Davide Risso
| Snapshot Date: 2018-04-11 16:45:18 -0400 (Wed, 11 Apr 2018) |
| URL: https://git.bioconductor.org/packages/zinbwave |
| Branch: RELEASE_3_6 |
| Last Commit: ace352e |
| Last Changed Date: 2017-10-30 12:41:31 -0400 (Mon, 30 Oct 2017) |
| Back to Multiple platform build/check report for BioC 3.6 |
|
This page was generated on 2018-04-12 13:30:00 -0400 (Thu, 12 Apr 2018).
| Package 1471/1472 | Hostname | OS / Arch | INSTALL | BUILD | CHECK | BUILD BIN | ||||||
| zinbwave 1.0.0 Davide Risso
| malbec1 | Linux (Ubuntu 16.04.1 LTS) / x86_64 | OK | OK | OK | | ||||||
| tokay1 | Windows Server 2012 R2 Standard / x64 | [ OK ] | OK | WARNINGS | OK | | ||||||
| veracruz1 | OS X 10.11.6 El Capitan / x86_64 | OK | OK | OK | OK | |
| Package: zinbwave |
| Version: 1.0.0 |
| Command: rm -rf zinbwave.buildbin-libdir && mkdir zinbwave.buildbin-libdir && C:\cygwin\bin\curl.exe -O https://malbec1.bioconductor.org/BBS/3.6/bioc/src/contrib/zinbwave_1.0.0.tar.gz && C:\Users\biocbuild\bbs-3.6-bioc\R\bin\R.exe CMD INSTALL --build --library=zinbwave.buildbin-libdir --merge-multiarch zinbwave_1.0.0.tar.gz && C:\Users\biocbuild\bbs-3.6-bioc\R\bin\R.exe CMD INSTALL zinbwave_1.0.0.zip && rm zinbwave_1.0.0.tar.gz zinbwave_1.0.0.zip |
| StartedAt: 2018-04-11 18:41:39 -0400 (Wed, 11 Apr 2018) |
| EndedAt: 2018-04-11 18:43:35 -0400 (Wed, 11 Apr 2018) |
| EllapsedTime: 116.5 seconds |
| RetCode: 0 |
| Status: OK |
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### Running command:
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### rm -rf zinbwave.buildbin-libdir && mkdir zinbwave.buildbin-libdir && C:\cygwin\bin\curl.exe -O https://malbec1.bioconductor.org/BBS/3.6/bioc/src/contrib/zinbwave_1.0.0.tar.gz && C:\Users\biocbuild\bbs-3.6-bioc\R\bin\R.exe CMD INSTALL --build --library=zinbwave.buildbin-libdir --merge-multiarch zinbwave_1.0.0.tar.gz && C:\Users\biocbuild\bbs-3.6-bioc\R\bin\R.exe CMD INSTALL zinbwave_1.0.0.zip && rm zinbwave_1.0.0.tar.gz zinbwave_1.0.0.zip
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install for i386
* installing *source* package 'zinbwave' ...
** R
** data
*** moving datasets to lazyload DB
** inst
** preparing package for lazy loading
** help
*** installing help indices
converting help for package 'zinbwave'
finding HTML links ... done
ZinbModel-class html
computeDevianceResiduals html
computeObservationalWeights html
getAlpha_mu html
getAlpha_pi html
getBeta_mu html
getBeta_pi html
getEpsilon_W html
getEpsilon_alpha html
getEpsilon_beta_mu html
getEpsilon_beta_pi html
getEpsilon_gamma_mu html
getEpsilon_gamma_pi html
getEpsilon_zeta html
getGamma_mu html
getGamma_pi html
getLogMu html
getLogitPi html
getMu html
getPhi html
getPi html
getTheta html
getV_mu html
getV_pi html
getW html
getX_mu html
getX_pi html
getZeta html
glmWeightedF html
Rd warning: C:/Users/biocbuild/bbs-3.6-bioc/tmpdir/RtmpKKcfe4/R.INSTALL107c6b9b7bbe/zinbwave/man/glmWeightedF.Rd:35: missing file link 'glmLRT'
Rd warning: C:/Users/biocbuild/bbs-3.6-bioc/tmpdir/RtmpKKcfe4/R.INSTALL107c6b9b7bbe/zinbwave/man/glmWeightedF.Rd:50: missing file link 'glmLRT'
imputeZeros html
independentFiltering html
Rd warning: C:/Users/biocbuild/bbs-3.6-bioc/tmpdir/RtmpKKcfe4/R.INSTALL107c6b9b7bbe/zinbwave/man/independentFiltering.Rd:19: missing file link 'glmLRT'
loglik html
nFactors html
nFeatures html
nParams html
nSamples html
orthogonalizeTraceNorm html
penalty html
pvalueAdjustment html
solveRidgeRegression html
toydata html
zinb.loglik html
zinb.loglik.dispersion html
zinb.loglik.dispersion.gradient html
zinb.loglik.matrix html
zinb.loglik.regression html
zinb.loglik.regression.gradient html
zinb.regression.parseModel html
zinbAIC html
zinbBIC html
zinbFit html
Rd warning: C:/Users/biocbuild/bbs-3.6-bioc/tmpdir/RtmpKKcfe4/R.INSTALL107c6b9b7bbe/zinbwave/man/zinbFit.Rd:52: missing file link 'bpparam'
Rd warning: C:/Users/biocbuild/bbs-3.6-bioc/tmpdir/RtmpKKcfe4/R.INSTALL107c6b9b7bbe/zinbwave/man/zinbFit.Rd:74: missing file link 'SummarizedExperiment'
zinbInitialize html
Rd warning: C:/Users/biocbuild/bbs-3.6-bioc/tmpdir/RtmpKKcfe4/R.INSTALL107c6b9b7bbe/zinbwave/man/zinbInitialize.Rd:19: missing file link 'bpparam'
zinbModel html
zinbOptimize html
Rd warning: C:/Users/biocbuild/bbs-3.6-bioc/tmpdir/RtmpKKcfe4/R.INSTALL107c6b9b7bbe/zinbwave/man/zinbOptimize.Rd:28: missing file link 'bpparam'
zinbOptimizeDispersion html
Rd warning: C:/Users/biocbuild/bbs-3.6-bioc/tmpdir/RtmpKKcfe4/R.INSTALL107c6b9b7bbe/zinbwave/man/zinbOptimizeDispersion.Rd:27: missing file link 'bpparam'
zinbSim html
zinbwave html
Rd warning: C:/Users/biocbuild/bbs-3.6-bioc/tmpdir/RtmpKKcfe4/R.INSTALL107c6b9b7bbe/zinbwave/man/zinbwave.Rd:52: missing file link 'bpparam'
Rd warning: C:/Users/biocbuild/bbs-3.6-bioc/tmpdir/RtmpKKcfe4/R.INSTALL107c6b9b7bbe/zinbwave/man/zinbwave.Rd:89: missing file link 'SummarizedExperiment'
** building package indices
** installing vignettes
** testing if installed package can be loaded
In R CMD INSTALL
install for x64
* installing *source* package 'zinbwave' ...
** testing if installed package can be loaded
* MD5 sums
packaged installation of 'zinbwave' as zinbwave_1.0.0.zip
* DONE (zinbwave)
In R CMD INSTALL
In R CMD INSTALL
* installing to library 'C:/Users/biocbuild/bbs-3.6-bioc/R/library'
package 'zinbwave' successfully unpacked and MD5 sums checked
In R CMD INSTALL