Daniel Huebschmann
| Snapshot Date: 2018-04-11 16:45:18 -0400 (Wed, 11 Apr 2018) |
| URL: https://git.bioconductor.org/packages/YAPSA |
| Branch: RELEASE_3_6 |
| Last Commit: 6f24150 |
| Last Changed Date: 2017-10-30 12:41:21 -0400 (Mon, 30 Oct 2017) |
| Back to Multiple platform build/check report for BioC 3.6 |
|
This page was generated on 2018-04-12 13:28:38 -0400 (Thu, 12 Apr 2018).
| Package 1467/1472 | Hostname | OS / Arch | INSTALL | BUILD | CHECK | BUILD BIN | ||||||
| YAPSA 1.4.0 Daniel Huebschmann
| malbec1 | Linux (Ubuntu 16.04.1 LTS) / x86_64 | NotNeeded | OK | OK | | ||||||
| tokay1 | Windows Server 2012 R2 Standard / x64 | NotNeeded | OK | WARNINGS | [ OK ] | | ||||||
| veracruz1 | OS X 10.11.6 El Capitan / x86_64 | NotNeeded | OK | OK | OK | |
| Package: YAPSA |
| Version: 1.4.0 |
| Command: cd YAPSA.buildbin-libdir/YAPSA && zip -r ../../YAPSA_1.4.0.zip . & cd ../.. |
| StartedAt: 2018-04-12 05:08:13 -0400 (Thu, 12 Apr 2018) |
| EndedAt: 2018-04-12 05:08:44 -0400 (Thu, 12 Apr 2018) |
| EllapsedTime: 31.2 seconds |
| RetCode: 0 |
| Status: OK |
| PackageFile: YAPSA_1.4.0.zip |
| PackageFileSize: 3.008 MiB |
############################################################################## ############################################################################## ### ### Running command: ### ### cd YAPSA.buildbin-libdir/YAPSA && zip -r ../../YAPSA_1.4.0.zip . & cd ../.. ### ############################################################################## ############################################################################## adding: data/ (372 bytes security) (stored 0%) adding: data/cutoffs.rda (332 bytes security) (deflated 1%) adding: data/exchange_colour_vector.rda (332 bytes security) (stored 0%) adding: data/lymphoma_cohort_LCD_results.rda (332 bytes security) (stored 0%) adding: data/lymphoma_Nature2013_raw.rda (332 bytes security) (deflated 0%) adding: data/lymphoma_PID.rda (332 bytes security) (stored 0%) adding: data/lymphoma_test.rda (332 bytes security) (deflated 0%) adding: data/sigs.rda (332 bytes security) (stored 0%) adding: data/targetCapture_cor_factors.rda (332 bytes security) (deflated 1%) adding: DESCRIPTION (332 bytes security) (deflated 43%) adding: doc/ (372 bytes security) (stored 0%) adding: doc/index.html (332 bytes security) (deflated 58%) adding: doc/YAPSA.html (332 bytes security) (deflated 53%) adding: doc/YAPSA.R (332 bytes security) (deflated 81%) adding: doc/YAPSA.Rmd (332 bytes security) (deflated 72%) adding: foreign/ (372 bytes security) (stored 0%) adding: foreign/annotate_vcf.pl (332 bytes security) (deflated 68%) adding: foreign/kmer_frequencies.pl (332 bytes security) (deflated 52%) adding: help/ (372 bytes security) (stored 0%) adding: help/aliases.rds (332 bytes security) (stored 0%) adding: help/AnIndex (332 bytes security) (deflated 75%) adding: help/paths.rds (332 bytes security) (stored 0%) adding: help/YAPSA.rdb (332 bytes security) (deflated 2%) adding: help/YAPSA.rdx (332 bytes security) (stored 0%) adding: html/ (372 bytes security) (stored 0%) adding: html/00Index.html (332 bytes security) (deflated 82%) adding: html/add_annotation.html (332 bytes security) (deflated 62%) adding: html/add_as_fist_to_list.html (332 bytes security) (deflated 51%) adding: html/aggregate_exposures_by_category.html (332 bytes security) (deflated 61%) adding: html/annotate_intermut_dist_cohort.html (332 bytes security) (deflated 69%) adding: html/annotate_intermut_dist_PID.html (332 bytes security) (deflated 65%) adding: html/annotation_exposures_barplot.html (332 bytes security) (deflated 70%) adding: html/annotation_heatmap_exposures.html (332 bytes security) (deflated 65%) adding: html/attribute_nucleotide_exchanges.html (332 bytes security) (deflated 57%) adding: html/build_gene_list_for_pathway.html (332 bytes security) (deflated 57%) adding: html/compare_exposures.html (332 bytes security) (deflated 64%) adding: html/compare_sets.html (332 bytes security) (deflated 60%) adding: html/compare_SMCs.html (332 bytes security) (deflated 62%) adding: html/compare_to_catalogues.html (332 bytes security) (deflated 53%) adding: html/complex_heatmap_exposures.html (332 bytes security) (deflated 65%) adding: html/compute_comparison_stat_df.html (332 bytes security) (deflated 49%) adding: html/cosineDist.html (332 bytes security) (deflated 49%) adding: html/create_mutation_catalogue_from_df.html (332 bytes security) (deflated 69%) adding: html/create_mutation_catalogue_from_VR.html (332 bytes security) (deflated 65%) adding: html/cutoffs.html (332 bytes security) (deflated 70%) adding: html/cut_breaks_as_intervals.html (332 bytes security) (deflated 59%) adding: html/exampleYAPSA.html (332 bytes security) (deflated 76%) adding: html/exchange_colour_vector.html (332 bytes security) (deflated 46%) adding: html/exposures_barplot.html (332 bytes security) (deflated 63%) adding: html/extract_names_from_gene_list.html (332 bytes security) (deflated 54%) adding: html/find_affected_PIDs.html (332 bytes security) (deflated 55%) adding: html/get_extreme_PIDs.html (332 bytes security) (deflated 50%) adding: html/hclust_exposures.html (332 bytes security) (deflated 66%) adding: html/LCD.html (332 bytes security) (deflated 61%) adding: html/LCD_complex_cutoff.html (332 bytes security) (deflated 69%) adding: html/makeVRangesFromDataFrame.html (332 bytes security) (deflated 68%) adding: html/make_catalogue_strata_df.html (332 bytes security) (deflated 62%) adding: html/make_comparison_matrix.html (332 bytes security) (deflated 61%) adding: html/make_strata_df.html (332 bytes security) (deflated 65%) adding: html/make_subgroups_df.html (332 bytes security) (deflated 61%) adding: html/melt_exposures.html (332 bytes security) (deflated 48%) adding: html/merge_exposures.html (332 bytes security) (deflated 51%) adding: html/normalizeMotifs_otherRownames.html (332 bytes security) (deflated 57%) adding: html/normalize_df_per_dim.html (332 bytes security) (deflated 71%) adding: html/plotExchangeSpectra.html (332 bytes security) (deflated 56%) adding: html/plot_exposures.html (332 bytes security) (deflated 67%) adding: html/plot_SMC.html (332 bytes security) (deflated 64%) adding: html/plot_strata.html (332 bytes security) (deflated 56%) adding: html/R.css (332 bytes security) (deflated 75%) adding: html/repeat_df.html (332 bytes security) (deflated 53%) adding: html/run_annotate_vcf_pl.html (332 bytes security) (deflated 65%) adding: html/run_comparison_catalogues.html (332 bytes security) (deflated 60%) adding: html/run_comparison_general.html (332 bytes security) (deflated 64%) adding: html/run_kmer_frequency_correction.html (332 bytes security) (deflated 62%) adding: html/run_kmer_frequency_normalization.html (332 bytes security) (deflated 60%) adding: html/run_plot_strata_general.html (332 bytes security) (deflated 60%) adding: html/run_SMC.html (332 bytes security) (deflated 68%) adding: html/shapiro_if_possible.html (332 bytes security) (deflated 53%) adding: html/sigs.html (332 bytes security) (deflated 69%) adding: html/split_exposures_by_subgroups.html (332 bytes security) (deflated 61%) adding: html/stat_plot_subgroups.html (332 bytes security) (deflated 62%) adding: html/stat_test_SMC.html (332 bytes security) (deflated 65%) adding: html/stat_test_subgroups.html (332 bytes security) (deflated 63%) adding: html/stderrmean.html (332 bytes security) (deflated 50%) adding: html/sum_over_list_of_df.html (332 bytes security) (deflated 53%) adding: html/targetCapture_cor_factors.html (332 bytes security) (deflated 52%) adding: html/test_exposureAffected.html (332 bytes security) (deflated 59%) adding: html/test_gene_list_in_exposures.html (332 bytes security) (deflated 57%) adding: html/transform_rownames_R_to_MATLAB.html (332 bytes security) (deflated 65%) adding: html/translate_to_hg19.html (332 bytes security) (deflated 63%) adding: html/trellis_rainfall_plot.html (332 bytes security) (deflated 62%) adding: html/YAPSA.html (332 bytes security) (deflated 47%) adding: INDEX (332 bytes security) (deflated 71%) adding: MD5 (332 bytes security) (deflated 50%) adding: Meta/ (372 bytes security) (stored 0%) adding: Meta/data.rds (332 bytes security) (stored 0%) adding: Meta/features.rds (332 bytes security) (stored 0%) adding: Meta/hsearch.rds (332 bytes security) (stored 0%) adding: Meta/links.rds (332 bytes security) (stored 0%) adding: Meta/nsInfo.rds (332 bytes security) (stored 0%) adding: Meta/package.rds (332 bytes security) (stored 0%) adding: Meta/Rd.rds (332 bytes security) (stored 0%) adding: Meta/vignette.rds (332 bytes security) (stored 0%) adding: NAMESPACE (332 bytes security) (deflated 68%) adding: NEWS (332 bytes security) (deflated 1%) adding: R/ (372 bytes security) (stored 0%) adding: R/YAPSA (332 bytes security) (deflated 41%) adding: R/YAPSA.rdb (332 bytes security) (deflated 1%) adding: R/YAPSA.rdx (332 bytes security) (stored 0%)