Package: variancePartition

Version: 1.8.1

Command: rm -rf variancePartition.buildbin-libdir variancePartition.Rcheck && mkdir variancePartition.buildbin-libdir variancePartition.Rcheck && C:\Users\biocbuild\bbs-3.6-bioc\R\bin\R.exe CMD INSTALL --build --merge-multiarch --library=variancePartition.buildbin-libdir variancePartition_1.8.1.tar.gz >variancePartition.Rcheck\00install.out 2>&1 && cp variancePartition.Rcheck\00install.out variancePartition-install.out && C:\Users\biocbuild\bbs-3.6-bioc\R\bin\R.exe CMD check --library=variancePartition.buildbin-libdir --install="check:variancePartition-install.out" --force-multiarch --no-vignettes --timings variancePartition_1.8.1.tar.gz

StartedAt: 2018-04-12 03:46:04 -0400 (Thu, 12 Apr 2018)

EndedAt: 2018-04-12 03:54:19 -0400 (Thu, 12 Apr 2018)

EllapsedTime: 494.1 seconds

RetCode: 0

Status:  OK

CheckDir: variancePartition.Rcheck

Warnings: 0

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### Running command:
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###   rm -rf variancePartition.buildbin-libdir variancePartition.Rcheck && mkdir variancePartition.buildbin-libdir variancePartition.Rcheck && C:\Users\biocbuild\bbs-3.6-bioc\R\bin\R.exe CMD INSTALL --build --merge-multiarch --library=variancePartition.buildbin-libdir variancePartition_1.8.1.tar.gz >variancePartition.Rcheck\00install.out 2>&1 && cp variancePartition.Rcheck\00install.out variancePartition-install.out  &&  C:\Users\biocbuild\bbs-3.6-bioc\R\bin\R.exe CMD check --library=variancePartition.buildbin-libdir --install="check:variancePartition-install.out" --force-multiarch --no-vignettes --timings variancePartition_1.8.1.tar.gz
###
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* using log directory 'C:/Users/biocbuild/bbs-3.6-bioc/meat/variancePartition.Rcheck'
* using R version 3.4.4 (2018-03-15)
* using platform: x86_64-w64-mingw32 (64-bit)
* using session charset: ISO8859-1
* using option '--no-vignettes'
* checking for file 'variancePartition/DESCRIPTION' ... OK
* checking extension type ... Package
* this is package 'variancePartition' version '1.8.1'
* checking package namespace information ... OK
* checking package dependencies ... OK
* checking if this is a source package ... OK
* checking if there is a namespace ... OK
* checking for hidden files and directories ... OK
* checking for portable file names ... OK
* checking whether package 'variancePartition' can be installed ... OK
* checking installed package size ... OK
* checking package directory ... OK
* checking 'build' directory ... OK
* checking DESCRIPTION meta-information ... OK
* checking top-level files ... OK
* checking for left-over files ... OK
* checking index information ... OK
* checking package subdirectories ... OK
* checking R files for non-ASCII characters ... OK
* checking R files for syntax errors ... OK
* loading checks for arch 'i386'
** checking whether the package can be loaded ... OK
** checking whether the package can be loaded with stated dependencies ... OK
** checking whether the package can be unloaded cleanly ... OK
** checking whether the namespace can be loaded with stated dependencies ... OK
** checking whether the namespace can be unloaded cleanly ... OK
** checking loading without being on the library search path ... OK
* loading checks for arch 'x64'
** checking whether the package can be loaded ... OK
** checking whether the package can be loaded with stated dependencies ... OK
** checking whether the package can be unloaded cleanly ... OK
** checking whether the namespace can be loaded with stated dependencies ... OK
** checking whether the namespace can be unloaded cleanly ... OK
** checking loading without being on the library search path ... OK
* checking dependencies in R code ... OK
* checking S3 generic/method consistency ... OK
* checking replacement functions ... OK
* checking foreign function calls ... OK
* checking R code for possible problems ... OK
* checking Rd files ... OK
* checking Rd metadata ... OK
* checking Rd cross-references ... OK
* checking for missing documentation entries ... OK
* checking for code/documentation mismatches ... OK
* checking Rd \usage sections ... OK
* checking Rd contents ... OK
* checking for unstated dependencies in examples ... OK
* checking contents of 'data' directory ... OK
* checking data for non-ASCII characters ... OK
* checking data for ASCII and uncompressed saves ... OK
* checking installed files from 'inst/doc' ... OK
* checking files in 'vignettes' ... OK
* checking examples ...
** running examples for arch 'i386' ... OK
Examples with CPU or elapsed time > 5s
                                user system elapsed
fitVarPartModel-method         21.82   3.66   37.49
extractVarPart                 11.54   1.22   26.31
getVarianceComponents           3.74   1.67   12.86
varPartConfInf                  4.93   0.02   20.31
residuals-VarParFitList-method  2.27   0.42   11.31
fitExtractVarPartModel-method   1.33   0.20   22.05
plotCorrStructure               1.18   0.06   11.00
plotPercentBars                 0.95   0.00   12.84
sortCols-method                 0.55   0.12   11.06
plotVarPart-method              0.51   0.03   12.27
** running examples for arch 'x64' ... OK
Examples with CPU or elapsed time > 5s
                                user system elapsed
fitVarPartModel-method         25.13   1.62   40.48
extractVarPart                 14.98   0.96   29.44
getVarianceComponents           5.81   0.70   15.78
varPartConfInf                  4.82   0.00   22.78
residuals-VarParFitList-method  3.53   0.30   12.50
fitExtractVarPartModel-method   1.70   0.04   21.08
plotCorrStructure               1.58   0.04   11.55
plotPercentBars                 1.16   0.04   15.28
sortCols-method                 0.61   0.05   15.23
plotVarPart-method              0.64   0.01   13.96
* checking for unstated dependencies in vignettes ... OK
* checking package vignettes in 'inst/doc' ... OK
* checking running R code from vignettes ... SKIPPED
* checking re-building of vignette outputs ... SKIPPED
* checking PDF version of manual ... OK
* DONE

Status: OK

install for i386

* installing *source* package 'variancePartition' ...
** R
** data
** inst
** preparing package for lazy loading
** help
*** installing help indices
  converting help for package 'variancePartition'
    finding HTML links ... done
    ESS-method                              html  
    as.matrix-varPartResults-method         html  
    calcVarPart-method                      html  
    canCorPairs                             html  
    colinearityScore                        html  
    extractVarPart                          html  
    fitExtractVarPartModel-method           html  
    fitVarPartModel-method                  html  
    getVarianceComponents                   html  
    ggColorHue                              html  
    plotCorrMatrix                          html  
    plotCorrStructure                       html  
    plotPercentBars                         html  
    plotStratify                            html  
    plotStratifyBy                          html  
    plotVarPart-method                      html  
    residuals-VarParFitList-method          html  
    sortCols-method                         html  
    varPartConfInf                          html  
    varPartData                             html  
** building package indices
** installing vignettes
** testing if installed package can be loaded
In R CMD INSTALL

install for x64

* installing *source* package 'variancePartition' ...
** testing if installed package can be loaded
* MD5 sums
packaged installation of 'variancePartition' as variancePartition_1.8.1.zip
* DONE (variancePartition)
In R CMD INSTALL
In R CMD INSTALL