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INSTALL report for SummarizedExperiment on tokay1

This page was generated on 2018-04-12 13:26:20 -0400 (Thu, 12 Apr 2018).

Package 1366/1472HostnameOS / ArchINSTALLBUILDCHECKBUILD BIN
SummarizedExperiment 1.8.1
Bioconductor Package Maintainer
Snapshot Date: 2018-04-11 16:45:18 -0400 (Wed, 11 Apr 2018)
URL: https://git.bioconductor.org/packages/SummarizedExperiment
Branch: RELEASE_3_6
Last Commit: 9d8a29a
Last Changed Date: 2017-12-14 21:07:26 -0400 (Thu, 14 Dec 2017)
malbec1 Linux (Ubuntu 16.04.1 LTS) / x86_64  OK  OK  OK UNNEEDED, same version exists in internal repository
tokay1 Windows Server 2012 R2 Standard / x64 [ OK ] OK  WARNINGS  OK UNNEEDED, same version exists in internal repository
veracruz1 OS X 10.11.6 El Capitan / x86_64  OK  OK  OK  OK UNNEEDED, same version exists in internal repository

Summary

Package: SummarizedExperiment
Version: 1.8.1
Command: rm -rf SummarizedExperiment.buildbin-libdir && mkdir SummarizedExperiment.buildbin-libdir && C:\cygwin\bin\curl.exe -O https://malbec1.bioconductor.org/BBS/3.6/bioc/src/contrib/SummarizedExperiment_1.8.1.tar.gz && C:\Users\biocbuild\bbs-3.6-bioc\R\bin\R.exe CMD INSTALL --build --library=SummarizedExperiment.buildbin-libdir --merge-multiarch SummarizedExperiment_1.8.1.tar.gz && C:\Users\biocbuild\bbs-3.6-bioc\R\bin\R.exe CMD INSTALL SummarizedExperiment_1.8.1.zip && rm SummarizedExperiment_1.8.1.tar.gz SummarizedExperiment_1.8.1.zip
StartedAt: 2018-04-11 18:39:06 -0400 (Wed, 11 Apr 2018)
EndedAt: 2018-04-11 18:40:11 -0400 (Wed, 11 Apr 2018)
EllapsedTime: 65.0 seconds
RetCode: 0
Status:  OK  

Command output

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###
### Running command:
###
###   rm -rf SummarizedExperiment.buildbin-libdir && mkdir SummarizedExperiment.buildbin-libdir  && C:\cygwin\bin\curl.exe -O https://malbec1.bioconductor.org/BBS/3.6/bioc/src/contrib/SummarizedExperiment_1.8.1.tar.gz && C:\Users\biocbuild\bbs-3.6-bioc\R\bin\R.exe CMD INSTALL --build --library=SummarizedExperiment.buildbin-libdir --merge-multiarch SummarizedExperiment_1.8.1.tar.gz && C:\Users\biocbuild\bbs-3.6-bioc\R\bin\R.exe CMD INSTALL SummarizedExperiment_1.8.1.zip  && rm SummarizedExperiment_1.8.1.tar.gz SummarizedExperiment_1.8.1.zip
###
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100  892k  100  892k    0     0  27.7M      0 --:--:-- --:--:-- --:--:-- 31.1M

install for i386

* installing *source* package 'SummarizedExperiment' ...
** R
** inst
** preparing package for lazy loading
** help
*** installing help indices
  converting help for package 'SummarizedExperiment'
    finding HTML links ... done
    Assays-class                            html  
    finding level-2 HTML links ... done

Rd warning: C:/Users/biocbuild/bbs-3.6-bioc/tmpdir/RtmpoN64PI/R.INSTALL12782a734814/SummarizedExperiment/man/Assays-class.Rd:117: missing file link 'SimpleList'
    RangedSummarizedExperiment-class        html  
Rd warning: C:/Users/biocbuild/bbs-3.6-bioc/tmpdir/RtmpoN64PI/R.INSTALL12782a734814/SummarizedExperiment/man/RangedSummarizedExperiment-class.Rd:116: missing file link 'DataFrame'
Rd warning: C:/Users/biocbuild/bbs-3.6-bioc/tmpdir/RtmpoN64PI/R.INSTALL12782a734814/SummarizedExperiment/man/RangedSummarizedExperiment-class.Rd:119: missing file link 'DataFrame'
Rd warning: C:/Users/biocbuild/bbs-3.6-bioc/tmpdir/RtmpoN64PI/R.INSTALL12782a734814/SummarizedExperiment/man/RangedSummarizedExperiment-class.Rd:122: missing file link 'GRanges'
Rd warning: C:/Users/biocbuild/bbs-3.6-bioc/tmpdir/RtmpoN64PI/R.INSTALL12782a734814/SummarizedExperiment/man/RangedSummarizedExperiment-class.Rd:123: missing file link 'GRangesList'
Rd warning: C:/Users/biocbuild/bbs-3.6-bioc/tmpdir/RtmpoN64PI/R.INSTALL12782a734814/SummarizedExperiment/man/RangedSummarizedExperiment-class.Rd:126: missing file link 'GRanges'
Rd warning: C:/Users/biocbuild/bbs-3.6-bioc/tmpdir/RtmpoN64PI/R.INSTALL12782a734814/SummarizedExperiment/man/RangedSummarizedExperiment-class.Rd:126: missing file link 'GRangesList'
Rd warning: C:/Users/biocbuild/bbs-3.6-bioc/tmpdir/RtmpoN64PI/R.INSTALL12782a734814/SummarizedExperiment/man/RangedSummarizedExperiment-class.Rd:151: missing file link 'GRanges'
Rd warning: C:/Users/biocbuild/bbs-3.6-bioc/tmpdir/RtmpoN64PI/R.INSTALL12782a734814/SummarizedExperiment/man/RangedSummarizedExperiment-class.Rd:152: missing file link 'GRangesList'
Rd warning: C:/Users/biocbuild/bbs-3.6-bioc/tmpdir/RtmpoN64PI/R.INSTALL12782a734814/SummarizedExperiment/man/RangedSummarizedExperiment-class.Rd:216: missing file link 'shift'
Rd warning: C:/Users/biocbuild/bbs-3.6-bioc/tmpdir/RtmpoN64PI/R.INSTALL12782a734814/SummarizedExperiment/man/RangedSummarizedExperiment-class.Rd:217: missing file link 'isDisjoint'
Rd warning: C:/Users/biocbuild/bbs-3.6-bioc/tmpdir/RtmpoN64PI/R.INSTALL12782a734814/SummarizedExperiment/man/RangedSummarizedExperiment-class.Rd:218: missing file link 'coverage'
Rd warning: C:/Users/biocbuild/bbs-3.6-bioc/tmpdir/RtmpoN64PI/R.INSTALL12782a734814/SummarizedExperiment/man/RangedSummarizedExperiment-class.Rd:219: missing file link 'findOverlaps'
Rd warning: C:/Users/biocbuild/bbs-3.6-bioc/tmpdir/RtmpoN64PI/R.INSTALL12782a734814/SummarizedExperiment/man/RangedSummarizedExperiment-class.Rd:220: missing file link 'nearest'
Rd warning: C:/Users/biocbuild/bbs-3.6-bioc/tmpdir/RtmpoN64PI/R.INSTALL12782a734814/SummarizedExperiment/man/RangedSummarizedExperiment-class.Rd:264: missing file link 'shift'
Rd warning: C:/Users/biocbuild/bbs-3.6-bioc/tmpdir/RtmpoN64PI/R.INSTALL12782a734814/SummarizedExperiment/man/RangedSummarizedExperiment-class.Rd:265: missing file link 'isDisjoint'
Rd warning: C:/Users/biocbuild/bbs-3.6-bioc/tmpdir/RtmpoN64PI/R.INSTALL12782a734814/SummarizedExperiment/man/RangedSummarizedExperiment-class.Rd:266: missing file link 'coverage'
Rd warning: C:/Users/biocbuild/bbs-3.6-bioc/tmpdir/RtmpoN64PI/R.INSTALL12782a734814/SummarizedExperiment/man/RangedSummarizedExperiment-class.Rd:267: missing file link 'findOverlaps'
Rd warning: C:/Users/biocbuild/bbs-3.6-bioc/tmpdir/RtmpoN64PI/R.INSTALL12782a734814/SummarizedExperiment/man/RangedSummarizedExperiment-class.Rd:268: missing file link 'nearest'
Rd warning: C:/Users/biocbuild/bbs-3.6-bioc/tmpdir/RtmpoN64PI/R.INSTALL12782a734814/SummarizedExperiment/man/RangedSummarizedExperiment-class.Rd:271: missing file link 'GRanges'
    SummarizedExperiment-class              html  
Rd warning: C:/Users/biocbuild/bbs-3.6-bioc/tmpdir/RtmpoN64PI/R.INSTALL12782a734814/SummarizedExperiment/man/SummarizedExperiment-class.Rd:133: missing file link 'mcols'
Rd warning: C:/Users/biocbuild/bbs-3.6-bioc/tmpdir/RtmpoN64PI/R.INSTALL12782a734814/SummarizedExperiment/man/SummarizedExperiment-class.Rd:206: missing file link 'mcols'
Rd warning: C:/Users/biocbuild/bbs-3.6-bioc/tmpdir/RtmpoN64PI/R.INSTALL12782a734814/SummarizedExperiment/man/SummarizedExperiment-class.Rd:393: missing file link 'DataFrame'
Rd warning: C:/Users/biocbuild/bbs-3.6-bioc/tmpdir/RtmpoN64PI/R.INSTALL12782a734814/SummarizedExperiment/man/SummarizedExperiment-class.Rd:393: missing file link 'SimpleList'
Rd warning: C:/Users/biocbuild/bbs-3.6-bioc/tmpdir/RtmpoN64PI/R.INSTALL12782a734814/SummarizedExperiment/man/SummarizedExperiment-class.Rd:394: missing file link 'Annotated'
Rd warning: C:/Users/biocbuild/bbs-3.6-bioc/tmpdir/RtmpoN64PI/R.INSTALL12782a734814/SummarizedExperiment/man/SummarizedExperiment-class.Rd:396: missing file link 'metadata'
Rd warning: C:/Users/biocbuild/bbs-3.6-bioc/tmpdir/RtmpoN64PI/R.INSTALL12782a734814/SummarizedExperiment/man/SummarizedExperiment-class.Rd:397: missing file link 'mcols'
    coverage-methods                        html  
Rd warning: C:/Users/biocbuild/bbs-3.6-bioc/tmpdir/RtmpoN64PI/R.INSTALL12782a734814/SummarizedExperiment/man/coverage-methods.Rd:26: missing file link 'coverage'
Rd warning: C:/Users/biocbuild/bbs-3.6-bioc/tmpdir/RtmpoN64PI/R.INSTALL12782a734814/SummarizedExperiment/man/coverage-methods.Rd:34: missing file link 'GenomicRanges'
Rd warning: C:/Users/biocbuild/bbs-3.6-bioc/tmpdir/RtmpoN64PI/R.INSTALL12782a734814/SummarizedExperiment/man/coverage-methods.Rd:34: missing file link 'GRangesList'
Rd warning: C:/Users/biocbuild/bbs-3.6-bioc/tmpdir/RtmpoN64PI/R.INSTALL12782a734814/SummarizedExperiment/man/coverage-methods.Rd:40: missing file link 'coverage'
Rd warning: C:/Users/biocbuild/bbs-3.6-bioc/tmpdir/RtmpoN64PI/R.INSTALL12782a734814/SummarizedExperiment/man/coverage-methods.Rd:42: missing file link 'GenomicRanges'
Rd warning: C:/Users/biocbuild/bbs-3.6-bioc/tmpdir/RtmpoN64PI/R.INSTALL12782a734814/SummarizedExperiment/man/coverage-methods.Rd:42: missing file link 'GRangesList'
Rd warning: C:/Users/biocbuild/bbs-3.6-bioc/tmpdir/RtmpoN64PI/R.INSTALL12782a734814/SummarizedExperiment/man/coverage-methods.Rd:47: missing file link 'coverage'
Rd warning: C:/Users/biocbuild/bbs-3.6-bioc/tmpdir/RtmpoN64PI/R.INSTALL12782a734814/SummarizedExperiment/man/coverage-methods.Rd:55: missing file link 'coverage'
Rd warning: C:/Users/biocbuild/bbs-3.6-bioc/tmpdir/RtmpoN64PI/R.INSTALL12782a734814/SummarizedExperiment/man/coverage-methods.Rd:57: missing file link 'GenomicRanges'
Rd warning: C:/Users/biocbuild/bbs-3.6-bioc/tmpdir/RtmpoN64PI/R.INSTALL12782a734814/SummarizedExperiment/man/coverage-methods.Rd:58: missing file link 'GRangesList'
    findOverlaps-methods                    html  
Rd warning: C:/Users/biocbuild/bbs-3.6-bioc/tmpdir/RtmpoN64PI/R.INSTALL12782a734814/SummarizedExperiment/man/findOverlaps-methods.Rd:43: missing file link 'findOverlaps'
Rd warning: C:/Users/biocbuild/bbs-3.6-bioc/tmpdir/RtmpoN64PI/R.INSTALL12782a734814/SummarizedExperiment/man/findOverlaps-methods.Rd:47: missing file link 'findOverlaps'
Rd warning: C:/Users/biocbuild/bbs-3.6-bioc/tmpdir/RtmpoN64PI/R.INSTALL12782a734814/SummarizedExperiment/man/findOverlaps-methods.Rd:55: missing file link 'GenomicRanges'
Rd warning: C:/Users/biocbuild/bbs-3.6-bioc/tmpdir/RtmpoN64PI/R.INSTALL12782a734814/SummarizedExperiment/man/findOverlaps-methods.Rd:55: missing file link 'GRangesList'
Rd warning: C:/Users/biocbuild/bbs-3.6-bioc/tmpdir/RtmpoN64PI/R.INSTALL12782a734814/SummarizedExperiment/man/findOverlaps-methods.Rd:63: missing file link 'findOverlaps'
Rd warning: C:/Users/biocbuild/bbs-3.6-bioc/tmpdir/RtmpoN64PI/R.INSTALL12782a734814/SummarizedExperiment/man/findOverlaps-methods.Rd:65: missing file link 'GenomicRanges'
Rd warning: C:/Users/biocbuild/bbs-3.6-bioc/tmpdir/RtmpoN64PI/R.INSTALL12782a734814/SummarizedExperiment/man/findOverlaps-methods.Rd:65: missing file link 'GRangesList'
Rd warning: C:/Users/biocbuild/bbs-3.6-bioc/tmpdir/RtmpoN64PI/R.INSTALL12782a734814/SummarizedExperiment/man/findOverlaps-methods.Rd:70: missing file link 'findOverlaps'
Rd warning: C:/Users/biocbuild/bbs-3.6-bioc/tmpdir/RtmpoN64PI/R.INSTALL12782a734814/SummarizedExperiment/man/findOverlaps-methods.Rd:78: missing file link 'findOverlaps'
Rd warning: C:/Users/biocbuild/bbs-3.6-bioc/tmpdir/RtmpoN64PI/R.INSTALL12782a734814/SummarizedExperiment/man/findOverlaps-methods.Rd:80: missing file link 'GenomicRanges'
Rd warning: C:/Users/biocbuild/bbs-3.6-bioc/tmpdir/RtmpoN64PI/R.INSTALL12782a734814/SummarizedExperiment/man/findOverlaps-methods.Rd:81: missing file link 'GRangesList'
    inter-range-methods                     html  
Rd warning: C:/Users/biocbuild/bbs-3.6-bioc/tmpdir/RtmpoN64PI/R.INSTALL12782a734814/SummarizedExperiment/man/inter-range-methods.Rd:30: missing file link 'isDisjoint'
Rd warning: C:/Users/biocbuild/bbs-3.6-bioc/tmpdir/RtmpoN64PI/R.INSTALL12782a734814/SummarizedExperiment/man/inter-range-methods.Rd:38: missing file link 'GenomicRanges'
Rd warning: C:/Users/biocbuild/bbs-3.6-bioc/tmpdir/RtmpoN64PI/R.INSTALL12782a734814/SummarizedExperiment/man/inter-range-methods.Rd:38: missing file link 'GRangesList'
Rd warning: C:/Users/biocbuild/bbs-3.6-bioc/tmpdir/RtmpoN64PI/R.INSTALL12782a734814/SummarizedExperiment/man/inter-range-methods.Rd:48: missing file link 'isDisjoint'
Rd warning: C:/Users/biocbuild/bbs-3.6-bioc/tmpdir/RtmpoN64PI/R.INSTALL12782a734814/SummarizedExperiment/man/inter-range-methods.Rd:50: missing file link 'GenomicRanges'
Rd warning: C:/Users/biocbuild/bbs-3.6-bioc/tmpdir/RtmpoN64PI/R.INSTALL12782a734814/SummarizedExperiment/man/inter-range-methods.Rd:50: missing file link 'GRangesList'
Rd warning: C:/Users/biocbuild/bbs-3.6-bioc/tmpdir/RtmpoN64PI/R.INSTALL12782a734814/SummarizedExperiment/man/inter-range-methods.Rd:55: missing file link 'isDisjoint'
Rd warning: C:/Users/biocbuild/bbs-3.6-bioc/tmpdir/RtmpoN64PI/R.INSTALL12782a734814/SummarizedExperiment/man/inter-range-methods.Rd:63: missing file link 'isDisjoint'
Rd warning: C:/Users/biocbuild/bbs-3.6-bioc/tmpdir/RtmpoN64PI/R.INSTALL12782a734814/SummarizedExperiment/man/inter-range-methods.Rd:65: missing file link 'GenomicRanges'
Rd warning: C:/Users/biocbuild/bbs-3.6-bioc/tmpdir/RtmpoN64PI/R.INSTALL12782a734814/SummarizedExperiment/man/inter-range-methods.Rd:66: missing file link 'GRangesList'
    intra-range-methods                     html  
Rd warning: C:/Users/biocbuild/bbs-3.6-bioc/tmpdir/RtmpoN64PI/R.INSTALL12782a734814/SummarizedExperiment/man/intra-range-methods.Rd:57: missing file link 'shift'
Rd warning: C:/Users/biocbuild/bbs-3.6-bioc/tmpdir/RtmpoN64PI/R.INSTALL12782a734814/SummarizedExperiment/man/intra-range-methods.Rd:61: missing file link 'shift'
Rd warning: C:/Users/biocbuild/bbs-3.6-bioc/tmpdir/RtmpoN64PI/R.INSTALL12782a734814/SummarizedExperiment/man/intra-range-methods.Rd:65: missing file link 'shift'
Rd warning: C:/Users/biocbuild/bbs-3.6-bioc/tmpdir/RtmpoN64PI/R.INSTALL12782a734814/SummarizedExperiment/man/intra-range-methods.Rd:69: missing file link 'shift'
Rd warning: C:/Users/biocbuild/bbs-3.6-bioc/tmpdir/RtmpoN64PI/R.INSTALL12782a734814/SummarizedExperiment/man/intra-range-methods.Rd:73: missing file link 'shift'
Rd warning: C:/Users/biocbuild/bbs-3.6-bioc/tmpdir/RtmpoN64PI/R.INSTALL12782a734814/SummarizedExperiment/man/intra-range-methods.Rd:81: missing file link 'GenomicRanges'
Rd warning: C:/Users/biocbuild/bbs-3.6-bioc/tmpdir/RtmpoN64PI/R.INSTALL12782a734814/SummarizedExperiment/man/intra-range-methods.Rd:81: missing file link 'GRangesList'
Rd warning: C:/Users/biocbuild/bbs-3.6-bioc/tmpdir/RtmpoN64PI/R.INSTALL12782a734814/SummarizedExperiment/man/intra-range-methods.Rd:91: missing file link 'shift'
Rd warning: C:/Users/biocbuild/bbs-3.6-bioc/tmpdir/RtmpoN64PI/R.INSTALL12782a734814/SummarizedExperiment/man/intra-range-methods.Rd:93: missing file link 'GenomicRanges'
Rd warning: C:/Users/biocbuild/bbs-3.6-bioc/tmpdir/RtmpoN64PI/R.INSTALL12782a734814/SummarizedExperiment/man/intra-range-methods.Rd:93: missing file link 'GRangesList'
Rd warning: C:/Users/biocbuild/bbs-3.6-bioc/tmpdir/RtmpoN64PI/R.INSTALL12782a734814/SummarizedExperiment/man/intra-range-methods.Rd:101: missing file link 'shift'
Rd warning: C:/Users/biocbuild/bbs-3.6-bioc/tmpdir/RtmpoN64PI/R.INSTALL12782a734814/SummarizedExperiment/man/intra-range-methods.Rd:103: missing file link 'GenomicRanges'
Rd warning: C:/Users/biocbuild/bbs-3.6-bioc/tmpdir/RtmpoN64PI/R.INSTALL12782a734814/SummarizedExperiment/man/intra-range-methods.Rd:104: missing file link 'GRangesList'
    makeSummarizedExperimentFromDataFrame   html  
Rd warning: C:/Users/biocbuild/bbs-3.6-bioc/tmpdir/RtmpoN64PI/R.INSTALL12782a734814/SummarizedExperiment/man/makeSummarizedExperimentFromDataFrame.Rd:31: missing file link 'DataFrame'
    makeSummarizedExperimentFromExpressionSet
                                            html  
Rd warning: C:/Users/biocbuild/bbs-3.6-bioc/tmpdir/RtmpoN64PI/R.INSTALL12782a734814/SummarizedExperiment/man/makeSummarizedExperimentFromExpressionSet.Rd:18: missing file link 'ExpressionSet'
Rd warning: C:/Users/biocbuild/bbs-3.6-bioc/tmpdir/RtmpoN64PI/R.INSTALL12782a734814/SummarizedExperiment/man/makeSummarizedExperimentFromExpressionSet.Rd:20: missing file link 'ExpressionSet'
Rd warning: C:/Users/biocbuild/bbs-3.6-bioc/tmpdir/RtmpoN64PI/R.INSTALL12782a734814/SummarizedExperiment/man/makeSummarizedExperimentFromExpressionSet.Rd:39: missing file link 'ExpressionSet'
Rd warning: C:/Users/biocbuild/bbs-3.6-bioc/tmpdir/RtmpoN64PI/R.INSTALL12782a734814/SummarizedExperiment/man/makeSummarizedExperimentFromExpressionSet.Rd:42: missing file link 'ExpressionSet'
Rd warning: C:/Users/biocbuild/bbs-3.6-bioc/tmpdir/RtmpoN64PI/R.INSTALL12782a734814/SummarizedExperiment/man/makeSummarizedExperimentFromExpressionSet.Rd:45: missing file link 'rownames'
Rd warning: C:/Users/biocbuild/bbs-3.6-bioc/tmpdir/RtmpoN64PI/R.INSTALL12782a734814/SummarizedExperiment/man/makeSummarizedExperimentFromExpressionSet.Rd:45: missing file link 'GRanges'
Rd warning: C:/Users/biocbuild/bbs-3.6-bioc/tmpdir/RtmpoN64PI/R.INSTALL12782a734814/SummarizedExperiment/man/makeSummarizedExperimentFromExpressionSet.Rd:47: missing file link 'ExpressionSet'
Rd warning: C:/Users/biocbuild/bbs-3.6-bioc/tmpdir/RtmpoN64PI/R.INSTALL12782a734814/SummarizedExperiment/man/makeSummarizedExperimentFromExpressionSet.Rd:64: missing file link 'ExpressionSet'
Rd warning: C:/Users/biocbuild/bbs-3.6-bioc/tmpdir/RtmpoN64PI/R.INSTALL12782a734814/SummarizedExperiment/man/makeSummarizedExperimentFromExpressionSet.Rd:70: missing file link 'ExpressionSet'
Rd warning: C:/Users/biocbuild/bbs-3.6-bioc/tmpdir/RtmpoN64PI/R.INSTALL12782a734814/SummarizedExperiment/man/makeSummarizedExperimentFromExpressionSet.Rd:79: missing file link 'ExpressionSet'
Rd warning: C:/Users/biocbuild/bbs-3.6-bioc/tmpdir/RtmpoN64PI/R.INSTALL12782a734814/SummarizedExperiment/man/makeSummarizedExperimentFromExpressionSet.Rd:81: missing file link 'TxDb'
    nearest-methods                         html  
Rd warning: C:/Users/biocbuild/bbs-3.6-bioc/tmpdir/RtmpoN64PI/R.INSTALL12782a734814/SummarizedExperiment/man/nearest-methods.Rd:66: missing file link 'nearest'
Rd warning: C:/Users/biocbuild/bbs-3.6-bioc/tmpdir/RtmpoN64PI/R.INSTALL12782a734814/SummarizedExperiment/man/nearest-methods.Rd:79: missing file link 'GenomicRanges'
Rd warning: C:/Users/biocbuild/bbs-3.6-bioc/tmpdir/RtmpoN64PI/R.INSTALL12782a734814/SummarizedExperiment/man/nearest-methods.Rd:79: missing file link 'GRangesList'
Rd warning: C:/Users/biocbuild/bbs-3.6-bioc/tmpdir/RtmpoN64PI/R.INSTALL12782a734814/SummarizedExperiment/man/nearest-methods.Rd:88: missing file link 'nearest'
Rd warning: C:/Users/biocbuild/bbs-3.6-bioc/tmpdir/RtmpoN64PI/R.INSTALL12782a734814/SummarizedExperiment/man/nearest-methods.Rd:90: missing file link 'GenomicRanges'
Rd warning: C:/Users/biocbuild/bbs-3.6-bioc/tmpdir/RtmpoN64PI/R.INSTALL12782a734814/SummarizedExperiment/man/nearest-methods.Rd:90: missing file link 'GRangesList'
Rd warning: C:/Users/biocbuild/bbs-3.6-bioc/tmpdir/RtmpoN64PI/R.INSTALL12782a734814/SummarizedExperiment/man/nearest-methods.Rd:95: missing file link 'nearest'
Rd warning: C:/Users/biocbuild/bbs-3.6-bioc/tmpdir/RtmpoN64PI/R.INSTALL12782a734814/SummarizedExperiment/man/nearest-methods.Rd:103: missing file link 'nearest'
Rd warning: C:/Users/biocbuild/bbs-3.6-bioc/tmpdir/RtmpoN64PI/R.INSTALL12782a734814/SummarizedExperiment/man/nearest-methods.Rd:105: missing file link 'GenomicRanges'
Rd warning: C:/Users/biocbuild/bbs-3.6-bioc/tmpdir/RtmpoN64PI/R.INSTALL12782a734814/SummarizedExperiment/man/nearest-methods.Rd:106: missing file link 'GRangesList'
    readKallisto                            html  
    saveHDF5SummarizedExperiment            html  
Rd warning: C:/Users/biocbuild/bbs-3.6-bioc/tmpdir/RtmpoN64PI/R.INSTALL12782a734814/SummarizedExperiment/man/saveHDF5SummarizedExperiment.Rd:74: missing file link 'HDF5Array'
Rd warning: C:/Users/biocbuild/bbs-3.6-bioc/tmpdir/RtmpoN64PI/R.INSTALL12782a734814/SummarizedExperiment/man/saveHDF5SummarizedExperiment.Rd:75: missing file link 'HDF5Array'
Rd warning: C:/Users/biocbuild/bbs-3.6-bioc/tmpdir/RtmpoN64PI/R.INSTALL12782a734814/SummarizedExperiment/man/saveHDF5SummarizedExperiment.Rd:82: missing file link 'HDF5Array'
Rd warning: C:/Users/biocbuild/bbs-3.6-bioc/tmpdir/RtmpoN64PI/R.INSTALL12782a734814/SummarizedExperiment/man/saveHDF5SummarizedExperiment.Rd:95: missing file link 'HDF5Array'
** building package indices
** installing vignettes
** testing if installed package can be loaded
In R CMD INSTALL

install for x64

* installing *source* package 'SummarizedExperiment' ...
** testing if installed package can be loaded
* MD5 sums
packaged installation of 'SummarizedExperiment' as SummarizedExperiment_1.8.1.zip
* DONE (SummarizedExperiment)
In R CMD INSTALL
In R CMD INSTALL
* installing to library 'C:/Users/biocbuild/bbs-3.6-bioc/R/library'
package 'SummarizedExperiment' successfully unpacked and MD5 sums checked
In R CMD INSTALL