Robert Scharpf
| Snapshot Date: 2018-04-11 16:45:18 -0400 (Wed, 11 Apr 2018) |
| URL: https://git.bioconductor.org/packages/VanillaICE |
| Branch: RELEASE_3_6 |
| Last Commit: b9ff36c |
| Last Changed Date: 2017-10-30 12:39:21 -0400 (Mon, 30 Oct 2017) |
| Back to Multiple platform build/check report for BioC 3.6 |
|
This page was generated on 2018-04-12 13:18:57 -0400 (Thu, 12 Apr 2018).
| Package 1441/1472 | Hostname | OS / Arch | INSTALL | BUILD | CHECK | BUILD BIN | ||||||
| VanillaICE 1.40.0 Robert Scharpf
| malbec1 | Linux (Ubuntu 16.04.1 LTS) / x86_64 | OK | OK | OK | | ||||||
| tokay1 | Windows Server 2012 R2 Standard / x64 | OK | OK | OK | [ OK ] | | ||||||
| veracruz1 | OS X 10.11.6 El Capitan / x86_64 | OK | OK | OK | OK | |
| Package: VanillaICE |
| Version: 1.40.0 |
| Command: cd VanillaICE.buildbin-libdir/VanillaICE && zip -r ../../VanillaICE_1.40.0.zip . & cd ../.. |
| StartedAt: 2018-04-12 05:07:32 -0400 (Thu, 12 Apr 2018) |
| EndedAt: 2018-04-12 05:08:03 -0400 (Thu, 12 Apr 2018) |
| EllapsedTime: 31.2 seconds |
| RetCode: 0 |
| Status: OK |
| PackageFile: VanillaICE_1.40.0.zip |
| PackageFileSize: 4.062 MiB |
############################################################################## ############################################################################## ### ### Running command: ### ### cd VanillaICE.buildbin-libdir/VanillaICE && zip -r ../../VanillaICE_1.40.0.zip . & cd ../.. ### ############################################################################## ############################################################################## adding: CITATION (332 bytes security) (deflated 48%) adding: data/ (372 bytes security) (stored 0%) adding: data/snp_exp.rda (332 bytes security) (stored 0%) adding: DESCRIPTION (332 bytes security) (deflated 48%) adding: doc/ (372 bytes security) (stored 0%) adding: doc/crlmmDownstream.pdf (332 bytes security) (deflated 5%) adding: doc/crlmmDownstream.R (332 bytes security) (deflated 71%) adding: doc/crlmmDownstream.Rnw (332 bytes security) (deflated 56%) adding: doc/index.html (332 bytes security) (deflated 68%) adding: doc/VanillaICE.pdf (332 bytes security) (deflated 6%) adding: doc/VanillaICE.R (332 bytes security) (deflated 79%) adding: doc/VanillaICE.Rnw (332 bytes security) (deflated 63%) adding: extdata/ (372 bytes security) (stored 0%) adding: extdata/FinalReport1664.txt (332 bytes security) (deflated 70%) adding: extdata/FinalReport1675.txt (332 bytes security) (deflated 70%) adding: extdata/FinalReport1686.txt (332 bytes security) (deflated 70%) adding: extdata/FinalReport6841.txt (332 bytes security) (deflated 70%) adding: extdata/FinalReport6872.txt (332 bytes security) (deflated 70%) adding: extdata/FinalReport6903.txt (332 bytes security) (deflated 70%) adding: extdata/sample_data.csv (332 bytes security) (deflated 57%) adding: extdata/snp_exp.rda (332 bytes security) (deflated 0%) adding: extdata/SNP_info.csv (332 bytes security) (deflated 67%) adding: help/ (372 bytes security) (stored 0%) adding: help/aliases.rds (332 bytes security) (stored 0%) adding: help/AnIndex (332 bytes security) (deflated 82%) adding: help/paths.rds (332 bytes security) (stored 0%) adding: help/VanillaICE.rdb (332 bytes security) (deflated 3%) adding: help/VanillaICE.rdx (332 bytes security) (stored 0%) adding: html/ (372 bytes security) (stored 0%) adding: html/00Index.html (332 bytes security) (deflated 87%) adding: html/acf2.html (332 bytes security) (deflated 49%) adding: html/ArrayViews-class.html (332 bytes security) (deflated 70%) adding: html/baumWelchUpdate.html (332 bytes security) (deflated 48%) adding: html/calculateEmission.html (332 bytes security) (deflated 50%) adding: html/cnvFilter.html (332 bytes security) (deflated 66%) adding: html/CopyNumScanParams.html (332 bytes security) (deflated 63%) adding: html/doUpdate.html (332 bytes security) (deflated 46%) adding: html/dropDuplicatedMapLocs.html (332 bytes security) (deflated 50%) adding: html/dropSexChrom.html (332 bytes security) (deflated 45%) adding: html/emission.html (332 bytes security) (deflated 50%) adding: html/EmissionParam-methods.html (332 bytes security) (deflated 66%) adding: html/emissionParam.html (332 bytes security) (deflated 54%) adding: html/FilterParam-class.html (332 bytes security) (deflated 61%) adding: html/filters.html (332 bytes security) (deflated 46%) adding: html/getExampleSnpExperiment.html (332 bytes security) (deflated 54%) adding: html/getHmmParams.html (332 bytes security) (deflated 47%) adding: html/HMM.html (332 bytes security) (deflated 62%) adding: html/hmm2.html (332 bytes security) (deflated 59%) adding: html/HmmGRanges-methods.html (332 bytes security) (deflated 45%) adding: html/HMMList-class.html (332 bytes security) (deflated 55%) adding: html/HMMList.html (332 bytes security) (deflated 50%) adding: html/HmmParam.html (332 bytes security) (deflated 63%) adding: html/hmmResults.html (332 bytes security) (deflated 41%) adding: html/HmmTrellisParam.html (332 bytes security) (deflated 50%) adding: html/IdiogramParam-class.html (332 bytes security) (deflated 59%) adding: html/IdiogramParams-class.html (332 bytes security) (deflated 54%) adding: html/IO.html (332 bytes security) (deflated 56%) adding: html/isHeterozygous.html (332 bytes security) (deflated 56%) adding: html/LogLik-class.html (332 bytes security) (deflated 52%) adding: html/LogLik.html (332 bytes security) (deflated 51%) adding: html/LowLevelSummaries.html (332 bytes security) (deflated 55%) adding: html/matrixOrNULL-class.html (332 bytes security) (deflated 41%) adding: html/NA_filter.html (332 bytes security) (deflated 50%) adding: html/numberFeatures.html (332 bytes security) (deflated 48%) adding: html/parsedPath.html (332 bytes security) (deflated 51%) adding: html/parseSourceFile.html (332 bytes security) (deflated 57%) adding: html/plotting.html (332 bytes security) (deflated 59%) adding: html/probability.html (332 bytes security) (deflated 47%) adding: html/R.css (332 bytes security) (deflated 75%) adding: html/rescale.html (332 bytes security) (deflated 52%) adding: html/robust-statistics.html (332 bytes security) (deflated 53%) adding: html/segs.html (332 bytes security) (deflated 45%) adding: html/snpArrayAssays.html (332 bytes security) (deflated 51%) adding: html/SnpArrayExperiment-class.html (332 bytes security) (deflated 61%) adding: html/SnpExperiment.html (332 bytes security) (deflated 48%) adding: html/SnpGRanges.html (332 bytes security) (deflated 54%) adding: html/snp_exp.html (332 bytes security) (deflated 41%) adding: html/sourcePaths.html (332 bytes security) (deflated 48%) adding: html/start-oligoSnpSet-method.html (332 bytes security) (deflated 46%) adding: html/state-methods.html (332 bytes security) (deflated 45%) adding: html/sweepMode.html (332 bytes security) (deflated 51%) adding: html/threshold.html (332 bytes security) (deflated 53%) adding: html/TransitionParam.html (332 bytes security) (deflated 53%) adding: html/updateHmmParams.html (332 bytes security) (deflated 54%) adding: html/VanillaICE.html (332 bytes security) (deflated 47%) adding: html/viewports.html (332 bytes security) (deflated 51%) adding: html/Viterbi-methods.html (332 bytes security) (deflated 48%) adding: illumina/ (372 bytes security) (stored 0%) adding: illumina/illuminaEx.txt (332 bytes security) (deflated 67%) adding: INDEX (332 bytes security) (deflated 68%) adding: libs/ (372 bytes security) (stored 0%) adding: libs/i386/ (372 bytes security) (stored 0%) adding: libs/i386/VanillaICE.dll (332 bytes security) (deflated 58%) adding: libs/x64/ (372 bytes security) (stored 0%) adding: libs/x64/VanillaICE.dll (332 bytes security) (deflated 59%) adding: MD5 (332 bytes security) (deflated 49%) adding: Meta/ (372 bytes security) (stored 0%) adding: Meta/data.rds (332 bytes security) (stored 0%) adding: Meta/features.rds (332 bytes security) (stored 0%) adding: Meta/hsearch.rds (332 bytes security) (stored 0%) adding: Meta/links.rds (332 bytes security) (stored 0%) adding: Meta/nsInfo.rds (332 bytes security) (stored 0%) adding: Meta/package.rds (332 bytes security) (stored 0%) adding: Meta/Rd.rds (332 bytes security) (stored 0%) adding: Meta/vignette.rds (332 bytes security) (stored 0%) adding: NAMESPACE (332 bytes security) (deflated 72%) adding: NEWS (332 bytes security) (deflated 41%) adding: NEWS.Rd (332 bytes security) (deflated 46%) adding: R/ (372 bytes security) (stored 0%) adding: R/VanillaICE (332 bytes security) (deflated 41%) adding: R/VanillaICE.rdb (332 bytes security) (deflated 30%) adding: R/VanillaICE.rdx (332 bytes security) (deflated 6%) adding: scripts/ (372 bytes security) (stored 0%) adding: scripts/crlmmDownstream.pdf (332 bytes security) (deflated 4%) adding: scripts/crlmmDownstream.Rnw (332 bytes security) (deflated 59%) adding: scripts/runcrlmm.R (332 bytes security) (deflated 29%) adding: test/ (372 bytes security) (stored 0%) adding: test/crlmmDownstream.Rnw (332 bytes security) (deflated 58%) adding: unitTests/ (372 bytes security) (stored 0%) adding: unitTests/Makefile (332 bytes security) (deflated 62%) adding: unitTests/report.html (332 bytes security) (deflated 84%) adding: unitTests/report.txt (332 bytes security) (deflated 79%) adding: unitTests/reportSummary.txt (332 bytes security) (deflated 42%) adding: unitTests/TestData.R (332 bytes security) (deflated 50%) adding: unitTests/test_acf2.R (332 bytes security) (deflated 21%) adding: unitTests/test_ArrayViews.R (332 bytes security) (deflated 70%) adding: unitTests/test_BeadStudioSet.R (332 bytes security) (stored 0%) adding: unitTests/test_constraints.R (332 bytes security) (deflated 54%) adding: unitTests/test_FilterParam.R (332 bytes security) (deflated 45%) adding: unitTests/test_hmm.R (332 bytes security) (deflated 66%) adding: unitTests/test_HmmGRanges.R (332 bytes security) (deflated 56%) adding: unitTests/test_HmmParam.R (332 bytes security) (deflated 50%) adding: unitTests/test_loess.R (332 bytes security) (deflated 59%) adding: unitTests/test_oligoSetList.R (332 bytes security) (deflated 36%) adding: unitTests/test_rowMAD.R (332 bytes security) (deflated 23%) adding: unitTests/test_scaleBy.R (332 bytes security) (deflated 4%) adding: unitTests/test_SnpArrayExperiment.R (332 bytes security) (deflated 68%) adding: unitTests/test_SnpGRanges.R (332 bytes security) (deflated 34%) adding: unitTests/test_SummarizedExperiment.R (332 bytes security) (deflated 48%) adding: unitTests/test_sweepMode.R (332 bytes security) (deflated 55%) adding: unitTests/test_viterbi.R (332 bytes security) (deflated 75%)