Nicolas Delhomme
| Snapshot Date: 2018-04-11 16:45:18 -0400 (Wed, 11 Apr 2018) |
| URL: https://git.bioconductor.org/packages/easyRNASeq |
| Branch: RELEASE_3_6 |
| Last Commit: 8212b25 |
| Last Changed Date: 2017-10-30 12:39:37 -0400 (Mon, 30 Oct 2017) |
| Back to Multiple platform build/check report for BioC 3.6 |
|
This page was generated on 2018-04-12 13:21:29 -0400 (Thu, 12 Apr 2018).
| Package 399/1472 | Hostname | OS / Arch | INSTALL | BUILD | CHECK | BUILD BIN | ||||||
| easyRNASeq 2.14.0 Nicolas Delhomme
| malbec1 | Linux (Ubuntu 16.04.1 LTS) / x86_64 | OK | OK | OK | | ||||||
| tokay1 | Windows Server 2012 R2 Standard / x64 | [ OK ] | OK | WARNINGS | OK | | ||||||
| veracruz1 | OS X 10.11.6 El Capitan / x86_64 | OK | OK | OK | OK | |
| Package: easyRNASeq |
| Version: 2.14.0 |
| Command: rm -rf easyRNASeq.buildbin-libdir && mkdir easyRNASeq.buildbin-libdir && C:\cygwin\bin\curl.exe -O https://malbec1.bioconductor.org/BBS/3.6/bioc/src/contrib/easyRNASeq_2.14.0.tar.gz && C:\Users\biocbuild\bbs-3.6-bioc\R\bin\R.exe CMD INSTALL --build --library=easyRNASeq.buildbin-libdir --merge-multiarch easyRNASeq_2.14.0.tar.gz && C:\Users\biocbuild\bbs-3.6-bioc\R\bin\R.exe CMD INSTALL easyRNASeq_2.14.0.zip && rm easyRNASeq_2.14.0.tar.gz easyRNASeq_2.14.0.zip |
| StartedAt: 2018-04-11 18:47:39 -0400 (Wed, 11 Apr 2018) |
| EndedAt: 2018-04-11 18:49:12 -0400 (Wed, 11 Apr 2018) |
| EllapsedTime: 92.9 seconds |
| RetCode: 0 |
| Status: OK |
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### Running command:
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### rm -rf easyRNASeq.buildbin-libdir && mkdir easyRNASeq.buildbin-libdir && C:\cygwin\bin\curl.exe -O https://malbec1.bioconductor.org/BBS/3.6/bioc/src/contrib/easyRNASeq_2.14.0.tar.gz && C:\Users\biocbuild\bbs-3.6-bioc\R\bin\R.exe CMD INSTALL --build --library=easyRNASeq.buildbin-libdir --merge-multiarch easyRNASeq_2.14.0.tar.gz && C:\Users\biocbuild\bbs-3.6-bioc\R\bin\R.exe CMD INSTALL easyRNASeq_2.14.0.zip && rm easyRNASeq_2.14.0.tar.gz easyRNASeq_2.14.0.zip
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install for i386
* installing *source* package 'easyRNASeq' ...
** R
** data
** inst
** preparing package for lazy loading
Creating a generic function for 'basename' from package 'base' in package 'easyRNASeq'
Creating a generic function for 'file.exists' from package 'base' in package 'easyRNASeq'
** help
*** installing help indices
converting help for package 'easyRNASeq'
finding HTML links ... done
DESeq-methods html
finding level-2 HTML links ... done
GenomicRanges-methods html
Rd warning: C:/Users/biocbuild/bbs-3.6-bioc/tmpdir/RtmpqwcfGE/R.INSTALL104436be6bde/easyRNASeq/man/GenomicRanges-methods.Rd:20: missing file link 'colnames'
Rd warning: C:/Users/biocbuild/bbs-3.6-bioc/tmpdir/RtmpqwcfGE/R.INSTALL104436be6bde/easyRNASeq/man/GenomicRanges-methods.Rd:22: missing file link 'colnames'
Rd warning: C:/Users/biocbuild/bbs-3.6-bioc/tmpdir/RtmpqwcfGE/R.INSTALL104436be6bde/easyRNASeq/man/GenomicRanges-methods.Rd:99: missing file link 'colnames'
IRanges-methods html
Rsamtools-methods html
ShortRead-methods html
basename-methods html
easyRNASeq-AnnotParam-accessors html
easyRNASeq-AnnotParam-class html
easyRNASeq-AnnotParam html
easyRNASeq-BamFileList html
easyRNASeq-BamParam-accessors html
easyRNASeq-BamParam-class html
easyRNASeq-BamParam html
easyRNASeq-RnaSeqParam-accessors html
easyRNASeq-RnaSeqParam-class html
Rd warning: C:/Users/biocbuild/bbs-3.6-bioc/tmpdir/RtmpqwcfGE/R.INSTALL104436be6bde/easyRNASeq/man/easyRNASeq-RnaSeqParam-class.Rd:14: missing file link 'summarizeOverlaps'
Rd warning: C:/Users/biocbuild/bbs-3.6-bioc/tmpdir/RtmpqwcfGE/R.INSTALL104436be6bde/easyRNASeq/man/easyRNASeq-RnaSeqParam-class.Rd:39: missing file link 'summarizeOverlaps'
easyRNASeq-RnaSeqParam html
easyRNASeq-accessors html
easyRNASeq-annotation-internal-methods
html
easyRNASeq-annotation-methods html
Rd warning: C:/Users/biocbuild/bbs-3.6-bioc/tmpdir/RtmpqwcfGE/R.INSTALL104436be6bde/easyRNASeq/man/easyRNASeq-annotation-methods.Rd:38: missing file link 'readGff3'
easyRNASeq-class html
easyRNASeq-correction-methods html
easyRNASeq-coverage-methods html
easyRNASeq-datasets html
easyRNASeq-defunct-annotation-methods html
easyRNASeq-defunct html
easyRNASeq-deprecated html
easyRNASeq-easyRNASeq html
easyRNASeq-global-variables html
easyRNASeq-internal-AnnotParam-methods
html
easyRNASeq-internal-methods html
easyRNASeq-island-methods html
easyRNASeq-package html
Rd warning: C:/Users/biocbuild/bbs-3.6-bioc/tmpdir/RtmpqwcfGE/R.INSTALL104436be6bde/easyRNASeq/man/easyRNASeq-package.Rd:129: missing file link 'BamFileList'
easyRNASeq-simpleRNASeq html
easyRNASeq-summarization-internal-methods
html
easyRNASeq-summarization-methods html
easyRNASeq-synthetic-transcripts html
edgeR-methods html
file.exists-methods html
genomeIntervals-methods html
Rd warning: C:/Users/biocbuild/bbs-3.6-bioc/tmpdir/RtmpqwcfGE/R.INSTALL104436be6bde/easyRNASeq/man/genomeIntervals-methods.Rd:39: missing file link 'readGff3'
parallel-methods html
Rd warning: C:/Users/biocbuild/bbs-3.6-bioc/tmpdir/RtmpqwcfGE/R.INSTALL104436be6bde/easyRNASeq/man/parallel-methods.Rd:44: missing file link 'makePSOCKcluster'
Rd warning: C:/Users/biocbuild/bbs-3.6-bioc/tmpdir/RtmpqwcfGE/R.INSTALL104436be6bde/easyRNASeq/man/parallel-methods.Rd:45: missing file link 'stopCluster'
print-methods html
show-methods html
** building package indices
** installing vignettes
** testing if installed package can be loaded
In R CMD INSTALL
install for x64
* installing *source* package 'easyRNASeq' ...
** testing if installed package can be loaded
* MD5 sums
packaged installation of 'easyRNASeq' as easyRNASeq_2.14.0.zip
* DONE (easyRNASeq)
In R CMD INSTALL
In R CMD INSTALL
* installing to library 'C:/Users/biocbuild/bbs-3.6-bioc/R/library'
package 'easyRNASeq' successfully unpacked and MD5 sums checked
In R CMD INSTALL