Robert Castelo
| Snapshot Date: 2018-04-11 16:45:18 -0400 (Wed, 11 Apr 2018) |
| URL: https://git.bioconductor.org/packages/qpgraph |
| Branch: RELEASE_3_6 |
| Last Commit: 0442713 |
| Last Changed Date: 2017-10-30 12:39:25 -0400 (Mon, 30 Oct 2017) |
| Back to Multiple platform build/check report for BioC 3.6 |
|
This page was generated on 2018-04-12 13:19:33 -0400 (Thu, 12 Apr 2018).
| Package 1097/1472 | Hostname | OS / Arch | INSTALL | BUILD | CHECK | BUILD BIN | ||||||
| qpgraph 2.12.0 Robert Castelo
| malbec1 | Linux (Ubuntu 16.04.1 LTS) / x86_64 | OK | OK | OK | | ||||||
| tokay1 | Windows Server 2012 R2 Standard / x64 | [ OK ] | OK | WARNINGS | OK | | ||||||
| veracruz1 | OS X 10.11.6 El Capitan / x86_64 | OK | OK | OK | OK | |
| Package: qpgraph |
| Version: 2.12.0 |
| Command: rm -rf qpgraph.buildbin-libdir && mkdir qpgraph.buildbin-libdir && C:\cygwin\bin\curl.exe -O https://malbec1.bioconductor.org/BBS/3.6/bioc/src/contrib/qpgraph_2.12.0.tar.gz && C:\Users\biocbuild\bbs-3.6-bioc\R\bin\R.exe CMD INSTALL --build --library=qpgraph.buildbin-libdir --merge-multiarch qpgraph_2.12.0.tar.gz && C:\Users\biocbuild\bbs-3.6-bioc\R\bin\R.exe CMD INSTALL qpgraph_2.12.0.zip && rm qpgraph_2.12.0.tar.gz qpgraph_2.12.0.zip |
| StartedAt: 2018-04-11 18:49:16 -0400 (Wed, 11 Apr 2018) |
| EndedAt: 2018-04-11 18:50:59 -0400 (Wed, 11 Apr 2018) |
| EllapsedTime: 103.3 seconds |
| RetCode: 0 |
| Status: OK |
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### Running command:
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### rm -rf qpgraph.buildbin-libdir && mkdir qpgraph.buildbin-libdir && C:\cygwin\bin\curl.exe -O https://malbec1.bioconductor.org/BBS/3.6/bioc/src/contrib/qpgraph_2.12.0.tar.gz && C:\Users\biocbuild\bbs-3.6-bioc\R\bin\R.exe CMD INSTALL --build --library=qpgraph.buildbin-libdir --merge-multiarch qpgraph_2.12.0.tar.gz && C:\Users\biocbuild\bbs-3.6-bioc\R\bin\R.exe CMD INSTALL qpgraph_2.12.0.zip && rm qpgraph_2.12.0.tar.gz qpgraph_2.12.0.zip
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% Total % Received % Xferd Average Speed Time Time Time Current
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0 0 0 0 0 0 0 0 --:--:-- --:--:-- --:--:-- 0
69 1854k 69 1280k 0 0 23.1M 0 --:--:-- --:--:-- --:--:-- 24.0M
100 1854k 100 1854k 0 0 20.7M 0 --:--:-- --:--:-- --:--:-- 21.3M
install for i386
* installing *source* package 'qpgraph' ...
**********************************************
WARNING: this package has a configure script
It probably needs manual configuration
**********************************************
** libs
C:/Rtools/mingw_32/bin/gcc -I"C:/Users/BIOCBU˜1/BBS-3˜1.6-B/R/include" -DNDEBUG -I"C:/local323/include" -O3 -Wall -std=gnu99 -mtune=generic -c cliquer.c -o cliquer.o
C:/Rtools/mingw_32/bin/gcc -I"C:/Users/BIOCBU˜1/BBS-3˜1.6-B/R/include" -DNDEBUG -I"C:/local323/include" -O3 -Wall -std=gnu99 -mtune=generic -c graph.c -o graph.o
C:/Rtools/mingw_32/bin/gcc -I"C:/Users/BIOCBU˜1/BBS-3˜1.6-B/R/include" -DNDEBUG -I"C:/local323/include" -O3 -Wall -std=gnu99 -mtune=generic -c qpgraph.c -o qpgraph.o
qpgraph.c: In function 'qp_fast_path_weight':
qpgraph.c:5849:20: warning: left-hand operand of comma expression has no effect [-Wunused-value]
int i = edges[k, 0];
^
qpgraph.c:5850:20: warning: left-hand operand of comma expression has no effect [-Wunused-value]
int j = edges[k, 1];
^
qpgraph.c: In function 'ssd_A':
qpgraph.c:8157:17: warning: unused variable 'm' [-Wunused-variable]
int i,j,k,m;
^
qpgraph.c:8157:15: warning: unused variable 'k' [-Wunused-variable]
int i,j,k,m;
^
qpgraph.c: In function 'qp_fast_rnd_graph':
qpgraph.c:8286:5: warning: assignment from incompatible pointer type
G = LOGICAL(GR);
^
In file included from qpgraph.c:27:0:
qpgraph.c: In function 'qp_fast_edge_nrr':
C:/Users/BIOCBU˜1/BBS-3˜1.6-B/R/include/Rmath.h:302:13: warning: 'Rf_df' may be used uninitialized in this function [-Wmaybe-uninitialized]
#define pt Rf_pt
^
C:/Users/BIOCBU˜1/BBS-3˜1.6-B/R/include/Rmath.h:236:13: note: 'Rf_df' was declared here
#define df Rf_df
^
qpgraph.c:5082:16: note: in expansion of macro 'df'
int k, l, df, n_upper_tri;
^
qpgraph.c:5454:11: warning: 'pcorR' may be used uninitialized in this function [-Wmaybe-uninitialized]
SEXP pcorR;
^
qpgraph.c: In function 'qp_fast_ci_test_hmgm':
qpgraph.c:3976:36: warning: 'rss1' may be used uninitialized in this function [-Wmaybe-uninitialized]
*partial_eta_squared = (rss1 - rss2) / rss0;
^
qpgraph.c:3703:11: note: 'rss1' was declared here
double rss1, rss2;
^
C:/Rtools/mingw_32/bin/gcc -I"C:/Users/BIOCBU˜1/BBS-3˜1.6-B/R/include" -DNDEBUG -I"C:/local323/include" -O3 -Wall -std=gnu99 -mtune=generic -c reorder.c -o reorder.o
C:/Rtools/mingw_32/bin/g++ -shared -s -static-libgcc -o qpgraph.dll tmp.def cliquer.o graph.o qpgraph.o reorder.o -LC:/Users/BIOCBU˜1/BBS-3˜1.6-B/R/bin/i386 -lRlapack -LC:/Users/BIOCBU˜1/BBS-3˜1.6-B/R/bin/i386 -lRblas -LC:/local323/lib/i386 -LC:/local323/lib -LC:/Users/BIOCBU˜1/BBS-3˜1.6-B/R/bin/i386 -lR
installing to C:/Users/biocbuild/bbs-3.6-bioc/meat/qpgraph.buildbin-libdir/qpgraph/libs/i386
** R
** data
*** moving datasets to lazyload DB
** inst
** preparing package for lazy loading
Creating a generic function for 'det' from package 'Matrix' in package 'qpgraph'
** help
*** installing help indices
converting help for package 'qpgraph'
finding HTML links ... done
EcoliOxygen html
HMgmm-class html
Rd warning: C:/Users/biocbuild/bbs-3.6-bioc/tmpdir/RtmpkPX5Ko/R.INSTALL17b459464f1d/qpgraph/man/HMgmm-class.Rd:65: missing file link 'dspMatrix-class'
SsdMatrix-class html
Rd warning: C:/Users/biocbuild/bbs-3.6-bioc/tmpdir/RtmpkPX5Ko/R.INSTALL17b459464f1d/qpgraph/man/SsdMatrix-class.Rd:14: missing file link 'dspMatrix-class'
Rd warning: C:/Users/biocbuild/bbs-3.6-bioc/tmpdir/RtmpkPX5Ko/R.INSTALL17b459464f1d/qpgraph/man/SsdMatrix-class.Rd:27: missing file link 'dspMatrix-class'
UGgmm-class html
Rd warning: C:/Users/biocbuild/bbs-3.6-bioc/tmpdir/RtmpkPX5Ko/R.INSTALL17b459464f1d/qpgraph/man/UGgmm-class.Rd:56: missing file link 'dspMatrix-class'
eQTLcross-class html
eQTLnetwork-class html
eQTLnetworkEstimate html
eQTLnetworkEstimationParam-class html
graphParam-class html
qpAllCItests html
qpAnyGraph html
qpAvgNrr html
qpBoundary html
qpCItest html
qpClique html
qpCliqueNumber html
qpCov html
qpEdgeNrr html
qpFunctionalCoherence html
qpG2Sigma html
Rd warning: C:/Users/biocbuild/bbs-3.6-bioc/tmpdir/RtmpkPX5Ko/R.INSTALL17b459464f1d/qpgraph/man/qpG2Sigma.Rd:51: missing file link 'rmvnorm'
qpGenNrr html
qpGetCliques html
qpGraph-class html
qpGraphDensity html
qpHTF html
qpHist html
qpIPF html
qpImportNrr html
qpK2ParCor html
Rd warning: C:/Users/biocbuild/bbs-3.6-bioc/tmpdir/RtmpkPX5Ko/R.INSTALL17b459464f1d/qpgraph/man/qpK2ParCor.Rd:17: missing file link 'cov2cor'
qpNrr html
qpPAC html
qpPCC html
qpPRscoreThreshold html
qpPathWeight html
qpPlotMap html
qpPlotNetwork html
qpPrecisionRecall html
qpRndGraph html
qpRndWishart html
qpTopPairs html
qpUnifRndAssociation html
qpUpdateCliquesRemoving html
qpgraph-package html
** building package indices
** installing vignettes
'eQTLnetworks.Rnw'
'qpTxRegNet.Rnw'
'qpgraphSimulate.Rnw'
** testing if installed package can be loaded
In R CMD INSTALL
install for x64
* installing *source* package 'qpgraph' ...
**********************************************
WARNING: this package has a configure script
It probably needs manual configuration
**********************************************
** libs
C:/Rtools/mingw_64/bin/gcc -I"C:/Users/BIOCBU˜1/BBS-3˜1.6-B/R/include" -DNDEBUG -I"C:/local323/include" -O2 -Wall -std=gnu99 -mtune=generic -c cliquer.c -o cliquer.o
C:/Rtools/mingw_64/bin/gcc -I"C:/Users/BIOCBU˜1/BBS-3˜1.6-B/R/include" -DNDEBUG -I"C:/local323/include" -O2 -Wall -std=gnu99 -mtune=generic -c graph.c -o graph.o
C:/Rtools/mingw_64/bin/gcc -I"C:/Users/BIOCBU˜1/BBS-3˜1.6-B/R/include" -DNDEBUG -I"C:/local323/include" -O2 -Wall -std=gnu99 -mtune=generic -c qpgraph.c -o qpgraph.o
qpgraph.c: In function 'qp_fast_path_weight':
qpgraph.c:5849:20: warning: left-hand operand of comma expression has no effect [-Wunused-value]
int i = edges[k, 0];
^
qpgraph.c:5850:20: warning: left-hand operand of comma expression has no effect [-Wunused-value]
int j = edges[k, 1];
^
qpgraph.c: In function 'ssd_A':
qpgraph.c:8157:17: warning: unused variable 'm' [-Wunused-variable]
int i,j,k,m;
^
qpgraph.c:8157:15: warning: unused variable 'k' [-Wunused-variable]
int i,j,k,m;
^
qpgraph.c: In function 'qp_fast_rnd_graph':
qpgraph.c:8286:5: warning: assignment from incompatible pointer type
G = LOGICAL(GR);
^
In file included from qpgraph.c:27:0:
qpgraph.c: In function 'qp_edge_nrr':
C:/Users/BIOCBU˜1/BBS-3˜1.6-B/R/include/Rmath.h:302:13: warning: 'Rf_df' may be used uninitialized in this function [-Wmaybe-uninitialized]
#define pt Rf_pt
^
C:/Users/BIOCBU˜1/BBS-3˜1.6-B/R/include/Rmath.h:236:13: note: 'Rf_df' was declared here
#define df Rf_df
^
qpgraph.c:5082:16: note: in expansion of macro 'df'
int k, l, df, n_upper_tri;
^
qpgraph.c: In function 'qp_fast_edge_nrr':
qpgraph.c:5454:11: warning: 'pcorR' may be used uninitialized in this function [-Wmaybe-uninitialized]
SEXP pcorR;
^
qpgraph.c: In function 'qp_ci_test_hmgm.isra.9':
qpgraph.c:3976:36: warning: 'rss1' may be used uninitialized in this function [-Wmaybe-uninitialized]
*partial_eta_squared = (rss1 - rss2) / rss0;
^
qpgraph.c:3703:11: note: 'rss1' was declared here
double rss1, rss2;
^
C:/Rtools/mingw_64/bin/gcc -I"C:/Users/BIOCBU˜1/BBS-3˜1.6-B/R/include" -DNDEBUG -I"C:/local323/include" -O2 -Wall -std=gnu99 -mtune=generic -c reorder.c -o reorder.o
C:/Rtools/mingw_64/bin/g++ -shared -s -static-libgcc -o qpgraph.dll tmp.def cliquer.o graph.o qpgraph.o reorder.o -LC:/Users/BIOCBU˜1/BBS-3˜1.6-B/R/bin/x64 -lRlapack -LC:/Users/BIOCBU˜1/BBS-3˜1.6-B/R/bin/x64 -lRblas -LC:/local323/lib/x64 -LC:/local323/lib -LC:/Users/BIOCBU˜1/BBS-3˜1.6-B/R/bin/x64 -lR
installing to C:/Users/biocbuild/bbs-3.6-bioc/meat/qpgraph.buildbin-libdir/qpgraph/libs/x64
** testing if installed package can be loaded
* MD5 sums
packaged installation of 'qpgraph' as qpgraph_2.12.0.zip
* DONE (qpgraph)
In R CMD INSTALL
In R CMD INSTALL
* installing to library 'C:/Users/biocbuild/bbs-3.6-bioc/R/library'
package 'qpgraph' successfully unpacked and MD5 sums checked
In R CMD INSTALL