Back to Multiple platform build/check report for BioC 3.6 |
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This page was generated on 2018-04-12 13:44:22 -0400 (Thu, 12 Apr 2018).
Package 533/1472 | Hostname | OS / Arch | INSTALL | BUILD | CHECK | BUILD BIN | ||||||
geneClassifiers 1.2.0 R Kuiper
| malbec1 | Linux (Ubuntu 16.04.1 LTS) / x86_64 | NotNeeded | OK | OK | |||||||
tokay1 | Windows Server 2012 R2 Standard / x64 | NotNeeded | OK | OK | OK | |||||||
veracruz1 | OS X 10.11.6 El Capitan / x86_64 | NotNeeded | OK | [ OK ] | OK |
Package: geneClassifiers |
Version: 1.2.0 |
Command: /Library/Frameworks/R.framework/Versions/Current/Resources/bin/R CMD check --no-vignettes --timings geneClassifiers_1.2.0.tar.gz |
StartedAt: 2018-04-12 04:08:12 -0400 (Thu, 12 Apr 2018) |
EndedAt: 2018-04-12 04:08:59 -0400 (Thu, 12 Apr 2018) |
EllapsedTime: 47.1 seconds |
RetCode: 0 |
Status: OK |
CheckDir: geneClassifiers.Rcheck |
Warnings: 0 |
############################################################################## ############################################################################## ### ### Running command: ### ### /Library/Frameworks/R.framework/Versions/Current/Resources/bin/R CMD check --no-vignettes --timings geneClassifiers_1.2.0.tar.gz ### ############################################################################## ############################################################################## * using log directory ‘/Users/biocbuild/bbs-3.6-bioc/meat/geneClassifiers.Rcheck’ * using R version 3.4.4 (2018-03-15) * using platform: x86_64-apple-darwin15.6.0 (64-bit) * using session charset: UTF-8 * using option ‘--no-vignettes’ * checking for file ‘geneClassifiers/DESCRIPTION’ ... OK * checking extension type ... Package * this is package ‘geneClassifiers’ version ‘1.2.0’ * checking package namespace information ... OK * checking package dependencies ... OK * checking if this is a source package ... OK * checking if there is a namespace ... OK * checking for hidden files and directories ... OK * checking for portable file names ... OK * checking for sufficient/correct file permissions ... OK * checking whether package ‘geneClassifiers’ can be installed ... OK * checking installed package size ... OK * checking package directory ... OK * checking ‘build’ directory ... OK * checking DESCRIPTION meta-information ... OK * checking top-level files ... OK * checking for left-over files ... OK * checking index information ... OK * checking package subdirectories ... OK * checking R files for non-ASCII characters ... OK * checking R files for syntax errors ... OK * checking whether the package can be loaded ... OK * checking whether the package can be loaded with stated dependencies ... OK * checking whether the package can be unloaded cleanly ... OK * checking whether the namespace can be loaded with stated dependencies ... OK * checking whether the namespace can be unloaded cleanly ... OK * checking loading without being on the library search path ... OK * checking dependencies in R code ... OK * checking S3 generic/method consistency ... OK * checking replacement functions ... OK * checking foreign function calls ... OK * checking R code for possible problems ... OK * checking Rd files ... OK * checking Rd metadata ... OK * checking Rd cross-references ... OK * checking for missing documentation entries ... OK * checking for code/documentation mismatches ... OK * checking Rd \usage sections ... OK * checking Rd contents ... OK * checking for unstated dependencies in examples ... OK * checking contents of ‘data’ directory ... OK * checking data for non-ASCII characters ... OK * checking data for ASCII and uncompressed saves ... OK * checking R/sysdata.rda ... OK * checking sizes of PDF files under ‘inst/doc’ ... OK * checking installed files from ‘inst/doc’ ... OK * checking files in ‘vignettes’ ... OK * checking examples ... OK * checking for unstated dependencies in ‘tests’ ... OK * checking tests ... Running ‘testthat.R’ OK * checking for unstated dependencies in vignettes ... OK * checking package vignettes in ‘inst/doc’ ... OK * checking running R code from vignettes ... SKIPPED * checking re-building of vignette outputs ... SKIPPED * checking PDF version of manual ... OK * DONE Status: OK
geneClassifiers.Rcheck/00install.out
* installing *source* package ‘geneClassifiers’ ... ** R ** data *** moving datasets to lazyload DB ** inst ** preparing package for lazy loading ** help *** installing help indices ** building package indices ** installing vignettes ** testing if installed package can be loaded * DONE (geneClassifiers)
geneClassifiers.Rcheck/tests/testthat.Rout
R version 3.4.4 (2018-03-15) -- "Someone to Lean On" Copyright (C) 2018 The R Foundation for Statistical Computing Platform: x86_64-apple-darwin15.6.0 (64-bit) R is free software and comes with ABSOLUTELY NO WARRANTY. You are welcome to redistribute it under certain conditions. Type 'license()' or 'licence()' for distribution details. R is a collaborative project with many contributors. Type 'contributors()' for more information and 'citation()' on how to cite R or R packages in publications. Type 'demo()' for some demos, 'help()' for on-line help, or 'help.start()' for an HTML browser interface to help. Type 'q()' to quit R. > library(testthat) > library(geneClassifiers) > > test_check("geneClassifiers") ══ testthat results ═══════════════════════════════════════════════════════════ OK: 136 SKIPPED: 0 FAILED: 0 > > proc.time() user system elapsed 1.984 0.081 2.083
geneClassifiers.Rcheck/geneClassifiers-Ex.timings
name | user | system | elapsed | |
bracket-methods | 0.173 | 0.009 | 0.187 | |
dim-methods | 0.021 | 0.001 | 0.022 | |
getBatchCorrection-methods | 0.390 | 0.008 | 0.407 | |
getCitations-methods | 0.002 | 0.000 | 0.002 | |
getClassifications-methods | 0.106 | 0.001 | 0.108 | |
getClassifier-methods | 0.003 | 0.000 | 0.003 | |
getDecisionBoundaries-methods | 0.002 | 0.000 | 0.003 | |
getDescription-methods | 0.003 | 0.000 | 0.003 | |
getEventChain-methods | 0.002 | 0.000 | 0.002 | |
getIntercept-methods | 0.002 | 0.000 | 0.002 | |
getMeans-methods | 0.004 | 0.001 | 0.005 | |
getName-methods | 0.002 | 0.001 | 0.002 | |
getNormalizationMethod-methods | 0.051 | 0.003 | 0.053 | |
getProbeNames-methods | 0.003 | 0.000 | 0.003 | |
getScores-methods | 0.043 | 0.001 | 0.048 | |
getSds-methods | 0.003 | 0.000 | 0.003 | |
getTargetValue-methods | 0.014 | 0.001 | 0.014 | |
getTrainingData-methods | 0.064 | 0.001 | 0.063 | |
getWeightingType-methods | 0.034 | 0.000 | 0.034 | |
getWeights-methods | 0.003 | 0.001 | 0.003 | |
runClassifier-methods | 0.082 | 0.001 | 0.083 | |
setNormalizationMethod-methods | 0.037 | 0.001 | 0.038 | |
showClassifierList-methods | 0.083 | 0.001 | 0.084 | |