Stian Lågstad
| Snapshot Date: 2018-04-11 16:45:18 -0400 (Wed, 11 Apr 2018) |
| URL: https://git.bioconductor.org/packages/chimeraviz |
| Branch: RELEASE_3_6 |
| Last Commit: ffca582 |
| Last Changed Date: 2018-03-10 19:22:02 -0400 (Sat, 10 Mar 2018) |
| Back to Multiple platform build/check report for BioC 3.6 |
|
This page was generated on 2018-04-12 13:29:07 -0400 (Thu, 12 Apr 2018).
| Package 214/1472 | Hostname | OS / Arch | INSTALL | BUILD | CHECK | BUILD BIN | ||||||
| chimeraviz 1.4.3 Stian Lågstad
| malbec1 | Linux (Ubuntu 16.04.1 LTS) / x86_64 | NotNeeded | OK | OK | | ||||||
| tokay1 | Windows Server 2012 R2 Standard / x64 | NotNeeded | OK | OK | [ OK ] | | ||||||
| veracruz1 | OS X 10.11.6 El Capitan / x86_64 | NotNeeded | OK | OK | OK | |
| Package: chimeraviz |
| Version: 1.4.3 |
| Command: cd chimeraviz.buildbin-libdir/chimeraviz && zip -r ../../chimeraviz_1.4.3.zip . & cd ../.. |
| StartedAt: 2018-04-12 04:29:44 -0400 (Thu, 12 Apr 2018) |
| EndedAt: 2018-04-12 04:30:28 -0400 (Thu, 12 Apr 2018) |
| EllapsedTime: 44.2 seconds |
| RetCode: 0 |
| Status: OK |
| PackageFile: chimeraviz_1.4.3.zip |
| PackageFileSize: 5.616 MiB |
############################################################################## ############################################################################## ### ### Running command: ### ### cd chimeraviz.buildbin-libdir/chimeraviz && zip -r ../../chimeraviz_1.4.3.zip . & cd ../.. ### ############################################################################## ############################################################################## adding: DESCRIPTION (332 bytes security) (deflated 55%) adding: doc/ (372 bytes security) (stored 0%) adding: doc/chimeraviz-vignette.html (332 bytes security) (deflated 57%) adding: doc/chimeraviz-vignette.R (332 bytes security) (deflated 86%) adding: doc/chimeraviz-vignette.Rmd (332 bytes security) (deflated 75%) adding: doc/index.html (332 bytes security) (deflated 60%) adding: extdata/ (372 bytes security) (stored 0%) adding: extdata/5267readsAligned.bam (332 bytes security) (deflated 1%) adding: extdata/5267readsAligned.bam.bai (332 bytes security) (deflated 58%) adding: extdata/defuse_833ke_results.filtered.tsv (332 bytes security) (deflated 62%) adding: extdata/ericscript_SRR1657556.results.total.tsv (332 bytes security) (deflated 53%) adding: extdata/fusion5267and11759reads.bam (332 bytes security) (deflated 0%) adding: extdata/fusion5267and11759reads.bam.bai (332 bytes security) (deflated 99%) adding: extdata/fusion5267and11759reads.bedGraph (332 bytes security) (deflated 73%) adding: extdata/fusioncatcher_833ke_final-list-candidate-fusion-genes.txt (332 bytes security) (deflated 72%) adding: extdata/FusionMap_01_TestDataset_InputFastq.FusionReport.txt (332 bytes security) (deflated 62%) adding: extdata/Homo_sapiens.GRCh37.74.sqlite (332 bytes security) (deflated 81%) adding: extdata/Homo_sapiens.GRCh37.74_subset.gtf (332 bytes security) (deflated 95%) adding: extdata/infusion_fusions.txt (332 bytes security) (deflated 55%) adding: extdata/jaffa_results.csv (332 bytes security) (deflated 69%) adding: extdata/PRADA.acc.fusion.fq.TAF.tsv (332 bytes security) (deflated 56%) adding: extdata/protein_domains_5267.bed (332 bytes security) (deflated 54%) adding: extdata/reads.1.fq (332 bytes security) (deflated 71%) adding: extdata/reads.2.fq (332 bytes security) (deflated 84%) adding: extdata/reads_supporting_defuse_fusion_5267.1.fq (332 bytes security) (deflated 59%) adding: extdata/reads_supporting_defuse_fusion_5267.2.fq (332 bytes security) (deflated 61%) adding: extdata/soapfuse_833ke_final.Fusion.specific.for.genes (332 bytes security) (deflated 65%) adding: extdata/star-fusion.fusion_candidates.final.abridged.txt (332 bytes security) (deflated 63%) adding: extdata/UCSC.HG19.Human.CytoBandIdeogram.txt (332 bytes security) (deflated 80%) adding: extdata/UCSC.HG38.Human.CytoBandIdeogram.txt (332 bytes security) (deflated 80%) adding: help/ (372 bytes security) (stored 0%) adding: help/aliases.rds (332 bytes security) (stored 0%) adding: help/AnIndex (332 bytes security) (deflated 77%) adding: help/chimeraviz.rdb (332 bytes security) (deflated 2%) adding: help/chimeraviz.rdx (332 bytes security) (stored 0%) adding: help/paths.rds (332 bytes security) (stored 0%) adding: html/ (372 bytes security) (stored 0%) adding: html/00Index.html (332 bytes security) (deflated 83%) adding: html/addFusionReadsAlignment.html (332 bytes security) (deflated 56%) adding: html/chimeraviz-internals-fusionsToGeneLabelData.html (332 bytes security) (deflated 52%) adding: html/chimeraviz-internals-fusionsToLinkData.html (332 bytes security) (deflated 55%) adding: html/chimeraviz-internals-scaleListToInterval.html (332 bytes security) (deflated 53%) adding: html/chimeraviz.html (332 bytes security) (deflated 45%) adding: html/createFusionReport.html (332 bytes security) (deflated 53%) adding: html/decideTranscriptCategory.html (332 bytes security) (deflated 58%) adding: html/downShift.html (332 bytes security) (deflated 48%) adding: html/downstreamPartnerGene.html (332 bytes security) (deflated 64%) adding: html/fetchReadsFromFastq.html (332 bytes security) (deflated 59%) adding: html/Fusion-class.html (332 bytes security) (deflated 58%) adding: html/fusionSpanningReadsCount.html (332 bytes security) (deflated 52%) adding: html/fusionSplitReadsCount.html (332 bytes security) (deflated 52%) adding: html/fusionToDataFrame.html (332 bytes security) (deflated 51%) adding: html/getEnsemblIds.html (332 bytes security) (deflated 57%) adding: html/getFusionByChromosome.html (332 bytes security) (deflated 52%) adding: html/getFusionByGeneName.html (332 bytes security) (deflated 51%) adding: html/getFusionById.html (332 bytes security) (deflated 50%) adding: html/getTranscriptsEnsembldb.html (332 bytes security) (deflated 54%) adding: html/importDefuse.html (332 bytes security) (deflated 54%) adding: html/importEricscript.html (332 bytes security) (deflated 54%) adding: html/importFunctionNonUCSC.html (332 bytes security) (deflated 51%) adding: html/importFusioncatcher.html (332 bytes security) (deflated 56%) adding: html/importFusionmap.html (332 bytes security) (deflated 54%) adding: html/importInfusion.html (332 bytes security) (deflated 53%) adding: html/importJaffa.html (332 bytes security) (deflated 53%) adding: html/importPrada.html (332 bytes security) (deflated 53%) adding: html/importSoapfuse.html (332 bytes security) (deflated 54%) adding: html/importStarfusion.html (332 bytes security) (deflated 55%) adding: html/PartnerGene-class.html (332 bytes security) (deflated 58%) adding: html/partnerGeneEnsemblId.html (332 bytes security) (deflated 63%) adding: html/partnerGeneJunctionSequence.html (332 bytes security) (deflated 54%) adding: html/plotCircle.html (332 bytes security) (deflated 49%) adding: html/plotFusion.html (332 bytes security) (deflated 68%) adding: html/plotFusionReads.html (332 bytes security) (deflated 56%) adding: html/plotFusionTranscript.html (332 bytes security) (deflated 66%) adding: html/plotFusionTranscriptsGraph.html (332 bytes security) (deflated 55%) adding: html/plotFusionTranscriptWithProteinDomain.html (332 bytes security) (deflated 63%) adding: html/plotTranscripts.html (332 bytes security) (deflated 67%) adding: html/R.css (332 bytes security) (deflated 75%) adding: html/raw_cytobandhg19.html (332 bytes security) (deflated 42%) adding: html/raw_cytobandhg38.html (332 bytes security) (deflated 43%) adding: html/raw_defuse.html (332 bytes security) (deflated 51%) adding: html/raw_ericscript.html (332 bytes security) (deflated 42%) adding: html/raw_fusion5267proteindomains.html (332 bytes security) (deflated 47%) adding: html/raw_fusion5267reads.html (332 bytes security) (deflated 49%) adding: html/raw_fusion5267readsBedGraph.html (332 bytes security) (deflated 49%) adding: html/raw_fusioncatcher.html (332 bytes security) (deflated 43%) adding: html/raw_fusionmap.html (332 bytes security) (deflated 43%) adding: html/raw_Homo_sapiens.GRCh37.74.html (332 bytes security) (deflated 57%) adding: html/raw_infusion.html (332 bytes security) (deflated 43%) adding: html/raw_jaffa.html (332 bytes security) (deflated 42%) adding: html/raw_prada.html (332 bytes security) (deflated 41%) adding: html/raw_soapfuse.html (332 bytes security) (deflated 41%) adding: html/raw_starfusion.html (332 bytes security) (deflated 43%) adding: html/selectTranscript.html (332 bytes security) (deflated 56%) adding: html/show-Fusion-method.html (332 bytes security) (deflated 48%) adding: html/show-PartnerGene-method.html (332 bytes security) (deflated 49%) adding: html/splitOnUtrAndAddFeature.html (332 bytes security) (deflated 54%) adding: html/upstreamPartnerGene.html (332 bytes security) (deflated 64%) adding: html/writeFusionReference.html (332 bytes security) (deflated 53%) adding: INDEX (332 bytes security) (deflated 73%) adding: MD5 (332 bytes security) (deflated 51%) adding: Meta/ (372 bytes security) (stored 0%) adding: Meta/features.rds (332 bytes security) (stored 0%) adding: Meta/hsearch.rds (332 bytes security) (stored 0%) adding: Meta/links.rds (332 bytes security) (stored 0%) adding: Meta/nsInfo.rds (332 bytes security) (stored 0%) adding: Meta/package.rds (332 bytes security) (stored 0%) adding: Meta/Rd.rds (332 bytes security) (stored 0%) adding: Meta/vignette.rds (332 bytes security) (stored 0%) adding: NAMESPACE (332 bytes security) (deflated 65%) adding: NEWS (332 bytes security) (deflated 33%) adding: R/ (372 bytes security) (stored 0%) adding: R/chimeraviz (332 bytes security) (deflated 41%) adding: R/chimeraviz.rdb (332 bytes security) (deflated 24%) adding: R/chimeraviz.rdx (332 bytes security) (stored 0%) adding: reports/ (372 bytes security) (stored 0%) adding: reports/fusionListReport.Rmd (332 bytes security) (deflated 46%) adding: scripts/ (372 bytes security) (stored 0%) adding: scripts/bowtie.R (332 bytes security) (deflated 73%) adding: scripts/rsubread.R (332 bytes security) (deflated 69%)