Package: stepNorm

Version: 1.50.0

Command: rm -rf stepNorm.buildbin-libdir stepNorm.Rcheck && mkdir stepNorm.buildbin-libdir stepNorm.Rcheck && C:\Users\biocbuild\bbs-3.6-bioc\R\bin\R.exe CMD INSTALL --build --merge-multiarch --library=stepNorm.buildbin-libdir stepNorm_1.50.0.tar.gz >stepNorm.Rcheck\00install.out 2>&1 && cp stepNorm.Rcheck\00install.out stepNorm-install.out && C:\Users\biocbuild\bbs-3.6-bioc\R\bin\R.exe CMD check --library=stepNorm.buildbin-libdir --install="check:stepNorm-install.out" --force-multiarch --no-vignettes --timings stepNorm_1.50.0.tar.gz

StartedAt: 2018-04-12 03:28:09 -0400 (Thu, 12 Apr 2018)

EndedAt: 2018-04-12 03:30:35 -0400 (Thu, 12 Apr 2018)

EllapsedTime: 146.5 seconds

RetCode: 0

Status:  OK

CheckDir: stepNorm.Rcheck

Warnings: 0

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### Running command:
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###   rm -rf stepNorm.buildbin-libdir stepNorm.Rcheck && mkdir stepNorm.buildbin-libdir stepNorm.Rcheck && C:\Users\biocbuild\bbs-3.6-bioc\R\bin\R.exe CMD INSTALL --build --merge-multiarch --library=stepNorm.buildbin-libdir stepNorm_1.50.0.tar.gz >stepNorm.Rcheck\00install.out 2>&1 && cp stepNorm.Rcheck\00install.out stepNorm-install.out  &&  C:\Users\biocbuild\bbs-3.6-bioc\R\bin\R.exe CMD check --library=stepNorm.buildbin-libdir --install="check:stepNorm-install.out" --force-multiarch --no-vignettes --timings stepNorm_1.50.0.tar.gz
###
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* using log directory 'C:/Users/biocbuild/bbs-3.6-bioc/meat/stepNorm.Rcheck'
* using R version 3.4.4 (2018-03-15)
* using platform: x86_64-w64-mingw32 (64-bit)
* using session charset: ISO8859-1
* using option '--no-vignettes'
* checking for file 'stepNorm/DESCRIPTION' ... OK
* this is package 'stepNorm' version '1.50.0'
* checking package namespace information ... OK
* checking package dependencies ... OK
* checking if this is a source package ... OK
* checking if there is a namespace ... OK
* checking for hidden files and directories ... OK
* checking for portable file names ... OK
* checking whether package 'stepNorm' can be installed ... OK
* checking installed package size ... OK
* checking package directory ... OK
* checking DESCRIPTION meta-information ... NOTE
Packages listed in more than one of Depends, Imports, Suggests, Enhances:
  'marray' 'methods'
A package should be listed in only one of these fields.
* checking top-level files ... OK
* checking for left-over files ... OK
* checking index information ... OK
* checking package subdirectories ... OK
* checking R files for non-ASCII characters ... OK
* checking R files for syntax errors ... OK
* loading checks for arch 'i386'
** checking whether the package can be loaded ... OK
** checking whether the package can be loaded with stated dependencies ... OK
** checking whether the package can be unloaded cleanly ... OK
** checking whether the namespace can be loaded with stated dependencies ... OK
** checking whether the namespace can be unloaded cleanly ... OK
** checking loading without being on the library search path ... OK
* loading checks for arch 'x64'
** checking whether the package can be loaded ... OK
** checking whether the package can be loaded with stated dependencies ... OK
** checking whether the package can be unloaded cleanly ... OK
** checking whether the namespace can be loaded with stated dependencies ... OK
** checking whether the namespace can be unloaded cleanly ... OK
** checking loading without being on the library search path ... OK
* checking dependencies in R code ... OK
* checking S3 generic/method consistency ... OK
* checking replacement functions ... OK
* checking foreign function calls ... OK
* checking R code for possible problems ... NOTE
loess2Dfit: warning in loess.control(trace.hat = "approximate",
  iteration = 5, surface = "direct"): partial argument match of
  'iteration' to 'iterations'
loessfit: warning in loess.control(trace.hat = "approximate", iteration
  = 5, surface = "direct"): partial argument match of 'iteration' to
  'iterations'
* checking Rd files ... OK
* checking Rd metadata ... OK
* checking Rd cross-references ... OK
* checking for missing documentation entries ... OK
* checking for code/documentation mismatches ... OK
* checking Rd \usage sections ... OK
* checking Rd contents ... OK
* checking for unstated dependencies in examples ... OK
* checking examples ...
** running examples for arch 'i386' ... OK
Examples with CPU or elapsed time > 5s
                user system elapsed
fitWithin      22.56   0.00   22.56
stepWithinNorm 21.53   0.06   21.59
fit2DWithin     9.08   0.03    9.11
** running examples for arch 'x64' ... OK
Examples with CPU or elapsed time > 5s
                user system elapsed
stepWithinNorm 21.90   0.00   21.89
fitWithin      19.26   0.02   19.35
fit2DWithin     8.36   0.01    8.37
* checking PDF version of manual ... OK
* DONE

Status: 2 NOTEs
See
  'C:/Users/biocbuild/bbs-3.6-bioc/meat/stepNorm.Rcheck/00check.log'
for details.

install for i386

* installing *source* package 'stepNorm' ...
** R
** inst
** preparing package for lazy loading
** help
*** installing help indices
  converting help for package 'stepNorm'
    finding HTML links ... done
    calcAIC                                 html  
    calcBIC                                 html  
    fit2DWithin                             html  
    fitWithin                               html  
    maCompPlate2                            html  
    makeStepList                            html  
    marrayFitClass                          html  
    seqWithinNorm                           html  
    stepNorm-internal                       html  
    stepWithinNorm                          html  
    withinNorm                              html  
** building package indices
** testing if installed package can be loaded
In R CMD INSTALL

install for x64

* installing *source* package 'stepNorm' ...
** testing if installed package can be loaded
* MD5 sums
packaged installation of 'stepNorm' as stepNorm_1.50.0.zip
* DONE (stepNorm)
In R CMD INSTALL
In R CMD INSTALL