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INSTALL report for biomformat on tokay1

This page was generated on 2018-04-12 13:27:12 -0400 (Thu, 12 Apr 2018).

Package 135/1472HostnameOS / ArchINSTALLBUILDCHECKBUILD BIN
biomformat 1.6.0
Paul J. McMurdie
Snapshot Date: 2018-04-11 16:45:18 -0400 (Wed, 11 Apr 2018)
URL: https://git.bioconductor.org/packages/biomformat
Branch: RELEASE_3_6
Last Commit: 61fb8c7
Last Changed Date: 2017-10-30 12:41:10 -0400 (Mon, 30 Oct 2017)
malbec1 Linux (Ubuntu 16.04.1 LTS) / x86_64  OK  OK  OK UNNEEDED, same version exists in internal repository
tokay1 Windows Server 2012 R2 Standard / x64 [ OK ] OK  WARNINGS  OK UNNEEDED, same version exists in internal repository
veracruz1 OS X 10.11.6 El Capitan / x86_64  OK  OK  OK  OK UNNEEDED, same version exists in internal repository

Summary

Package: biomformat
Version: 1.6.0
Command: rm -rf biomformat.buildbin-libdir && mkdir biomformat.buildbin-libdir && C:\cygwin\bin\curl.exe -O https://malbec1.bioconductor.org/BBS/3.6/bioc/src/contrib/biomformat_1.6.0.tar.gz && C:\Users\biocbuild\bbs-3.6-bioc\R\bin\R.exe CMD INSTALL --build --library=biomformat.buildbin-libdir --merge-multiarch biomformat_1.6.0.tar.gz && C:\Users\biocbuild\bbs-3.6-bioc\R\bin\R.exe CMD INSTALL biomformat_1.6.0.zip && rm biomformat_1.6.0.tar.gz biomformat_1.6.0.zip
StartedAt: 2018-04-11 18:30:40 -0400 (Wed, 11 Apr 2018)
EndedAt: 2018-04-11 18:31:44 -0400 (Wed, 11 Apr 2018)
EllapsedTime: 64.6 seconds
RetCode: 0
Status:  OK  

Command output

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###
### Running command:
###
###   rm -rf biomformat.buildbin-libdir && mkdir biomformat.buildbin-libdir  && C:\cygwin\bin\curl.exe -O https://malbec1.bioconductor.org/BBS/3.6/bioc/src/contrib/biomformat_1.6.0.tar.gz && C:\Users\biocbuild\bbs-3.6-bioc\R\bin\R.exe CMD INSTALL --build --library=biomformat.buildbin-libdir --merge-multiarch biomformat_1.6.0.tar.gz && C:\Users\biocbuild\bbs-3.6-bioc\R\bin\R.exe CMD INSTALL biomformat_1.6.0.zip  && rm biomformat_1.6.0.tar.gz biomformat_1.6.0.zip
###
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install for i386

* installing *source* package 'biomformat' ...
** R
** inst
** preparing package for lazy loading
Creating a generic function for 'nrow' from package 'base' in package 'biomformat'
Creating a generic function for 'ncol' from package 'base' in package 'biomformat'
Creating a generic function for 'rownames' from package 'base' in package 'biomformat'
Creating a generic function for 'colnames' from package 'base' in package 'biomformat'
** help
*** installing help indices
  converting help for package 'biomformat'
    finding HTML links ... done
    biom-class                              html  
    biom-methods                            html  
    finding level-2 HTML links ... done

    biom-package                            html  
    biom_data-methods                       html  
    biom_shape-methods                      html  
    colnames-methods                        html  
    header-methods                          html  
    make_biom                               html  
    matrix_element_type-methods             html  
    ncol-methods                            html  
Rd warning: C:/Users/biocbuild/bbs-3.6-bioc/tmpdir/RtmpI3Eeht/R.INSTALL115c3817628d/biomformat/man/ncol-methods.Rd:6: missing file link 'ncol'
Rd warning: C:/Users/biocbuild/bbs-3.6-bioc/tmpdir/RtmpI3Eeht/R.INSTALL115c3817628d/biomformat/man/ncol-methods.Rd:19: missing file link 'ncol'
Rd warning: C:/Users/biocbuild/bbs-3.6-bioc/tmpdir/RtmpI3Eeht/R.INSTALL115c3817628d/biomformat/man/ncol-methods.Rd:31: missing file link 'ncol'
    nrow-methods                            html  
    observation_metadata-methods            html  
    read_biom                               html  
    read_hdf5_biom                          html  
    rownames-methods                        html  
Rd warning: C:/Users/biocbuild/bbs-3.6-bioc/tmpdir/RtmpI3Eeht/R.INSTALL115c3817628d/biomformat/man/rownames-methods.Rd:6: missing file link 'rownames'
Rd warning: C:/Users/biocbuild/bbs-3.6-bioc/tmpdir/RtmpI3Eeht/R.INSTALL115c3817628d/biomformat/man/rownames-methods.Rd:19: missing file link 'rownames'
Rd warning: C:/Users/biocbuild/bbs-3.6-bioc/tmpdir/RtmpI3Eeht/R.INSTALL115c3817628d/biomformat/man/rownames-methods.Rd:31: missing file link 'rownames'
    sample_metadata-methods                 html  
    show-methods                            html  
    write_biom                              html  
** building package indices
** installing vignettes
** testing if installed package can be loaded
In R CMD INSTALL

install for x64

* installing *source* package 'biomformat' ...
** testing if installed package can be loaded
* MD5 sums
packaged installation of 'biomformat' as biomformat_1.6.0.zip
* DONE (biomformat)
In R CMD INSTALL
In R CMD INSTALL
* installing to library 'C:/Users/biocbuild/bbs-3.6-bioc/R/library'
package 'biomformat' successfully unpacked and MD5 sums checked
In R CMD INSTALL