:66: missing file link 'eSet'
Rd warning: C:/Users/biocbuild/bbs-3.6-bioc/tmpdir/Rtmp2LuCg7/R.INSTALL41c1188623/CGHbase/man/class.cghSeg.Rd:85: missing file link 'eSet'
Rd warning: C:/Users/biocbuild/bbs-3.6-bioc/tmpdir/Rtmp2LuCg7/R.INSTALL41c1188623/CGHbase/man/class.cghSeg.Rd:91: missing file link 'eSet-class'
    copynumber                              html  
    frequencyPlot                           html  
    frequencyPlotCalls                      html  
    make_cghRaw                             html  
    plot                                    html  
    probloss                                html  
    regions                                 html  
    summaryPlot                             html  
** building package indices
** testing if installed package can be loaded
In R CMD INSTALL

install for x64

* installing *source* package 'CGHbase' ...
** testing if installed package can be loaded
* MD5 sums
packaged installation of 'CGHbase' as CGHbase_1.38.0.zip
* DONE (CGHbase)
In R CMD INSTALL
In R CMD INSTALL
* installing to library 'C:/Users/biocbuild/bbs-3.6-bioc/R/library'
package 'CGHbase' successfully unpacked and MD5 sums checked
In R CMD INSTALL