Package: sampleClassifier

Version: 1.3.1

Command: rm -rf sampleClassifier.buildbin-libdir sampleClassifier.Rcheck && mkdir sampleClassifier.buildbin-libdir sampleClassifier.Rcheck && C:\Users\biocbuild\bbs-3.6-bioc\R\bin\R.exe CMD INSTALL --build --merge-multiarch --library=sampleClassifier.buildbin-libdir sampleClassifier_1.3.1.tar.gz >sampleClassifier.Rcheck\00install.out 2>&1 && cp sampleClassifier.Rcheck\00install.out sampleClassifier-install.out && C:\Users\biocbuild\bbs-3.6-bioc\R\bin\R.exe CMD check --library=sampleClassifier.buildbin-libdir --install="check:sampleClassifier-install.out" --force-multiarch --no-vignettes --timings sampleClassifier_1.3.1.tar.gz

StartedAt: 2018-04-12 02:57:48 -0400 (Thu, 12 Apr 2018)

EndedAt: 2018-04-12 03:06:12 -0400 (Thu, 12 Apr 2018)

EllapsedTime: 503.9 seconds

RetCode: 0

Status:  OK

CheckDir: sampleClassifier.Rcheck

Warnings: 0

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### Running command:
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###   rm -rf sampleClassifier.buildbin-libdir sampleClassifier.Rcheck && mkdir sampleClassifier.buildbin-libdir sampleClassifier.Rcheck && C:\Users\biocbuild\bbs-3.6-bioc\R\bin\R.exe CMD INSTALL --build --merge-multiarch --library=sampleClassifier.buildbin-libdir sampleClassifier_1.3.1.tar.gz >sampleClassifier.Rcheck\00install.out 2>&1 && cp sampleClassifier.Rcheck\00install.out sampleClassifier-install.out  &&  C:\Users\biocbuild\bbs-3.6-bioc\R\bin\R.exe CMD check --library=sampleClassifier.buildbin-libdir --install="check:sampleClassifier-install.out" --force-multiarch --no-vignettes --timings sampleClassifier_1.3.1.tar.gz
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* using log directory 'C:/Users/biocbuild/bbs-3.6-bioc/meat/sampleClassifier.Rcheck'
* using R version 3.4.4 (2018-03-15)
* using platform: x86_64-w64-mingw32 (64-bit)
* using session charset: ISO8859-1
* using option '--no-vignettes'
* checking for file 'sampleClassifier/DESCRIPTION' ... OK
* checking extension type ... Package
* this is package 'sampleClassifier' version '1.3.1'
* checking package namespace information ... OK
* checking package dependencies ... OK
* checking if this is a source package ... OK
* checking if there is a namespace ... OK
* checking for hidden files and directories ... OK
* checking for portable file names ... OK
* checking whether package 'sampleClassifier' can be installed ... OK
* checking installed package size ... OK
* checking package directory ... OK
* checking 'build' directory ... OK
* checking DESCRIPTION meta-information ... OK
* checking top-level files ... OK
* checking for left-over files ... OK
* checking index information ... OK
* checking package subdirectories ... OK
* checking R files for non-ASCII characters ... OK
* checking R files for syntax errors ... OK
* loading checks for arch 'i386'
** checking whether the package can be loaded ... OK
** checking whether the package can be loaded with stated dependencies ... OK
** checking whether the package can be unloaded cleanly ... OK
** checking whether the namespace can be loaded with stated dependencies ... OK
** checking whether the namespace can be unloaded cleanly ... OK
** checking loading without being on the library search path ... OK
* loading checks for arch 'x64'
** checking whether the package can be loaded ... OK
** checking whether the package can be loaded with stated dependencies ... OK
** checking whether the package can be unloaded cleanly ... OK
** checking whether the namespace can be loaded with stated dependencies ... OK
** checking whether the namespace can be unloaded cleanly ... OK
** checking loading without being on the library search path ... OK
* checking dependencies in R code ... OK
* checking S3 generic/method consistency ... OK
* checking replacement functions ... OK
* checking foreign function calls ... OK
* checking R code for possible problems ... OK
* checking Rd files ... OK
* checking Rd metadata ... OK
* checking Rd cross-references ... OK
* checking for missing documentation entries ... OK
* checking for code/documentation mismatches ... OK
* checking Rd \usage sections ... OK
* checking Rd contents ... OK
* checking for unstated dependencies in examples ... OK
* checking installed files from 'inst/doc' ... OK
* checking files in 'vignettes' ... OK
* checking examples ...
** running examples for arch 'i386' ... OK
Examples with CPU or elapsed time > 5s
                            user system elapsed
classifyProfile.rnaseq     86.05   0.26   87.51
classifyProfile            26.17   0.88   27.50
get.heatmap                24.85   0.45   25.30
classifyProfile.svm        24.45   0.33   24.79
classifyProfile.rnaseq.svm 13.15   0.24   13.37
** running examples for arch 'x64' ... OK
Examples with CPU or elapsed time > 5s
                            user system elapsed
classifyProfile.rnaseq     80.97   0.64   81.60
get.heatmap                41.93   0.58   42.61
classifyProfile            38.53   0.47   39.00
classifyProfile.svm        26.13   0.36   26.49
classifyProfile.rnaseq.svm 13.47   0.19   13.66
* checking for unstated dependencies in vignettes ... OK
* checking package vignettes in 'inst/doc' ... OK
* checking running R code from vignettes ... SKIPPED
* checking re-building of vignette outputs ... SKIPPED
* checking PDF version of manual ... OK
* DONE

Status: OK

install for i386

* installing *source* package 'sampleClassifier' ...
** R
** inst
** preparing package for lazy loading
** help
*** installing help indices
  converting help for package 'sampleClassifier'
    finding HTML links ... done
    classifyProfile                         html  
    classifyProfile.rnaseq                  html  
    classifyProfile.rnaseq.svm              html  
    classifyProfile.svm                     html  
    get.heatmap                             html  
    sampleClassifier-internal               html  
    sampleClassifier-package                html  
** building package indices
** installing vignettes
** testing if installed package can be loaded
In R CMD INSTALL

install for x64

* installing *source* package 'sampleClassifier' ...
** testing if installed package can be loaded
* MD5 sums
packaged installation of 'sampleClassifier' as sampleClassifier_1.3.1.zip
* DONE (sampleClassifier)
In R CMD INSTALL
In R CMD INSTALL