Package: supraHex

Version: 1.16.0

Command: /Library/Frameworks/R.framework/Versions/Current/Resources/bin/R CMD check --no-vignettes --timings supraHex_1.16.0.tar.gz

StartedAt: 2018-04-12 10:06:18 -0400 (Thu, 12 Apr 2018)

EndedAt: 2018-04-12 10:07:21 -0400 (Thu, 12 Apr 2018)

EllapsedTime: 62.7 seconds

RetCode: 0

Status:  OK

CheckDir: supraHex.Rcheck

Warnings: 0

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### Running command:
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###   /Library/Frameworks/R.framework/Versions/Current/Resources/bin/R CMD check --no-vignettes --timings supraHex_1.16.0.tar.gz
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* using log directory ‘/Users/biocbuild/bbs-3.6-bioc/meat/supraHex.Rcheck’
* using R version 3.4.4 (2018-03-15)
* using platform: x86_64-apple-darwin15.6.0 (64-bit)
* using session charset: UTF-8
* using option ‘--no-vignettes’
* checking for file ‘supraHex/DESCRIPTION’ ... OK
* checking extension type ... Package
* this is package ‘supraHex’ version ‘1.16.0’
* checking package namespace information ... OK
* checking package dependencies ... OK
* checking if this is a source package ... OK
* checking if there is a namespace ... OK
* checking for hidden files and directories ... OK
* checking for portable file names ... OK
* checking for sufficient/correct file permissions ... OK
* checking whether package ‘supraHex’ can be installed ... OK
* checking installed package size ... OK
* checking package directory ... OK
* checking ‘build’ directory ... OK
* checking DESCRIPTION meta-information ... OK
* checking top-level files ... OK
* checking for left-over files ... OK
* checking index information ... OK
* checking package subdirectories ... OK
* checking R files for non-ASCII characters ... OK
* checking R files for syntax errors ... OK
* checking whether the package can be loaded ... OK
* checking whether the package can be loaded with stated dependencies ... OK
* checking whether the package can be unloaded cleanly ... OK
* checking whether the namespace can be loaded with stated dependencies ... OK
* checking whether the namespace can be unloaded cleanly ... OK
* checking dependencies in R code ... OK
* checking S3 generic/method consistency ... OK
* checking replacement functions ... OK
* checking foreign function calls ... OK
* checking R code for possible problems ... OK
* checking Rd files ... OK
* checking Rd metadata ... OK
* checking Rd cross-references ... OK
* checking for missing documentation entries ... OK
* checking for code/documentation mismatches ... OK
* checking Rd \usage sections ... OK
* checking Rd contents ... OK
* checking for unstated dependencies in examples ... OK
* checking contents of ‘data’ directory ... OK
* checking data for non-ASCII characters ... OK
* checking data for ASCII and uncompressed saves ... OK
* checking sizes of PDF files under ‘inst/doc’ ... OK
* checking installed files from ‘inst/doc’ ... OK
* checking files in ‘vignettes’ ... OK
* checking examples ... OK
* checking for unstated dependencies in vignettes ... OK
* checking package vignettes in ‘inst/doc’ ... OK
* checking running R code from vignettes ... SKIPPED
* checking re-building of vignette outputs ... SKIPPED
* checking PDF version of manual ... OK
* DONE

Status: OK

* installing *source* package ‘supraHex’ ...
** R
** data
** inst
** preparing package for lazy loading
** help
*** installing help indices
** building package indices
** installing vignettes
** testing if installed package can be loaded
* DONE (supraHex)

name	user	system	elapsed
sBMH	0.369	0.010	0.386
sCompReorder	1.520	0.024	1.588
sDistance	0.106	0.004	0.110
sDmat	0.130	0.003	0.136
sDmatCluster	0.264	0.007	0.273
sDmatMinima	0.148	0.003	0.154
sHexDist	0.004	0.001	0.004
sHexGrid	0.003	0.000	0.003
sHexGridVariant	0.005	0.001	0.006
sHexPolygon	0.003	0.000	0.003
sInitial	0.003	0.000	0.003
sMapOverlay	0.475	0.009	0.486
sNeighAny	0.006	0.001	0.007
sNeighDirect	0.005	0.000	0.005
sPipeline	1.810	0.027	1.909
sTopology	0.022	0.006	0.028
sTrainBatch	0.048	0.001	0.050
sTrainSeq	0.357	0.006	0.376
sTrainology	0.004	0.000	0.004
sWriteData	0.304	0.006	0.317
visColoralpha	0.006	0.000	0.007
visColorbar	0.034	0.000	0.034
visColormap	0.005	0.000	0.005
visCompReorder	1.044	0.039	1.116
visDmatCluster	0.330	0.031	0.371
visDmatHeatmap	0.213	0.002	0.223
visHeatmap	0.097	0.001	0.099
visHeatmapAdv	1.189	0.006	1.246
visHexAnimate	0.002	0.000	0.003
visHexBarplot	0.768	0.027	0.818
visHexComp	0.123	0.003	0.130
visHexGrid	0.117	0.003	0.122
visHexMapping	1.261	0.057	1.337
visHexMulComp	0.848	0.024	0.891
visHexPattern	1.513	0.077	1.623
visKernels	0.011	0.003	0.016
visTreeBSclust	0.909	0.003	0.933
visTreeBootstrap	0.745	0.004	0.758
visVp	0.021	0.006	0.028