Johannes Rainer
| Snapshot Date: 2018-04-11 16:45:18 -0400 (Wed, 11 Apr 2018) |
| URL: https://git.bioconductor.org/packages/ensembldb |
| Branch: RELEASE_3_6 |
| Last Commit: d71610e |
| Last Changed Date: 2018-02-14 02:24:35 -0400 (Wed, 14 Feb 2018) |
| Back to Multiple platform build/check report for BioC 3.6 |
|
This page was generated on 2018-04-12 13:25:57 -0400 (Thu, 12 Apr 2018).
| Package 424/1472 | Hostname | OS / Arch | INSTALL | BUILD | CHECK | BUILD BIN | ||||||
| ensembldb 2.2.2 Johannes Rainer
| malbec1 | Linux (Ubuntu 16.04.1 LTS) / x86_64 | OK | OK | OK | | ||||||
| tokay1 | Windows Server 2012 R2 Standard / x64 | [ OK ] | OK | WARNINGS | OK | | ||||||
| veracruz1 | OS X 10.11.6 El Capitan / x86_64 | OK | OK | OK | OK | |
| Package: ensembldb |
| Version: 2.2.2 |
| Command: rm -rf ensembldb.buildbin-libdir && mkdir ensembldb.buildbin-libdir && C:\cygwin\bin\curl.exe -O https://malbec1.bioconductor.org/BBS/3.6/bioc/src/contrib/ensembldb_2.2.2.tar.gz && C:\Users\biocbuild\bbs-3.6-bioc\R\bin\R.exe CMD INSTALL --build --library=ensembldb.buildbin-libdir --merge-multiarch ensembldb_2.2.2.tar.gz && C:\Users\biocbuild\bbs-3.6-bioc\R\bin\R.exe CMD INSTALL ensembldb_2.2.2.zip && rm ensembldb_2.2.2.tar.gz ensembldb_2.2.2.zip |
| StartedAt: 2018-04-11 18:49:15 -0400 (Wed, 11 Apr 2018) |
| EndedAt: 2018-04-11 18:50:13 -0400 (Wed, 11 Apr 2018) |
| EllapsedTime: 57.9 seconds |
| RetCode: 0 |
| Status: OK |
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### Running command:
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### rm -rf ensembldb.buildbin-libdir && mkdir ensembldb.buildbin-libdir && C:\cygwin\bin\curl.exe -O https://malbec1.bioconductor.org/BBS/3.6/bioc/src/contrib/ensembldb_2.2.2.tar.gz && C:\Users\biocbuild\bbs-3.6-bioc\R\bin\R.exe CMD INSTALL --build --library=ensembldb.buildbin-libdir --merge-multiarch ensembldb_2.2.2.tar.gz && C:\Users\biocbuild\bbs-3.6-bioc\R\bin\R.exe CMD INSTALL ensembldb_2.2.2.zip && rm ensembldb_2.2.2.tar.gz ensembldb_2.2.2.zip
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install for i386
* installing *source* package 'ensembldb' ...
** R
** inst
** preparing package for lazy loading
** help
*** installing help indices
converting help for package 'ensembldb'
finding HTML links ... done
Deprecated html
Rd warning: C:/Users/biocbuild/bbs-3.6-bioc/tmpdir/Rtmp4wyGnY/R.INSTALL103c27b6930/ensembldb/man/Deprecated.Rd:55: missing file link 'GeneIdFilter'
Rd warning: C:/Users/biocbuild/bbs-3.6-bioc/tmpdir/Rtmp4wyGnY/R.INSTALL103c27b6930/ensembldb/man/Deprecated.Rd:58: missing file link 'GeneBiotypeFilter'
Rd warning: C:/Users/biocbuild/bbs-3.6-bioc/tmpdir/Rtmp4wyGnY/R.INSTALL103c27b6930/ensembldb/man/Deprecated.Rd:61: missing file link 'EntrezFilter'
Rd warning: C:/Users/biocbuild/bbs-3.6-bioc/tmpdir/Rtmp4wyGnY/R.INSTALL103c27b6930/ensembldb/man/Deprecated.Rd:64: missing file link 'TxIdFilter'
Rd warning: C:/Users/biocbuild/bbs-3.6-bioc/tmpdir/Rtmp4wyGnY/R.INSTALL103c27b6930/ensembldb/man/Deprecated.Rd:67: missing file link 'TxBiotypeFilter'
Rd warning: C:/Users/biocbuild/bbs-3.6-bioc/tmpdir/Rtmp4wyGnY/R.INSTALL103c27b6930/ensembldb/man/Deprecated.Rd:70: missing file link 'ExonIdFilter'
Rd warning: C:/Users/biocbuild/bbs-3.6-bioc/tmpdir/Rtmp4wyGnY/R.INSTALL103c27b6930/ensembldb/man/Deprecated.Rd:73: missing file link 'ExonRankFilter'
Rd warning: C:/Users/biocbuild/bbs-3.6-bioc/tmpdir/Rtmp4wyGnY/R.INSTALL103c27b6930/ensembldb/man/Deprecated.Rd:76: missing file link 'SeqNameFilter'
Rd warning: C:/Users/biocbuild/bbs-3.6-bioc/tmpdir/Rtmp4wyGnY/R.INSTALL103c27b6930/ensembldb/man/Deprecated.Rd:79: missing file link 'SeqStrandFilter'
Rd warning: C:/Users/biocbuild/bbs-3.6-bioc/tmpdir/Rtmp4wyGnY/R.INSTALL103c27b6930/ensembldb/man/Deprecated.Rd:83: missing file link 'GeneStartFilter'
Rd warning: C:/Users/biocbuild/bbs-3.6-bioc/tmpdir/Rtmp4wyGnY/R.INSTALL103c27b6930/ensembldb/man/Deprecated.Rd:84: missing file link 'TxStartFilter'
Rd warning: C:/Users/biocbuild/bbs-3.6-bioc/tmpdir/Rtmp4wyGnY/R.INSTALL103c27b6930/ensembldb/man/Deprecated.Rd:85: missing file link 'ExonStartFilter'
Rd warning: C:/Users/biocbuild/bbs-3.6-bioc/tmpdir/Rtmp4wyGnY/R.INSTALL103c27b6930/ensembldb/man/Deprecated.Rd:89: missing file link 'GeneEndFilter'
Rd warning: C:/Users/biocbuild/bbs-3.6-bioc/tmpdir/Rtmp4wyGnY/R.INSTALL103c27b6930/ensembldb/man/Deprecated.Rd:90: missing file link 'TxEndFilter'
Rd warning: C:/Users/biocbuild/bbs-3.6-bioc/tmpdir/Rtmp4wyGnY/R.INSTALL103c27b6930/ensembldb/man/Deprecated.Rd:91: missing file link 'ExonEndFilter'
EnsDb-AnnotationDbi html
Rd warning: C:/Users/biocbuild/bbs-3.6-bioc/tmpdir/Rtmp4wyGnY/R.INSTALL103c27b6930/ensembldb/man/EnsDb-AnnotationDbi.Rd:75: missing file link 'mapIds'
EnsDb-class html
EnsDb-exonsBy html
finding level-2 HTML links ... done
Rd warning: C:/Users/biocbuild/bbs-3.6-bioc/tmpdir/Rtmp4wyGnY/R.INSTALL103c27b6930/ensembldb/man/EnsDb-exonsBy.Rd:156: missing file link 'exonsByOverlaps'
Rd warning: C:/Users/biocbuild/bbs-3.6-bioc/tmpdir/Rtmp4wyGnY/R.INSTALL103c27b6930/ensembldb/man/EnsDb-exonsBy.Rd:162: missing file link 'exonsByOverlaps'
Rd warning: C:/Users/biocbuild/bbs-3.6-bioc/tmpdir/Rtmp4wyGnY/R.INSTALL103c27b6930/ensembldb/man/EnsDb-exonsBy.Rd:194: missing file link 'exonsByOverlaps'
Rd warning: C:/Users/biocbuild/bbs-3.6-bioc/tmpdir/Rtmp4wyGnY/R.INSTALL103c27b6930/ensembldb/man/EnsDb-exonsBy.Rd:243: missing file link 'exonsByOverlaps'
EnsDb-lengths html
EnsDb-seqlevels html
EnsDb-sequences html
EnsDb-utils html
EnsDb html
Filter-classes html
Rd warning: C:/Users/biocbuild/bbs-3.6-bioc/tmpdir/Rtmp4wyGnY/R.INSTALL103c27b6930/ensembldb/man/Filter-classes.Rd:39: missing file link 'GRangesFilter'
Rd warning: C:/Users/biocbuild/bbs-3.6-bioc/tmpdir/Rtmp4wyGnY/R.INSTALL103c27b6930/ensembldb/man/Filter-classes.Rd:40: missing file link 'GRanges'
Rd warning: C:/Users/biocbuild/bbs-3.6-bioc/tmpdir/Rtmp4wyGnY/R.INSTALL103c27b6930/ensembldb/man/Filter-classes.Rd:44: missing file link 'GeneIdFilter'
Rd warning: C:/Users/biocbuild/bbs-3.6-bioc/tmpdir/Rtmp4wyGnY/R.INSTALL103c27b6930/ensembldb/man/Filter-classes.Rd:47: missing file link 'GeneStartFilter'
Rd warning: C:/Users/biocbuild/bbs-3.6-bioc/tmpdir/Rtmp4wyGnY/R.INSTALL103c27b6930/ensembldb/man/Filter-classes.Rd:166: missing file link 'GRanges'
Rd warning: C:/Users/biocbuild/bbs-3.6-bioc/tmpdir/Rtmp4wyGnY/R.INSTALL103c27b6930/ensembldb/man/Filter-classes.Rd:171: missing file link 'GRangesFilter'
Rd warning: C:/Users/biocbuild/bbs-3.6-bioc/tmpdir/Rtmp4wyGnY/R.INSTALL103c27b6930/ensembldb/man/Filter-classes.Rd:252: missing file link 'GRangesFilter'
Rd warning: C:/Users/biocbuild/bbs-3.6-bioc/tmpdir/Rtmp4wyGnY/R.INSTALL103c27b6930/ensembldb/man/Filter-classes.Rd:363: missing file link 'GeneIdFilter'
ProteinFunctionality html
convertFilter html
global-filters html
hasProteinData-EnsDb-method html
listEnsDbs html
makeEnsemblDbPackage html
runEnsDbApp html
useMySQL-EnsDb-method html
** building package indices
** installing vignettes
** testing if installed package can be loaded
In R CMD INSTALL
install for x64
* installing *source* package 'ensembldb' ...
** testing if installed package can be loaded
* MD5 sums
packaged installation of 'ensembldb' as ensembldb_2.2.2.zip
* DONE (ensembldb)
In R CMD INSTALL
In R CMD INSTALL
* installing to library 'C:/Users/biocbuild/bbs-3.6-bioc/R/library'
package 'ensembldb' successfully unpacked and MD5 sums checked
In R CMD INSTALL