Package: funtooNorm

Version: 1.2.0

Command: rm -rf funtooNorm.buildbin-libdir funtooNorm.Rcheck && mkdir funtooNorm.buildbin-libdir funtooNorm.Rcheck && C:\Users\biocbuild\bbs-3.6-bioc\R\bin\R.exe CMD INSTALL --build --merge-multiarch --library=funtooNorm.buildbin-libdir funtooNorm_1.2.0.tar.gz >funtooNorm.Rcheck\00install.out 2>&1 && cp funtooNorm.Rcheck\00install.out funtooNorm-install.out && C:\Users\biocbuild\bbs-3.6-bioc\R\bin\R.exe CMD check --library=funtooNorm.buildbin-libdir --install="check:funtooNorm-install.out" --force-multiarch --no-vignettes --timings funtooNorm_1.2.0.tar.gz

StartedAt: 2018-04-12 00:06:04 -0400 (Thu, 12 Apr 2018)

EndedAt: 2018-04-12 00:14:56 -0400 (Thu, 12 Apr 2018)

EllapsedTime: 532.0 seconds

RetCode: 0

Status:  OK

CheckDir: funtooNorm.Rcheck

Warnings: 0

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### Running command:
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###   rm -rf funtooNorm.buildbin-libdir funtooNorm.Rcheck && mkdir funtooNorm.buildbin-libdir funtooNorm.Rcheck && C:\Users\biocbuild\bbs-3.6-bioc\R\bin\R.exe CMD INSTALL --build --merge-multiarch --library=funtooNorm.buildbin-libdir funtooNorm_1.2.0.tar.gz >funtooNorm.Rcheck\00install.out 2>&1 && cp funtooNorm.Rcheck\00install.out funtooNorm-install.out  &&  C:\Users\biocbuild\bbs-3.6-bioc\R\bin\R.exe CMD check --library=funtooNorm.buildbin-libdir --install="check:funtooNorm-install.out" --force-multiarch --no-vignettes --timings funtooNorm_1.2.0.tar.gz
###
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* using log directory 'C:/Users/biocbuild/bbs-3.6-bioc/meat/funtooNorm.Rcheck'
* using R version 3.4.4 (2018-03-15)
* using platform: x86_64-w64-mingw32 (64-bit)
* using session charset: ISO8859-1
* using option '--no-vignettes'
* checking for file 'funtooNorm/DESCRIPTION' ... OK
* checking extension type ... Package
* this is package 'funtooNorm' version '1.2.0'
* checking package namespace information ... OK
* checking package dependencies ... OK
* checking if this is a source package ... OK
* checking if there is a namespace ... OK
* checking for hidden files and directories ... OK
* checking for portable file names ... OK
* checking whether package 'funtooNorm' can be installed ... OK
* checking installed package size ... OK
* checking package directory ... OK
* checking 'build' directory ... OK
* checking DESCRIPTION meta-information ... OK
* checking top-level files ... OK
* checking for left-over files ... OK
* checking index information ... OK
* checking package subdirectories ... OK
* checking R files for non-ASCII characters ... OK
* checking R files for syntax errors ... OK
* loading checks for arch 'i386'
** checking whether the package can be loaded ... OK
** checking whether the package can be loaded with stated dependencies ... OK
** checking whether the package can be unloaded cleanly ... OK
** checking whether the namespace can be loaded with stated dependencies ... OK
** checking whether the namespace can be unloaded cleanly ... OK
** checking loading without being on the library search path ... OK
* loading checks for arch 'x64'
** checking whether the package can be loaded ... OK
** checking whether the package can be loaded with stated dependencies ... OK
** checking whether the package can be unloaded cleanly ... OK
** checking whether the namespace can be loaded with stated dependencies ... OK
** checking whether the namespace can be unloaded cleanly ... OK
** checking loading without being on the library search path ... OK
* checking dependencies in R code ... OK
* checking S3 generic/method consistency ... OK
* checking replacement functions ... OK
* checking foreign function calls ... OK
* checking R code for possible problems ... OK
* checking Rd files ... OK
* checking Rd metadata ... OK
* checking Rd cross-references ... OK
* checking for missing documentation entries ... OK
* checking for code/documentation mismatches ... OK
* checking Rd \usage sections ... OK
* checking Rd contents ... OK
* checking for unstated dependencies in examples ... OK
* checking R/sysdata.rda ... OK
* checking installed files from 'inst/doc' ... OK
* checking files in 'vignettes' ... OK
* checking examples ...
** running examples for arch 'i386' ... OK
Examples with CPU or elapsed time > 5s
                       user system elapsed
plotValidationGraph   19.92   0.38   20.36
getNormBeta           15.01   0.66   15.67
funtooNorm            14.69   0.86   15.55
getNormM              14.31   0.72   15.03
getSnpM               14.00   0.78   14.78
fromRGChannelSet      11.72   0.80   15.30
getRawBeta             5.03   0.42    5.45
show-SampleSet-method  4.58   0.45    5.03
** running examples for arch 'x64' ... OK
Examples with CPU or elapsed time > 5s
                       user system elapsed
plotValidationGraph   23.79   0.94   24.74
funtooNorm            17.22   1.11   18.32
getNormM              16.95   0.96   17.90
getSnpM               16.47   1.17   17.66
getNormBeta           15.83   0.93   16.77
fromRGChannelSet      13.32   0.89   14.22
getRawBeta             6.95   0.59    7.55
getGRanges             6.03   0.71    6.75
show-SampleSet-method  5.47   0.66    6.12
* checking for unstated dependencies in vignettes ... OK
* checking package vignettes in 'inst/doc' ... OK
* checking running R code from vignettes ... SKIPPED
* checking re-building of vignette outputs ... SKIPPED
* checking PDF version of manual ... OK
* DONE

Status: OK

install for i386

* installing *source* package 'funtooNorm' ...
** R
** inst
** preparing package for lazy loading
** help
*** installing help indices
  converting help for package 'funtooNorm'
    finding HTML links ... done
    SampleSet-class                         html  
    agreement                               html  
    fromGenStudFiles                        html  
    fromRGChannelSet                        html  
    funtooNorm-package                      html  
    funtooNorm                              html  
    getGRanges                              html  
    getNormBeta                             html  
    getNormM                                html  
    getRawBeta                              html  
    getSnpM                                 html  
    plotValidationGraph                     html  
    show-SampleSet-method                   html  
** building package indices
** installing vignettes
** testing if installed package can be loaded
In R CMD INSTALL

install for x64

* installing *source* package 'funtooNorm' ...
** testing if installed package can be loaded
* MD5 sums
packaged installation of 'funtooNorm' as funtooNorm_1.2.0.zip
* DONE (funtooNorm)
In R CMD INSTALL
In R CMD INSTALL