Mo R. Nezami Ranjbar
| Snapshot Date: 2018-04-11 16:45:18 -0400 (Wed, 11 Apr 2018) |
| URL: https://git.bioconductor.org/packages/SIMAT |
| Branch: RELEASE_3_6 |
| Last Commit: aae6512 |
| Last Changed Date: 2017-10-30 12:40:49 -0400 (Mon, 30 Oct 2017) |
| Back to Multiple platform build/check report for BioC 3.6 |
|
This page was generated on 2018-04-12 13:25:54 -0400 (Thu, 12 Apr 2018).
| Package 1298/1472 | Hostname | OS / Arch | INSTALL | BUILD | CHECK | BUILD BIN | ||||||
| SIMAT 1.10.0 Mo R. Nezami Ranjbar
| malbec1 | Linux (Ubuntu 16.04.1 LTS) / x86_64 | NotNeeded | OK | OK | | ||||||
| tokay1 | Windows Server 2012 R2 Standard / x64 | NotNeeded | OK | [ OK ] | OK | | ||||||
| veracruz1 | OS X 10.11.6 El Capitan / x86_64 | NotNeeded | OK | OK | OK | |
| Package: SIMAT |
| Version: 1.10.0 |
| Command: rm -rf SIMAT.buildbin-libdir SIMAT.Rcheck && mkdir SIMAT.buildbin-libdir SIMAT.Rcheck && C:\Users\biocbuild\bbs-3.6-bioc\R\bin\R.exe CMD INSTALL --build --merge-multiarch --library=SIMAT.buildbin-libdir SIMAT_1.10.0.tar.gz >SIMAT.Rcheck\00install.out 2>&1 && cp SIMAT.Rcheck\00install.out SIMAT-install.out && C:\Users\biocbuild\bbs-3.6-bioc\R\bin\R.exe CMD check --library=SIMAT.buildbin-libdir --install="check:SIMAT-install.out" --force-multiarch --no-vignettes --timings SIMAT_1.10.0.tar.gz |
| StartedAt: 2018-04-12 03:13:16 -0400 (Thu, 12 Apr 2018) |
| EndedAt: 2018-04-12 03:15:02 -0400 (Thu, 12 Apr 2018) |
| EllapsedTime: 106.4 seconds |
| RetCode: 0 |
| Status: OK |
| CheckDir: SIMAT.Rcheck |
| Warnings: 0 |
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### Running command:
###
### rm -rf SIMAT.buildbin-libdir SIMAT.Rcheck && mkdir SIMAT.buildbin-libdir SIMAT.Rcheck && C:\Users\biocbuild\bbs-3.6-bioc\R\bin\R.exe CMD INSTALL --build --merge-multiarch --library=SIMAT.buildbin-libdir SIMAT_1.10.0.tar.gz >SIMAT.Rcheck\00install.out 2>&1 && cp SIMAT.Rcheck\00install.out SIMAT-install.out && C:\Users\biocbuild\bbs-3.6-bioc\R\bin\R.exe CMD check --library=SIMAT.buildbin-libdir --install="check:SIMAT-install.out" --force-multiarch --no-vignettes --timings SIMAT_1.10.0.tar.gz
###
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* using log directory 'C:/Users/biocbuild/bbs-3.6-bioc/meat/SIMAT.Rcheck'
* using R version 3.4.4 (2018-03-15)
* using platform: x86_64-w64-mingw32 (64-bit)
* using session charset: ISO8859-1
* using option '--no-vignettes'
* checking for file 'SIMAT/DESCRIPTION' ... OK
* checking extension type ... Package
* this is package 'SIMAT' version '1.10.0'
* checking package namespace information ... OK
* checking package dependencies ... OK
* checking if this is a source package ... OK
* checking if there is a namespace ... OK
* checking for hidden files and directories ... OK
* checking for portable file names ... OK
* checking whether package 'SIMAT' can be installed ... OK
* checking installed package size ... OK
* checking package directory ... OK
* checking 'build' directory ... OK
* checking DESCRIPTION meta-information ... OK
* checking top-level files ... OK
* checking for left-over files ... OK
* checking index information ... OK
* checking package subdirectories ... OK
* checking R files for non-ASCII characters ... OK
* checking R files for syntax errors ... OK
* loading checks for arch 'i386'
** checking whether the package can be loaded ... OK
** checking whether the package can be loaded with stated dependencies ... OK
** checking whether the package can be unloaded cleanly ... OK
** checking whether the namespace can be loaded with stated dependencies ... OK
** checking whether the namespace can be unloaded cleanly ... OK
** checking loading without being on the library search path ... OK
* loading checks for arch 'x64'
** checking whether the package can be loaded ... OK
** checking whether the package can be loaded with stated dependencies ... OK
** checking whether the package can be unloaded cleanly ... OK
** checking whether the namespace can be loaded with stated dependencies ... OK
** checking whether the namespace can be unloaded cleanly ... OK
** checking loading without being on the library search path ... OK
* checking dependencies in R code ... OK
* checking S3 generic/method consistency ... OK
* checking replacement functions ... OK
* checking foreign function calls ... OK
* checking R code for possible problems ... NOTE
getRIStandard: no visible global function definition for 'read.csv'
plotEIC: no visible global function definition for 'stack'
plotEIC: no visible global function definition for 'dnorm'
plotEIC: no visible global function definition for 'dev.copy'
plotEIC: no visible binding for global variable 'pdf'
plotEIC: no visible global function definition for 'dev.off'
plotTIC: no visible binding for global variable 'rt'
Undefined global functions or variables:
dev.copy dev.off dnorm pdf read.csv rt stack
Consider adding
importFrom("grDevices", "dev.copy", "dev.off", "pdf")
importFrom("stats", "dnorm", "rt")
importFrom("utils", "read.csv", "stack")
to your NAMESPACE file.
* checking Rd files ... OK
* checking Rd metadata ... OK
* checking Rd cross-references ... OK
* checking for missing documentation entries ... OK
* checking for code/documentation mismatches ... OK
* checking Rd \usage sections ... OK
* checking Rd contents ... OK
* checking for unstated dependencies in examples ... OK
* checking contents of 'data' directory ... OK
* checking data for non-ASCII characters ... OK
* checking data for ASCII and uncompressed saves ... OK
* checking installed files from 'inst/doc' ... OK
* checking files in 'vignettes' ... OK
* checking examples ...
** running examples for arch 'i386' ... OK
** running examples for arch 'x64' ... OK
* checking for unstated dependencies in 'tests' ... OK
* checking tests ...
** running tests for arch 'i386' ...
Running 'runTests.R'
OK
** running tests for arch 'x64' ...
Running 'runTests.R'
OK
* checking for unstated dependencies in vignettes ... OK
* checking package vignettes in 'inst/doc' ... OK
* checking running R code from vignettes ... SKIPPED
* checking re-building of vignette outputs ... SKIPPED
* checking PDF version of manual ... OK
* DONE
Status: 1 NOTE
See
'C:/Users/biocbuild/bbs-3.6-bioc/meat/SIMAT.Rcheck/00check.log'
for details.
SIMAT.Rcheck/00install.out
install for i386
* installing *source* package 'SIMAT' ...
** R
** data
** inst
** preparing package for lazy loading
** help
*** installing help indices
converting help for package 'SIMAT'
finding HTML links ... done
Library html
RItable html
Run html
SIMAT-package html
Targets html
getEIC html
getPeak html
getPeakScore html
getRI html
getRIStandard html
getScore html
getTarget html
getTargetTable html
optFrag html
plotEIC html
plotTIC html
putTargetTable html
readCDF html
readMSL html
target.table html
writeMSL html
** building package indices
** installing vignettes
** testing if installed package can be loaded
In R CMD INSTALL
install for x64
* installing *source* package 'SIMAT' ...
** testing if installed package can be loaded
* MD5 sums
packaged installation of 'SIMAT' as SIMAT_1.10.0.zip
* DONE (SIMAT)
In R CMD INSTALL
In R CMD INSTALL
|
SIMAT.Rcheck/tests_i386/runTests.Rout
R version 3.4.4 (2018-03-15) -- "Someone to Lean On"
Copyright (C) 2018 The R Foundation for Statistical Computing
Platform: i386-w64-mingw32/i386 (32-bit)
R is free software and comes with ABSOLUTELY NO WARRANTY.
You are welcome to redistribute it under certain conditions.
Type 'license()' or 'licence()' for distribution details.
R is a collaborative project with many contributors.
Type 'contributors()' for more information and
'citation()' on how to cite R or R packages in publications.
Type 'demo()' for some demos, 'help()' for on-line help, or
'help.start()' for an HTML browser interface to help.
Type 'q()' to quit R.
> ## function for RUnit tests
>
> BiocGenerics:::testPackage("SIMAT")
RUNIT TEST PROTOCOL -- Thu Apr 12 03:14:53 2018
***********************************************
Number of test functions: 15
Number of errors: 0
Number of failures: 0
1 Test Suite :
SIMAT RUnit Tests - 15 test functions, 0 errors, 0 failures
Number of test functions: 15
Number of errors: 0
Number of failures: 0
Warning message:
In file(con, "r") :
cannot open file 'C:/Users/biocbuild/bbs-3.6-bioc/meat/SIMAT.buildbin-libdir/SIMAT/data/Targets.MSL': No such file or directory
>
> proc.time()
user system elapsed
3.14 0.10 3.23
|
SIMAT.Rcheck/tests_x64/runTests.Rout
R version 3.4.4 (2018-03-15) -- "Someone to Lean On"
Copyright (C) 2018 The R Foundation for Statistical Computing
Platform: x86_64-w64-mingw32/x64 (64-bit)
R is free software and comes with ABSOLUTELY NO WARRANTY.
You are welcome to redistribute it under certain conditions.
Type 'license()' or 'licence()' for distribution details.
R is a collaborative project with many contributors.
Type 'contributors()' for more information and
'citation()' on how to cite R or R packages in publications.
Type 'demo()' for some demos, 'help()' for on-line help, or
'help.start()' for an HTML browser interface to help.
Type 'q()' to quit R.
> ## function for RUnit tests
>
> BiocGenerics:::testPackage("SIMAT")
RUNIT TEST PROTOCOL -- Thu Apr 12 03:14:58 2018
***********************************************
Number of test functions: 15
Number of errors: 0
Number of failures: 0
1 Test Suite :
SIMAT RUnit Tests - 15 test functions, 0 errors, 0 failures
Number of test functions: 15
Number of errors: 0
Number of failures: 0
Warning message:
In file(con, "r") :
cannot open file 'C:/Users/biocbuild/bbs-3.6-bioc/meat/SIMAT.buildbin-libdir/SIMAT/data/Targets.MSL': No such file or directory
>
> proc.time()
user system elapsed
4.64 0.09 4.71
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SIMAT.Rcheck/examples_i386/SIMAT-Ex.timings
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SIMAT.Rcheck/examples_x64/SIMAT-Ex.timings
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