Catalina A. Vallejos
| Snapshot Date: 2018-04-11 16:45:18 -0400 (Wed, 11 Apr 2018) |
| URL: https://git.bioconductor.org/packages/BASiCS |
| Branch: RELEASE_3_6 |
| Last Commit: dba7914 |
| Last Changed Date: 2018-03-18 15:01:01 -0400 (Sun, 18 Mar 2018) |
| Back to Multiple platform build/check report for BioC 3.6 |
|
This page was generated on 2018-04-12 13:45:47 -0400 (Thu, 12 Apr 2018).
| Package 93/1472 | Hostname | OS / Arch | INSTALL | BUILD | CHECK | BUILD BIN | ||||||
| BASiCS 1.0.1 Catalina A. Vallejos
| malbec1 | Linux (Ubuntu 16.04.1 LTS) / x86_64 | OK | OK | OK | | ||||||
| tokay1 | Windows Server 2012 R2 Standard / x64 | OK | OK | OK | OK | | ||||||
| veracruz1 | OS X 10.11.6 El Capitan / x86_64 | OK | OK | OK | [ OK ] | |
| Package: BASiCS |
| Version: 1.0.1 |
| Command: rm -rf BASiCS.buildbin-libdir && mkdir BASiCS.buildbin-libdir && /Users/biocbuild/BBS/utils/build-universal.sh BASiCS_1.0.1.tar.gz /Library/Frameworks/R.framework/Versions/Current/Resources/bin/R BASiCS.buildbin-libdir |
| StartedAt: 2018-04-12 11:08:25 -0400 (Thu, 12 Apr 2018) |
| EndedAt: 2018-04-12 11:09:15 -0400 (Thu, 12 Apr 2018) |
| EllapsedTime: 49.4 seconds |
| RetCode: 0 |
| Status: OK |
| PackageFile: BASiCS_1.0.1.tgz |
| PackageFileSize: 2.906 MiB |
##############################################################################
##############################################################################
###
### Running command:
###
### rm -rf BASiCS.buildbin-libdir && mkdir BASiCS.buildbin-libdir && /Users/biocbuild/BBS/utils/build-universal.sh BASiCS_1.0.1.tar.gz /Library/Frameworks/R.framework/Versions/Current/Resources/bin/R BASiCS.buildbin-libdir
###
##############################################################################
##############################################################################
>>>>>>>
>>>>>>> INSTALLATION WITH 'R CMD INSTALL --preclean --no-multiarch --library=BASiCS.buildbin-libdir BASiCS_1.0.1.tar.gz'
>>>>>>>
* installing *source* package ‘BASiCS’ ...
** libs
clang++ -I/Library/Frameworks/R.framework/Resources/include -DNDEBUG -I"/Library/Frameworks/R.framework/Versions/3.4/Resources/library/Rcpp/include" -I"/Library/Frameworks/R.framework/Versions/3.4/Resources/library/RcppArmadillo/include" -I/usr/local/include -fPIC -Wall -g -O2 -c BASiCS_CPPcode.cpp -o BASiCS_CPPcode.o
In file included from BASiCS_CPPcode.cpp:12:
In file included from /Library/Frameworks/R.framework/Versions/3.4/Resources/library/RcppArmadillo/include/RcppArmadillo.h:31:
In file included from /Library/Frameworks/R.framework/Versions/3.4/Resources/library/RcppArmadillo/include/RcppArmadilloForward.h:26:
In file included from /Library/Frameworks/R.framework/Versions/3.4/Resources/library/Rcpp/include/RcppCommon.h:138:
/Library/Frameworks/R.framework/Versions/3.4/Resources/library/Rcpp/include/Rcpp/exceptions.h:106:53: warning: all paths through this function will call itself [-Winfinite-recursion]
inline void warning(const std::string& message) { // #nocov start
^
1 warning generated.
clang++ -I/Library/Frameworks/R.framework/Resources/include -DNDEBUG -I"/Library/Frameworks/R.framework/Versions/3.4/Resources/library/Rcpp/include" -I"/Library/Frameworks/R.framework/Versions/3.4/Resources/library/RcppArmadillo/include" -I/usr/local/include -fPIC -Wall -g -O2 -c RcppExports.cpp -o RcppExports.o
clang++ -dynamiclib -Wl,-headerpad_max_install_names -undefined dynamic_lookup -single_module -multiply_defined suppress -L/Library/Frameworks/R.framework/Resources/lib -L/usr/local/lib -o BASiCS.so BASiCS_CPPcode.o RcppExports.o -L/Library/Frameworks/R.framework/Resources/lib -lRlapack -L/Library/Frameworks/R.framework/Resources/lib -lRblas -L/usr/local/gfortran/lib/gcc/x86_64-apple-darwin15/6.1.0 -L/usr/local/gfortran/lib -lgfortran -lquadmath -lm -F/Library/Frameworks/R.framework/.. -framework R -Wl,-framework -Wl,CoreFoundation
installing to /Users/biocbuild/bbs-3.6-bioc/meat/BASiCS.buildbin-libdir/BASiCS/libs
** R
** data
** inst
** preparing package for lazy loading
** help
*** installing help indices
** building package indices
** installing vignettes
** testing if installed package can be loaded
* DONE (BASiCS)
>>>>>>>
>>>>>>> FIXING LINKS FOR BASiCS.buildbin-libdir/BASiCS/libs//BASiCS.so
>>>>>>>
install_name_tool -change "/usr/local/lib/libgcc_s.1.dylib" "/Library/Frameworks/R.framework/Versions/3.4/Resources/lib/libgcc_s.1.dylib" "BASiCS.buildbin-libdir/BASiCS/libs//BASiCS.so"
install_name_tool -change "/usr/local/lib/libgfortran.3.dylib" "/Library/Frameworks/R.framework/Versions/3.4/Resources/lib/libgfortran.3.dylib" "BASiCS.buildbin-libdir/BASiCS/libs//BASiCS.so"
install_name_tool -change "/usr/local/lib/libreadline.5.2.dylib" "/Library/Frameworks/R.framework/Versions/3.4/Resources/lib/libreadline.5.2.dylib" "BASiCS.buildbin-libdir/BASiCS/libs//BASiCS.so"
install_name_tool -change "/usr/local/lib/libreadline.dylib" "/Library/Frameworks/R.framework/Versions/3.4/Resources/lib/libreadline.dylib" "BASiCS.buildbin-libdir/BASiCS/libs//BASiCS.so"
install_name_tool -change "/usr/local/lib/libquadmath.0.dylib" "/Library/Frameworks/R.framework/Versions/3.4/Resources/lib/libquadmath.0.dylib" "BASiCS.buildbin-libdir/BASiCS/libs//BASiCS.so"
install_name_tool -change "/usr/local/gfortran/lib/libgfortran.3.dylib" "/Library/Frameworks/R.framework/Versions/3.4/Resources/lib/libgfortran.3.dylib" "BASiCS.buildbin-libdir/BASiCS/libs//BASiCS.so"
install_name_tool -change "/usr/local/gfortran/lib/libquadmath.0.dylib" "/Library/Frameworks/R.framework/Versions/3.4/Resources/lib/libquadmath.0.dylib" "BASiCS.buildbin-libdir/BASiCS/libs//BASiCS.so"