Altuna Akalin
| Snapshot Date: 2018-04-11 16:45:18 -0400 (Wed, 11 Apr 2018) |
| URL: https://git.bioconductor.org/packages/methylKit |
| Branch: RELEASE_3_6 |
| Last Commit: dd0dd4c |
| Last Changed Date: 2018-01-22 10:25:01 -0400 (Mon, 22 Jan 2018) |
| Back to Multiple platform build/check report for BioC 3.6 |
|
This page was generated on 2018-04-12 13:28:24 -0400 (Thu, 12 Apr 2018).
| Package 839/1472 | Hostname | OS / Arch | INSTALL | BUILD | CHECK | BUILD BIN | ||||||
| methylKit 1.4.1 Altuna Akalin
| malbec1 | Linux (Ubuntu 16.04.1 LTS) / x86_64 | OK | OK | OK | | ||||||
| tokay1 | Windows Server 2012 R2 Standard / x64 | OK | OK | WARNINGS | [ OK ] | | ||||||
| veracruz1 | OS X 10.11.6 El Capitan / x86_64 | OK | OK | OK | OK | |
| Package: methylKit |
| Version: 1.4.1 |
| Command: cd methylKit.buildbin-libdir/methylKit && zip -r ../../methylKit_1.4.1.zip . & cd ../.. |
| StartedAt: 2018-04-12 04:50:56 -0400 (Thu, 12 Apr 2018) |
| EndedAt: 2018-04-12 04:51:37 -0400 (Thu, 12 Apr 2018) |
| EllapsedTime: 41.2 seconds |
| RetCode: 0 |
| Status: OK |
| PackageFile: methylKit_1.4.1.zip |
| PackageFileSize: 4.834 MiB |
############################################################################## ############################################################################## ### ### Running command: ### ### cd methylKit.buildbin-libdir/methylKit && zip -r ../../methylKit_1.4.1.zip . & cd ../.. ### ############################################################################## ############################################################################## adding: CITATION (332 bytes security) (deflated 51%) adding: data/ (372 bytes security) (stored 0%) adding: data/methylKit.RData (332 bytes security) (deflated 1%) adding: DESCRIPTION (332 bytes security) (deflated 50%) adding: doc/ (372 bytes security) (stored 0%) adding: doc/index.html (332 bytes security) (deflated 58%) adding: doc/methylKit.html (332 bytes security) (deflated 60%) adding: doc/methylKit.R (332 bytes security) (deflated 76%) adding: doc/methylKit.Rmd (332 bytes security) (deflated 67%) adding: extdata/ (372 bytes security) (stored 0%) adding: extdata/control1.myCpG.txt (332 bytes security) (deflated 80%) adding: extdata/control2.myCpG.txt (332 bytes security) (deflated 80%) adding: extdata/cpgi.hg18.bed.txt (332 bytes security) (deflated 67%) adding: extdata/ctrl.bismark_paired_end.sorted.bam (332 bytes security) (deflated 1%) adding: extdata/ctrl.bismark_paired_end.sorted.wh.sam (332 bytes security) (deflated 89%) adding: extdata/ctrl1.txt.bgz (332 bytes security) (deflated 1%) adding: extdata/ctrl2.txt.bgz (332 bytes security) (deflated 1%) adding: extdata/generic1.CpG.txt (332 bytes security) (deflated 40%) adding: extdata/refseq.hg18.bed.txt (332 bytes security) (deflated 68%) adding: extdata/test.bismark_single_end.sorted.bam (332 bytes security) (stored 0%) adding: extdata/test.bismark_single_end.sorted.wh.sam (332 bytes security) (deflated 86%) adding: extdata/test.fastq_bismark.sorted.min.sam (332 bytes security) (deflated 79%) adding: extdata/test.fastq_bismark.unsorted.min.sam (332 bytes security) (deflated 80%) adding: extdata/test.fastq_bismark.unsorted_chr.min.sam (332 bytes security) (deflated 80%) adding: extdata/test1.myCpG.txt (332 bytes security) (deflated 78%) adding: extdata/test1.txt.bgz (332 bytes security) (deflated 0%) adding: extdata/test1.txt.bgz.tbi (332 bytes security) (stored 0%) adding: extdata/test1_test2_ctrl1_ctrl2.txt.bgz (332 bytes security) (stored 0%) adding: extdata/test1_test2_ctrl1_ctrl2_diffMeth.txt.bgz (332 bytes security) (deflated 0%) adding: extdata/test2.myCpG.txt (332 bytes security) (deflated 78%) adding: extdata/test2.txt.bgz (332 bytes security) (deflated 1%) adding: help/ (372 bytes security) (stored 0%) adding: help/aliases.rds (332 bytes security) (stored 0%) adding: help/AnIndex (332 bytes security) (deflated 88%) adding: help/methylKit.rdb (332 bytes security) (deflated 1%) adding: help/methylKit.rdx (332 bytes security) (stored 0%) adding: help/paths.rds (332 bytes security) (stored 0%) adding: html/ (372 bytes security) (stored 0%) adding: html/00Index.html (332 bytes security) (deflated 86%) adding: html/adjustMethylC.html (332 bytes security) (deflated 63%) adding: html/assocComp-methods.html (332 bytes security) (deflated 54%) adding: html/bedgraph-methods.html (332 bytes security) (deflated 72%) adding: html/calculateDiffMeth-methods.html (332 bytes security) (deflated 65%) adding: html/calculateDiffMethDSS-methods.html (332 bytes security) (deflated 55%) adding: html/clusterSamples-methods.html (332 bytes security) (deflated 65%) adding: html/dataSim-methods.html (332 bytes security) (deflated 64%) adding: html/diffMethPerChr-methods.html (332 bytes security) (deflated 61%) adding: html/extract-methods.html (332 bytes security) (deflated 62%) adding: html/filterByCoverage-methods.html (332 bytes security) (deflated 68%) adding: html/genomation-deprecated.html (332 bytes security) (deflated 49%) adding: html/getAssembly-methods.html (332 bytes security) (deflated 65%) adding: html/getContext-methods.html (332 bytes security) (deflated 61%) adding: html/getCorrelation-methods.html (332 bytes security) (deflated 58%) adding: html/getCoverageStats-methods.html (332 bytes security) (deflated 61%) adding: html/getData-methods.html (332 bytes security) (deflated 60%) adding: html/getDBPath-methods.html (332 bytes security) (deflated 61%) adding: html/getMethylationStats-methods.html (332 bytes security) (deflated 61%) adding: html/getMethylDiff-methods.html (332 bytes security) (deflated 64%) adding: html/getSampleID-methods.html (332 bytes security) (deflated 72%) adding: html/getTreatment-methods.html (332 bytes security) (deflated 69%) adding: html/joinSegmentNeighbours.html (332 bytes security) (deflated 54%) adding: html/makeMethylDB-methods.html (332 bytes security) (deflated 63%) adding: html/methRead-methods.html (332 bytes security) (deflated 66%) adding: html/methSeg.html (332 bytes security) (deflated 60%) adding: html/methSeg2bed.html (332 bytes security) (deflated 54%) adding: html/methylBase-class.html (332 bytes security) (deflated 60%) adding: html/methylBase.obj.html (332 bytes security) (deflated 46%) adding: html/methylBaseDB-class.html (332 bytes security) (deflated 62%) adding: html/methylDiff-class.html (332 bytes security) (deflated 59%) adding: html/methylDiff.obj.html (332 bytes security) (deflated 46%) adding: html/methylDiffDB-class.html (332 bytes security) (deflated 60%) adding: html/methylRaw-class.html (332 bytes security) (deflated 57%) adding: html/methylRawDB-class.html (332 bytes security) (deflated 62%) adding: html/methylRawList-class.html (332 bytes security) (deflated 51%) adding: html/methylRawList.obj.html (332 bytes security) (deflated 46%) adding: html/methylRawListDB-class.html (332 bytes security) (deflated 57%) adding: html/normalizeCoverage-methods.html (332 bytes security) (deflated 60%) adding: html/PCASamples-methods.html (332 bytes security) (deflated 64%) adding: html/percMethylation-methods.html (332 bytes security) (deflated 59%) adding: html/pool-methods.html (332 bytes security) (deflated 59%) adding: html/processBismarkAln-methods.html (332 bytes security) (deflated 65%) adding: html/R.css (332 bytes security) (deflated 75%) adding: html/reconstruct-methods.html (332 bytes security) (deflated 63%) adding: html/regionCounts.html (332 bytes security) (deflated 71%) adding: html/removeComp-methods.html (332 bytes security) (deflated 62%) adding: html/reorganize-methods.html (332 bytes security) (deflated 66%) adding: html/select-methods.html (332 bytes security) (deflated 64%) adding: html/selectByOverlap-methods.html (332 bytes security) (deflated 69%) adding: html/show-methods.html (332 bytes security) (deflated 61%) adding: html/tileMethylCounts-methods.html (332 bytes security) (deflated 68%) adding: html/unite-methods.html (332 bytes security) (deflated 61%) adding: html/updateMethObject.html (332 bytes security) (deflated 56%) adding: INDEX (332 bytes security) (deflated 71%) adding: libs/ (372 bytes security) (stored 0%) adding: libs/i386/ (372 bytes security) (stored 0%) adding: libs/i386/methylKit.dll (332 bytes security) (deflated 61%) adding: libs/x64/ (372 bytes security) (stored 0%) adding: libs/x64/methylKit.dll (332 bytes security) (deflated 66%) adding: MD5 (332 bytes security) (deflated 52%) adding: Meta/ (372 bytes security) (stored 0%) adding: Meta/data.rds (332 bytes security) (stored 0%) adding: Meta/features.rds (332 bytes security) (stored 0%) adding: Meta/hsearch.rds (332 bytes security) (stored 0%) adding: Meta/links.rds (332 bytes security) (stored 0%) adding: Meta/nsInfo.rds (332 bytes security) (stored 0%) adding: Meta/package.rds (332 bytes security) (stored 0%) adding: Meta/Rd.rds (332 bytes security) (stored 0%) adding: Meta/vignette.rds (332 bytes security) (stored 0%) adding: methylKit_logo.png (332 bytes security) (deflated 3%) adding: NAMESPACE (332 bytes security) (deflated 74%) adding: NEWS (332 bytes security) (deflated 66%) adding: R/ (372 bytes security) (stored 0%) adding: R/methylKit (332 bytes security) (deflated 41%) adding: R/methylKit.rdb (332 bytes security) (deflated 33%) adding: R/methylKit.rdx (332 bytes security) (deflated 0%) adding: scripts/ (372 bytes security) (stored 0%) adding: scripts/create.data.R (332 bytes security) (deflated 69%)