R version 3.4.4 (2018-03-15) -- "Someone to Lean On"
Copyright (C) 2018 The R Foundation for Statistical Computing
Platform: x86_64-pc-linux-gnu (64-bit)
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> BiocGenerics:::testPackage("BiocParallel")
Warning in result_fetch(res@ptr, n = n) :
Don't need to call dbFetch() for statements, only for queries
Warning in result_fetch(res@ptr, n = n) :
Don't need to call dbFetch() for statements, only for queries
Warning in result_fetch(res@ptr, n = n) :
Don't need to call dbFetch() for statements, only for queries
Warning in result_fetch(res@ptr, n = n) :
Don't need to call dbFetch() for statements, only for queries
Warning in result_fetch(res@ptr, n = n) :
Don't need to call dbFetch() for statements, only for queries
Warning in result_fetch(res@ptr, n = n) :
Don't need to call dbFetch() for statements, only for queries
Warning in result_fetch(res@ptr, n = n) :
Don't need to call dbFetch() for statements, only for queries
Warning in result_fetch(res@ptr, n = n) :
Don't need to call dbFetch() for statements, only for queries
Warning in result_fetch(res@ptr, n = n) :
Don't need to call dbFetch() for statements, only for queries
Warning in result_fetch(res@ptr, n = n) :
Don't need to call dbFetch() for statements, only for queries
Warning in result_fetch(res@ptr, n = n) :
Don't need to call dbFetch() for statements, only for queries
Warning in result_fetch(res@ptr, n = n) :
Don't need to call dbFetch() for statements, only for queries
Warning in result_fetch(res@ptr, n = n) :
Don't need to call dbFetch() for statements, only for queries
Warning in result_fetch(res@ptr, n = n) :
Don't need to call dbFetch() for statements, only for queries
Warning in result_fetch(res@ptr, n = n) :
Don't need to call dbFetch() for statements, only for queries
Warning in result_fetch(res@ptr, n = n) :
Don't need to call dbFetch() for statements, only for queries
Warning in result_fetch(res@ptr, n = n) :
Don't need to call dbFetch() for statements, only for queries
Warning in result_fetch(res@ptr, n = n) :
Don't need to call dbFetch() for statements, only for queries
Warning in result_fetch(res@ptr, n = n) :
Don't need to call dbFetch() for statements, only for queries
Warning in result_fetch(res@ptr, n = n) :
Don't need to call dbFetch() for statements, only for queries
Warning in result_fetch(res@ptr, n = n) :
Don't need to call dbFetch() for statements, only for queries
Warning in result_fetch(res@ptr, n = n) :
Don't need to call dbFetch() for statements, only for queries
Warning in result_fetch(res@ptr, n = n) :
Don't need to call dbFetch() for statements, only for queries
Warning in result_fetch(res@ptr, n = n) :
Don't need to call dbFetch() for statements, only for queries
Warning in result_fetch(res@ptr, n = n) :
Don't need to call dbFetch() for statements, only for queries
Warning in result_fetch(res@ptr, n = n) :
Don't need to call dbFetch() for statements, only for queries
Warning in result_fetch(res@ptr, n = n) :
Don't need to call dbFetch() for statements, only for queries
Warning in result_fetch(res@ptr, n = n) :
Don't need to call dbFetch() for statements, only for queries
Timing stopped at: 0.004 0 0
Error in DEACTIVATED("MPI tests not run") : MPI tests not run
In addition: Warning messages:
1: In result_fetch(res@ptr, n = n) :
Don't need to call dbFetch() for statements, only for queries
2: In result_fetch(res@ptr, n = n) :
Don't need to call dbFetch() for statements, only for queries
3: In result_fetch(res@ptr, n = n) :
Don't need to call dbFetch() for statements, only for queries
4: In result_fetch(res@ptr, n = n) :
Don't need to call dbFetch() for statements, only for queries
5: In result_fetch(res@ptr, n = n) :
Don't need to call dbFetch() for statements, only for queries
6: In result_fetch(res@ptr, n = n) :
Don't need to call dbFetch() for statements, only for queries
7: In result_fetch(res@ptr, n = n) :
Don't need to call dbFetch() for statements, only for queries
8: In result_fetch(res@ptr, n = n) :
Don't need to call dbFetch() for statements, only for queries
9: In result_fetch(res@ptr, n = n) :
Don't need to call dbFetch() for statements, only for queries
10: In result_fetch(res@ptr, n = n) :
Don't need to call dbFetch() for statements, only for queries
--------------------------------------------------------------------------
[[11525,1],0]: A high-performance Open MPI point-to-point messaging module
was unable to find any relevant network interfaces:
Module: OpenFabrics (openib)
Host: malbec1
Another transport will be used instead, although this may result in
lower performance.
--------------------------------------------------------------------------
Timing stopped at: 0.08 0.024 0.216
Error in DEACTIVATED("MPI tests not run") : MPI tests not run
test_bpiterate_Params
chunks greater than number of workers
ith param
ith param
ith param
chunks less than number of workers [1]
ith param
ith param
ith param
chunks less than number of workers [2]
ith param
ith param
cleanup
test_bpiterate_Params DONE
test_bpiterate_REDUCE
setup
ith param
no REDUCE
REDUCE
'reduce.in.order' FALSE [1]
'reduce.in.order' FALSE [2]
'reduce.in.order' TRUE [1]
'reduce.in.order' TRUE [2]
ith param
no REDUCE
REDUCE
'reduce.in.order' FALSE [1]
'reduce.in.order' FALSE [2]
'reduce.in.order' TRUE [1]
'reduce.in.order' TRUE [2]
cleanup
test_bpiterate_REDUCE DONE
test_bplapply_Params
setup
sqrt
serial
snow
dopar
batchjobs
mc
empty input
serial
snow
dopar
batchjobs
mc
BatchJobs
Warning in result_fetch(res@ptr, n = n) :
Don't need to call dbFetch() for statements, only for queries
Warning in result_fetch(res@ptr, n = n) :
Don't need to call dbFetch() for statements, only for queries
Warning in result_fetch(res@ptr, n = n) :
Don't need to call dbFetch() for statements, only for queries
Warning in result_fetch(res@ptr, n = n) :
Don't need to call dbFetch() for statements, only for queries
Warning in result_fetch(res@ptr, n = n) :
Don't need to call dbFetch() for statements, only for queries
Warning in result_fetch(res@ptr, n = n) :
Don't need to call dbFetch() for statements, only for queries
Warning in result_fetch(res@ptr, n = n) :
Don't need to call dbFetch() for statements, only for queries
Warning in result_fetch(res@ptr, n = n) :
Don't need to call dbFetch() for statements, only for queries
Warning in result_fetch(res@ptr, n = n) :
Don't need to call dbFetch() for statements, only for queries
Warning in result_fetch(res@ptr, n = n) :
Don't need to call dbFetch() for statements, only for queries
Warning in result_fetch(res@ptr, n = n) :
Don't need to call dbFetch() for statements, only for queries
Warning in result_fetch(res@ptr, n = n) :
Don't need to call dbFetch() for statements, only for queries
Warning in result_fetch(res@ptr, n = n) :
Don't need to call dbFetch() for statements, only for queries
Warning in result_fetch(res@ptr, n = n) :
Don't need to call dbFetch() for statements, only for queries
Warning in result_fetch(res@ptr, n = n) :
Don't need to call dbFetch() for statements, only for queries
cleanup
test_bplapply_Params DONE
test_bplapply_symbols
setup
serial
snow
dopar
mc
cleanup
test_bplapply_symbols DONE
Warning in result_fetch(res@ptr, n = n) :
Don't need to call dbFetch() for statements, only for queries
Warning in result_fetch(res@ptr, n = n) :
Don't need to call dbFetch() for statements, only for queries
Warning in result_fetch(res@ptr, n = n) :
Don't need to call dbFetch() for statements, only for queries
Warning in result_fetch(res@ptr, n = n) :
Don't need to call dbFetch() for statements, only for queries
Warning in result_fetch(res@ptr, n = n) :
Don't need to call dbFetch() for statements, only for queries
Warning in result_fetch(res@ptr, n = n) :
Don't need to call dbFetch() for statements, only for queries
Warning in result_fetch(res@ptr, n = n) :
Don't need to call dbFetch() for statements, only for queries
Warning in result_fetch(res@ptr, n = n) :
Don't need to call dbFetch() for statements, only for queries
Warning in result_fetch(res@ptr, n = n) :
Don't need to call dbFetch() for statements, only for queries
Warning in result_fetch(res@ptr, n = n) :
Don't need to call dbFetch() for statements, only for queries
Warning in result_fetch(res@ptr, n = n) :
Don't need to call dbFetch() for statements, only for queries
Warning in result_fetch(res@ptr, n = n) :
Don't need to call dbFetch() for statements, only for queries
Warning in result_fetch(res@ptr, n = n) :
Don't need to call dbFetch() for statements, only for queries
Warning in result_fetch(res@ptr, n = n) :
Don't need to call dbFetch() for statements, only for queries
Warning in result_fetch(res@ptr, n = n) :
Don't need to call dbFetch() for statements, only for queries
Warning in result_fetch(res@ptr, n = n) :
Don't need to call dbFetch() for statements, only for queries
Warning in result_fetch(res@ptr, n = n) :
Don't need to call dbFetch() for statements, only for queries
Warning in result_fetch(res@ptr, n = n) :
Don't need to call dbFetch() for statements, only for queries
Warning in result_fetch(res@ptr, n = n) :
Don't need to call dbFetch() for statements, only for queries
Warning in result_fetch(res@ptr, n = n) :
Don't need to call dbFetch() for statements, only for queries
Warning in result_fetch(res@ptr, n = n) :
Don't need to call dbFetch() for statements, only for queries
Warning in result_fetch(res@ptr, n = n) :
Don't need to call dbFetch() for statements, only for queries
Warning in result_fetch(res@ptr, n = n) :
Don't need to call dbFetch() for statements, only for queries
Warning in result_fetch(res@ptr, n = n) :
Don't need to call dbFetch() for statements, only for queries
Warning in result_fetch(res@ptr, n = n) :
Don't need to call dbFetch() for statements, only for queries
Warning in result_fetch(res@ptr, n = n) :
Don't need to call dbFetch() for statements, only for queries
Warning in result_fetch(res@ptr, n = n) :
Don't need to call dbFetch() for statements, only for queries
Warning in result_fetch(res@ptr, n = n) :
Don't need to call dbFetch() for statements, only for queries
Warning in result_fetch(res@ptr, n = n) :
Don't need to call dbFetch() for statements, only for queries
Warning in result_fetch(res@ptr, n = n) :
Don't need to call dbFetch() for statements, only for queries
resuming previous calculation ...
resuming previous calculation ...
resuming previous calculation ...
resuming previous calculation ...
resuming previous calculation ...
resuming previous calculation ...
Warning in result_fetch(res@ptr, n = n) :
Don't need to call dbFetch() for statements, only for queries
Warning in result_fetch(res@ptr, n = n) :
Don't need to call dbFetch() for statements, only for queries
Warning in result_fetch(res@ptr, n = n) :
Don't need to call dbFetch() for statements, only for queries
Warning in result_fetch(res@ptr, n = n) :
Don't need to call dbFetch() for statements, only for queries
Warning in result_fetch(res@ptr, n = n) :
Don't need to call dbFetch() for statements, only for queries
Warning in result_fetch(res@ptr, n = n) :
Don't need to call dbFetch() for statements, only for queries
Warning in result_fetch(res@ptr, n = n) :
Don't need to call dbFetch() for statements, only for queries
Warning in result_fetch(res@ptr, n = n) :
Don't need to call dbFetch() for statements, only for queries
Warning in result_fetch(res@ptr, n = n) :
Don't need to call dbFetch() for statements, only for queries
Warning in result_fetch(res@ptr, n = n) :
Don't need to call dbFetch() for statements, only for queries
Warning in result_fetch(res@ptr, n = n) :
Don't need to call dbFetch() for statements, only for queries
Warning in result_fetch(res@ptr, n = n) :
Don't need to call dbFetch() for statements, only for queries
Warning in result_fetch(res@ptr, n = n) :
Don't need to call dbFetch() for statements, only for queries
Warning in result_fetch(res@ptr, n = n) :
Don't need to call dbFetch() for statements, only for queries
Warning in result_fetch(res@ptr, n = n) :
Don't need to call dbFetch() for statements, only for queries
Warning in result_fetch(res@ptr, n = n) :
Don't need to call dbFetch() for statements, only for queries
Warning in result_fetch(res@ptr, n = n) :
Don't need to call dbFetch() for statements, only for queries
Warning in result_fetch(res@ptr, n = n) :
Don't need to call dbFetch() for statements, only for queries
Warning in result_fetch(res@ptr, n = n) :
Don't need to call dbFetch() for statements, only for queries
resuming previous calculation ...
Warning in result_fetch(res@ptr, n = n) :
Don't need to call dbFetch() for statements, only for queries
Warning in result_fetch(res@ptr, n = n) :
Don't need to call dbFetch() for statements, only for queries
Warning in result_fetch(res@ptr, n = n) :
Don't need to call dbFetch() for statements, only for queries
Warning in result_fetch(res@ptr, n = n) :
Don't need to call dbFetch() for statements, only for queries
Warning in result_fetch(res@ptr, n = n) :
Don't need to call dbFetch() for statements, only for queries
Warning in result_fetch(res@ptr, n = n) :
Don't need to call dbFetch() for statements, only for queries
Warning in result_fetch(res@ptr, n = n) :
Don't need to call dbFetch() for statements, only for queries
Warning in result_fetch(res@ptr, n = n) :
Don't need to call dbFetch() for statements, only for queries
Warning in result_fetch(res@ptr, n = n) :
Don't need to call dbFetch() for statements, only for queries
Warning in result_fetch(res@ptr, n = n) :
Don't need to call dbFetch() for statements, only for queries
resuming previous calculation ...
Warning in result_fetch(res@ptr, n = n) :
Don't need to call dbFetch() for statements, only for queries
Warning in result_fetch(res@ptr, n = n) :
Don't need to call dbFetch() for statements, only for queries
Warning in result_fetch(res@ptr, n = n) :
Don't need to call dbFetch() for statements, only for queries
Warning in result_fetch(res@ptr, n = n) :
Don't need to call dbFetch() for statements, only for queries
Warning in result_fetch(res@ptr, n = n) :
Don't need to call dbFetch() for statements, only for queries
Warning in result_fetch(res@ptr, n = n) :
Don't need to call dbFetch() for statements, only for queries
Warning in result_fetch(res@ptr, n = n) :
Don't need to call dbFetch() for statements, only for queries
Warning in result_fetch(res@ptr, n = n) :
Don't need to call dbFetch() for statements, only for queries
Warning in result_fetch(res@ptr, n = n) :
Don't need to call dbFetch() for statements, only for queries
Warning in result_fetch(res@ptr, n = n) :
Don't need to call dbFetch() for statements, only for queries
resuming previous calculation ...
resuming previous calculation ...
resuming previous calculation ...
resuming previous calculation ...
resuming previous calculation ...
resuming previous calculation ...
resuming previous calculation ...
resuming previous calculation ...
resuming previous calculation ...
resuming previous calculation ...
resuming previous calculation ...
resuming previous calculation ...
Warning in result_fetch(res@ptr, n = n) :
Don't need to call dbFetch() for statements, only for queries
Warning in result_fetch(res@ptr, n = n) :
Don't need to call dbFetch() for statements, only for queries
Warning in result_fetch(res@ptr, n = n) :
Don't need to call dbFetch() for statements, only for queries
Warning in result_fetch(res@ptr, n = n) :
Don't need to call dbFetch() for statements, only for queries
Warning in result_fetch(res@ptr, n = n) :
Don't need to call dbFetch() for statements, only for queries
Warning in result_fetch(res@ptr, n = n) :
Don't need to call dbFetch() for statements, only for queries
Warning in result_fetch(res@ptr, n = n) :
Don't need to call dbFetch() for statements, only for queries
Warning in result_fetch(res@ptr, n = n) :
Don't need to call dbFetch() for statements, only for queries
Warning in result_fetch(res@ptr, n = n) :
Don't need to call dbFetch() for statements, only for queries
Warning in result_fetch(res@ptr, n = n) :
Don't need to call dbFetch() for statements, only for queries
Warning in result_fetch(res@ptr, n = n) :
Don't need to call dbFetch() for statements, only for queries
Warning in result_fetch(res@ptr, n = n) :
Don't need to call dbFetch() for statements, only for queries
Warning in result_fetch(res@ptr, n = n) :
Don't need to call dbFetch() for statements, only for queries
Warning in result_fetch(res@ptr, n = n) :
Don't need to call dbFetch() for statements, only for queries
Warning in result_fetch(res@ptr, n = n) :
Don't need to call dbFetch() for statements, only for queries
resuming previous calculation ...
resuming previous calculation ...
Warning in result_fetch(res@ptr, n = n) :
Don't need to call dbFetch() for statements, only for queries
Warning in result_fetch(res@ptr, n = n) :
Don't need to call dbFetch() for statements, only for queries
Warning in result_fetch(res@ptr, n = n) :
Don't need to call dbFetch() for statements, only for queries
Warning in result_fetch(res@ptr, n = n) :
Don't need to call dbFetch() for statements, only for queries
Warning in result_fetch(res@ptr, n = n) :
Don't need to call dbFetch() for statements, only for queries
Warning in result_fetch(res@ptr, n = n) :
Don't need to call dbFetch() for statements, only for queries
Warning in result_fetch(res@ptr, n = n) :
Don't need to call dbFetch() for statements, only for queries
Warning in result_fetch(res@ptr, n = n) :
Don't need to call dbFetch() for statements, only for queries
Warning in result_fetch(res@ptr, n = n) :
Don't need to call dbFetch() for statements, only for queries
Warning in result_fetch(res@ptr, n = n) :
Don't need to call dbFetch() for statements, only for queries
resuming previous calculation ...
resuming previous calculation ...
Warning in result_fetch(res@ptr, n = n) :
Don't need to call dbFetch() for statements, only for queries
Warning in result_fetch(res@ptr, n = n) :
Don't need to call dbFetch() for statements, only for queries
Warning in result_fetch(res@ptr, n = n) :
Don't need to call dbFetch() for statements, only for queries
Warning in result_fetch(res@ptr, n = n) :
Don't need to call dbFetch() for statements, only for queries
Warning in result_fetch(res@ptr, n = n) :
Don't need to call dbFetch() for statements, only for queries
Warning in result_fetch(res@ptr, n = n) :
Don't need to call dbFetch() for statements, only for queries
Warning in result_fetch(res@ptr, n = n) :
Don't need to call dbFetch() for statements, only for queries
Warning in result_fetch(res@ptr, n = n) :
Don't need to call dbFetch() for statements, only for queries
Warning in result_fetch(res@ptr, n = n) :
Don't need to call dbFetch() for statements, only for queries
Warning in result_fetch(res@ptr, n = n) :
Don't need to call dbFetch() for statements, only for queries
Warning in result_fetch(res@ptr, n = n) :
Don't need to call dbFetch() for statements, only for queries
Warning in result_fetch(res@ptr, n = n) :
Don't need to call dbFetch() for statements, only for queries
Warning in result_fetch(res@ptr, n = n) :
Don't need to call dbFetch() for statements, only for queries
Warning in result_fetch(res@ptr, n = n) :
Don't need to call dbFetch() for statements, only for queries
Warning in result_fetch(res@ptr, n = n) :
Don't need to call dbFetch() for statements, only for queries
Warning in result_fetch(res@ptr, n = n) :
Don't need to call dbFetch() for statements, only for queries
Warning in result_fetch(res@ptr, n = n) :
Don't need to call dbFetch() for statements, only for queries
Warning in result_fetch(res@ptr, n = n) :
Don't need to call dbFetch() for statements, only for queries
Warning in result_fetch(res@ptr, n = n) :
Don't need to call dbFetch() for statements, only for queries
Warning in result_fetch(res@ptr, n = n) :
Don't need to call dbFetch() for statements, only for queries
Warning in result_fetch(res@ptr, n = n) :
Don't need to call dbFetch() for statements, only for queries
Warning in result_fetch(res@ptr, n = n) :
Don't need to call dbFetch() for statements, only for queries
Warning in result_fetch(res@ptr, n = n) :
Don't need to call dbFetch() for statements, only for queries
Warning in result_fetch(res@ptr, n = n) :
Don't need to call dbFetch() for statements, only for queries
Warning in result_fetch(res@ptr, n = n) :
Don't need to call dbFetch() for statements, only for queries
Warning in result_fetch(res@ptr, n = n) :
Don't need to call dbFetch() for statements, only for queries
Warning in result_fetch(res@ptr, n = n) :
Don't need to call dbFetch() for statements, only for queries
Warning in result_fetch(res@ptr, n = n) :
Don't need to call dbFetch() for statements, only for queries
Warning in result_fetch(res@ptr, n = n) :
Don't need to call dbFetch() for statements, only for queries
RUNIT TEST PROTOCOL -- Wed Apr 11 21:50:48 2018
***********************************************
Number of test functions: 41
Number of deactivated test functions: 2
Number of errors: 0
Number of failures: 0
1 Test Suite :
BiocParallel RUnit Tests - 41 test functions, 0 errors, 0 failures
Number of test functions: 41
Number of deactivated test functions: 2
Number of errors: 0
Number of failures: 0
>
> proc.time()
user system elapsed
29.912 2.376 86.718
