Package: MoonlightR

Version: 1.4.0

Command: rm -rf MoonlightR.buildbin-libdir MoonlightR.Rcheck && mkdir MoonlightR.buildbin-libdir MoonlightR.Rcheck && C:\Users\biocbuild\bbs-3.6-bioc\R\bin\R.exe CMD INSTALL --build --merge-multiarch --library=MoonlightR.buildbin-libdir MoonlightR_1.4.0.tar.gz >MoonlightR.Rcheck\00install.out 2>&1 && cp MoonlightR.Rcheck\00install.out MoonlightR-install.out && C:\Users\biocbuild\bbs-3.6-bioc\R\bin\R.exe CMD check --library=MoonlightR.buildbin-libdir --install="check:MoonlightR-install.out" --force-multiarch --no-vignettes --timings MoonlightR_1.4.0.tar.gz

StartedAt: 2018-04-12 01:34:38 -0400 (Thu, 12 Apr 2018)

EndedAt: 2018-04-12 01:43:21 -0400 (Thu, 12 Apr 2018)

EllapsedTime: 523.3 seconds

RetCode: 0

Status:  OK

CheckDir: MoonlightR.Rcheck

Warnings: 0

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### Running command:
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###   rm -rf MoonlightR.buildbin-libdir MoonlightR.Rcheck && mkdir MoonlightR.buildbin-libdir MoonlightR.Rcheck && C:\Users\biocbuild\bbs-3.6-bioc\R\bin\R.exe CMD INSTALL --build --merge-multiarch --library=MoonlightR.buildbin-libdir MoonlightR_1.4.0.tar.gz >MoonlightR.Rcheck\00install.out 2>&1 && cp MoonlightR.Rcheck\00install.out MoonlightR-install.out  &&  C:\Users\biocbuild\bbs-3.6-bioc\R\bin\R.exe CMD check --library=MoonlightR.buildbin-libdir --install="check:MoonlightR-install.out" --force-multiarch --no-vignettes --timings MoonlightR_1.4.0.tar.gz
###
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* using log directory 'C:/Users/biocbuild/bbs-3.6-bioc/meat/MoonlightR.Rcheck'
* using R version 3.4.4 (2018-03-15)
* using platform: x86_64-w64-mingw32 (64-bit)
* using session charset: ISO8859-1
* using option '--no-vignettes'
* checking for file 'MoonlightR/DESCRIPTION' ... OK
* checking extension type ... Package
* this is package 'MoonlightR' version '1.4.0'
* checking package namespace information ... OK
* checking package dependencies ... OK
* checking if this is a source package ... OK
* checking if there is a namespace ... OK
* checking for hidden files and directories ... OK
* checking for portable file names ... OK
* checking whether package 'MoonlightR' can be installed ... OK
* checking installed package size ... NOTE
  installed size is 10.4Mb
  sub-directories of 1Mb or more:
    data   3.1Mb
    doc    7.1Mb
* checking package directory ... OK
* checking 'build' directory ... OK
* checking DESCRIPTION meta-information ... OK
* checking top-level files ... OK
* checking for left-over files ... OK
* checking index information ... OK
* checking package subdirectories ... OK
* checking R files for non-ASCII characters ... OK
* checking R files for syntax errors ... OK
* loading checks for arch 'i386'
** checking whether the package can be loaded ... OK
** checking whether the package can be loaded with stated dependencies ... OK
** checking whether the package can be unloaded cleanly ... OK
** checking whether the namespace can be loaded with stated dependencies ... OK
** checking whether the namespace can be unloaded cleanly ... OK
** checking loading without being on the library search path ... OK
* loading checks for arch 'x64'
** checking whether the package can be loaded ... OK
** checking whether the package can be loaded with stated dependencies ... OK
** checking whether the package can be unloaded cleanly ... OK
** checking whether the namespace can be loaded with stated dependencies ... OK
** checking whether the namespace can be unloaded cleanly ... OK
** checking loading without being on the library search path ... OK
* checking dependencies in R code ... OK
* checking S3 generic/method consistency ... OK
* checking replacement functions ... OK
* checking foreign function calls ... OK
* checking R code for possible problems ... OK
* checking Rd files ... OK
* checking Rd metadata ... OK
* checking Rd cross-references ... OK
* checking for missing documentation entries ... OK
* checking for code/documentation mismatches ... OK
* checking Rd \usage sections ... OK
* checking Rd contents ... OK
* checking for unstated dependencies in examples ... OK
* checking contents of 'data' directory ... OK
* checking data for non-ASCII characters ... OK
* checking data for ASCII and uncompressed saves ... OK
* checking installed files from 'inst/doc' ... OK
* checking files in 'vignettes' ... OK
* checking examples ...
** running examples for arch 'i386' ... OK
Examples with CPU or elapsed time > 5s
          user system elapsed
DPA       9.50   0.25    9.75
FEA       9.31   0.33    9.64
moonlight 8.82   0.35    9.16
URA       3.47   0.01   30.86
** running examples for arch 'x64' ... OK
Examples with CPU or elapsed time > 5s
           user system elapsed
FEA       11.49   0.18   11.69
DPA        9.14   0.16    9.29
moonlight  6.88   0.16    7.04
URA        2.91   0.00   30.07
* checking for unstated dependencies in vignettes ... OK
* checking package vignettes in 'inst/doc' ... OK
* checking running R code from vignettes ... SKIPPED
* checking re-building of vignette outputs ... SKIPPED
* checking PDF version of manual ... OK
* DONE

Status: 1 NOTE
See
  'C:/Users/biocbuild/bbs-3.6-bioc/meat/MoonlightR.Rcheck/00check.log'
for details.

install for i386

* installing *source* package 'MoonlightR' ...
** R
** data
*** moving datasets to lazyload DB
** inst
** preparing package for lazy loading
** help
*** installing help indices
  converting help for package 'MoonlightR'
    finding HTML links ... done
    DEGsmatrix                              html  
    DPA                                     html  
    DiseaseList                             html  
    EAGenes                                 html  
    FEA                                     html  
    GDCprojects                             html  
    GEO_TCGAtab                             html  
    GRN                                     html  
    GSEA                                    html  
    LPA                                     html  
    MoonlightR                              html  
    PRA                                     html  
    URA                                     html  
    dataFilt                                html  
    dataGRN                                 html  
    dataURA                                 html  
    geneInfo                                html  
    getDataGEO                              html  
    getDataTCGA                             html  
    knownDriverGenes                        html  
    listMoonlight                           html  
    moonlight                               html  
    plotCircos                              html  
    plotFEA                                 html  
    plotNetworkHive                         html  
    plotURA                                 html  
    tabGrowBlock                            html  
** building package indices
** installing vignettes
** testing if installed package can be loaded
In R CMD INSTALL

install for x64

* installing *source* package 'MoonlightR' ...
** testing if installed package can be loaded
* MD5 sums
packaged installation of 'MoonlightR' as MoonlightR_1.4.0.zip
* DONE (MoonlightR)
In R CMD INSTALL
In R CMD INSTALL