Package: SigCheck

Version: 2.10.0

Command: rm -rf SigCheck.buildbin-libdir SigCheck.Rcheck && mkdir SigCheck.buildbin-libdir SigCheck.Rcheck && C:\Users\biocbuild\bbs-3.6-bioc\R\bin\R.exe CMD INSTALL --build --merge-multiarch --library=SigCheck.buildbin-libdir SigCheck_2.10.0.tar.gz >SigCheck.Rcheck\00install.out 2>&1 && cp SigCheck.Rcheck\00install.out SigCheck-install.out && C:\Users\biocbuild\bbs-3.6-bioc\R\bin\R.exe CMD check --library=SigCheck.buildbin-libdir --install="check:SigCheck-install.out" --force-multiarch --no-vignettes --timings SigCheck_2.10.0.tar.gz

StartedAt: 2018-04-12 03:10:45 -0400 (Thu, 12 Apr 2018)

EndedAt: 2018-04-12 03:21:53 -0400 (Thu, 12 Apr 2018)

EllapsedTime: 668.2 seconds

RetCode: 0

Status:  OK

CheckDir: SigCheck.Rcheck

Warnings: 0

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### Running command:
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###   rm -rf SigCheck.buildbin-libdir SigCheck.Rcheck && mkdir SigCheck.buildbin-libdir SigCheck.Rcheck && C:\Users\biocbuild\bbs-3.6-bioc\R\bin\R.exe CMD INSTALL --build --merge-multiarch --library=SigCheck.buildbin-libdir SigCheck_2.10.0.tar.gz >SigCheck.Rcheck\00install.out 2>&1 && cp SigCheck.Rcheck\00install.out SigCheck-install.out  &&  C:\Users\biocbuild\bbs-3.6-bioc\R\bin\R.exe CMD check --library=SigCheck.buildbin-libdir --install="check:SigCheck-install.out" --force-multiarch --no-vignettes --timings SigCheck_2.10.0.tar.gz
###
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* using log directory 'C:/Users/biocbuild/bbs-3.6-bioc/meat/SigCheck.Rcheck'
* using R version 3.4.4 (2018-03-15)
* using platform: x86_64-w64-mingw32 (64-bit)
* using session charset: ISO8859-1
* using option '--no-vignettes'
* checking for file 'SigCheck/DESCRIPTION' ... OK
* checking extension type ... Package
* this is package 'SigCheck' version '2.10.0'
* checking package namespace information ... OK
* checking package dependencies ... OK
* checking if this is a source package ... OK
* checking if there is a namespace ... OK
* checking for hidden files and directories ... OK
* checking for portable file names ... OK
* checking whether package 'SigCheck' can be installed ... OK
* checking installed package size ... OK
* checking package directory ... OK
* checking 'build' directory ... OK
* checking DESCRIPTION meta-information ... OK
* checking top-level files ... OK
* checking for left-over files ... OK
* checking index information ... OK
* checking package subdirectories ... OK
* checking R files for non-ASCII characters ... OK
* checking R files for syntax errors ... OK
* loading checks for arch 'i386'
** checking whether the package can be loaded ... OK
** checking whether the package can be loaded with stated dependencies ... OK
** checking whether the package can be unloaded cleanly ... OK
** checking whether the namespace can be loaded with stated dependencies ... OK
** checking whether the namespace can be unloaded cleanly ... OK
** checking loading without being on the library search path ... OK
* loading checks for arch 'x64'
** checking whether the package can be loaded ... OK
** checking whether the package can be loaded with stated dependencies ... OK
** checking whether the package can be unloaded cleanly ... OK
** checking whether the namespace can be loaded with stated dependencies ... OK
** checking whether the namespace can be unloaded cleanly ... OK
** checking loading without being on the library search path ... OK
* checking dependencies in R code ... OK
* checking S3 generic/method consistency ... OK
* checking replacement functions ... OK
* checking foreign function calls ... OK
* checking R code for possible problems ... NOTE
sigCheckKnown: no visible binding for global variable 'knownSignatures'
Undefined global functions or variables:
  knownSignatures
* checking Rd files ... OK
* checking Rd metadata ... OK
* checking Rd cross-references ... OK
* checking for missing documentation entries ... OK
* checking for code/documentation mismatches ... OK
* checking Rd \usage sections ... OK
* checking Rd contents ... OK
* checking for unstated dependencies in examples ... OK
* checking contents of 'data' directory ... OK
* checking data for non-ASCII characters ... OK
* checking data for ASCII and uncompressed saves ... OK
* checking installed files from 'inst/doc' ... OK
* checking files in 'vignettes' ... OK
* checking examples ...
** running examples for arch 'i386' ... OK
Examples with CPU or elapsed time > 5s
                   user system elapsed
sigCheckAll      123.09   4.74  127.83
sigCheckKnown     48.69   1.06   49.75
sigCheckPermuted  12.99   0.39   13.38
sigCheck          11.31   1.37   12.70
sigCheckPlot      12.06   0.62   12.68
sigCheckRandom     8.06   0.35    8.41
** running examples for arch 'x64' ... OK
Examples with CPU or elapsed time > 5s
                   user system elapsed
sigCheckAll      102.21   5.94  108.15
sigCheckKnown     54.54   2.13   56.66
sigCheckPermuted  16.67   1.18   17.86
sigCheckPlot      15.70   0.97   16.67
sigCheck          12.47   0.61   13.08
sigCheckRandom    10.69   0.80   11.49
* checking for unstated dependencies in vignettes ... OK
* checking package vignettes in 'inst/doc' ... OK
* checking running R code from vignettes ... SKIPPED
* checking re-building of vignette outputs ... SKIPPED
* checking PDF version of manual ... OK
* DONE

Status: 1 NOTE
See
  'C:/Users/biocbuild/bbs-3.6-bioc/meat/SigCheck.Rcheck/00check.log'
for details.

install for i386

* installing *source* package 'SigCheck' ...
** R
** data
** inst
** preparing package for lazy loading
Creating a new generic function for 'signature' in package 'SigCheck'
** help
*** installing help indices
  converting help for package 'SigCheck'
    finding HTML links ... done
    SigCheck-package                        html  
    finding level-2 HTML links ... done

    SigCheckObject-class                    html  
    classifyResults                         html  
    knownSignatures                         html  
    nkiResults                              html  
    sigCheck                                html  
    sigCheckAll                             html  
    sigCheckKnown                           html  
    sigCheckPermuted                        html  
    sigCheckPlot                            html  
    sigCheckRandom                          html  
** building package indices
** installing vignettes
** testing if installed package can be loaded
In R CMD INSTALL

install for x64

* installing *source* package 'SigCheck' ...
** testing if installed package can be loaded
* MD5 sums
packaged installation of 'SigCheck' as SigCheck_2.10.0.zip
* DONE (SigCheck)
In R CMD INSTALL
In R CMD INSTALL