Package: INSPEcT

Version: 1.8.0

Command: /home/biocbuild/bbs-3.6-bioc/R/bin/R CMD check --no-vignettes --timings INSPEcT_1.8.0.tar.gz

StartedAt: 2018-04-12 00:25:23 -0400 (Thu, 12 Apr 2018)

EndedAt: 2018-04-12 00:30:24 -0400 (Thu, 12 Apr 2018)

EllapsedTime: 301.1 seconds

RetCode: 0

Status:  OK

CheckDir: INSPEcT.Rcheck

Warnings: 0

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### Running command:
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###   /home/biocbuild/bbs-3.6-bioc/R/bin/R CMD check --no-vignettes --timings INSPEcT_1.8.0.tar.gz
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* using log directory ‘/home/biocbuild/bbs-3.6-bioc/meat/INSPEcT.Rcheck’
* using R version 3.4.4 (2018-03-15)
* using platform: x86_64-pc-linux-gnu (64-bit)
* using session charset: UTF-8
* using option ‘--no-vignettes’
* checking for file ‘INSPEcT/DESCRIPTION’ ... OK
* checking extension type ... Package
* this is package ‘INSPEcT’ version ‘1.8.0’
* checking package namespace information ... OK
* checking package dependencies ... OK
* checking if this is a source package ... OK
* checking if there is a namespace ... OK
* checking for hidden files and directories ... OK
* checking for portable file names ... OK
* checking for sufficient/correct file permissions ... OK
* checking whether package ‘INSPEcT’ can be installed ... OK
* checking installed package size ... OK
* checking package directory ... OK
* checking ‘build’ directory ... OK
* checking DESCRIPTION meta-information ... OK
* checking top-level files ... OK
* checking for left-over files ... OK
* checking index information ... OK
* checking package subdirectories ... OK
* checking R files for non-ASCII characters ... OK
* checking R files for syntax errors ... OK
* checking whether the package can be loaded ... OK
* checking whether the package can be loaded with stated dependencies ... OK
* checking whether the package can be unloaded cleanly ... OK
* checking whether the namespace can be loaded with stated dependencies ... OK
* checking whether the namespace can be unloaded cleanly ... OK
* checking loading without being on the library search path ... OK
* checking dependencies in R code ... OK
* checking S3 generic/method consistency ... OK
* checking replacement functions ... OK
* checking foreign function calls ... OK
* checking R code for possible problems ... OK
* checking Rd files ... OK
* checking Rd metadata ... OK
* checking Rd cross-references ... OK
* checking for missing documentation entries ... OK
* checking for code/documentation mismatches ... OK
* checking Rd \usage sections ... OK
* checking Rd contents ... OK
* checking for unstated dependencies in examples ... OK
* checking contents of ‘data’ directory ... OK
* checking data for non-ASCII characters ... OK
* checking data for ASCII and uncompressed saves ... OK
* checking installed files from ‘inst/doc’ ... OK
* checking files in ‘vignettes’ ... OK
* checking examples ... OK
Examples with CPU or elapsed time > 5s
                 user system elapsed
modelRates     27.640  0.164  27.829
rocThresholds  23.640  0.036  23.696
makeSimDataset  7.952  0.252   8.337
compareSteady   7.344  0.228   7.603
makeSimModel    6.436  0.352   6.929
makeRPKMs       6.392  0.184   7.725
* checking for unstated dependencies in vignettes ... OK
* checking package vignettes in ‘inst/doc’ ... OK
* checking running R code from vignettes ... SKIPPED
* checking re-building of vignette outputs ... SKIPPED
* checking PDF version of manual ... OK
* DONE

Status: OK

* installing *source* package ‘INSPEcT’ ...
** R
** data
** inst
** preparing package for lazy loading
** help
*** installing help indices
** building package indices
** installing vignettes
** testing if installed package can be loaded
* DONE (INSPEcT)

name	user	system	elapsed
AIC-INSPEcT-method	0.012	0.000	0.010
Extract	0.168	0.000	0.171
INSPEcT_diffsteady-class	2.068	0.024	2.100
chisqmodel	0.504	0.004	0.508
chisqtest	0.004	0.000	0.008
combine	0.296	0.000	0.297
compareSteady	7.344	0.228	7.603
geneClass	0.124	0.000	0.124
getModel	0.008	0.000	0.010
inHeatmap	0.168	0.000	0.166
labeledSF	0.008	0.000	0.006
logLik	0.008	0.000	0.008
makeModelRates	0.568	0.000	0.568
makeRPKMs	6.392	0.184	7.725
makeSimDataset	7.952	0.252	8.337
makeSimModel	6.436	0.352	6.929
modelRates	27.640	0.164	27.829
modelingParams	0.016	0.000	0.014
nGenes	0.008	0.000	0.007
nTpts	0.004	0.000	0.007
newINSPEcT	1.544	0.000	1.547
plotGene	0.032	0.000	0.029
plotMA	1.136	0.012	1.150
ratePvals	0.048	0.000	0.048
ratesFirstGuess	1.648	0.012	1.661
ratesFirstGuessVar	1.716	0.024	1.741
removeModel	0.060	0.000	0.059
rocCurve	2.108	0.020	2.129
rocThresholds	23.640	0.036	23.696
sfPlot	2.120	0.008	2.129
split	0.052	0.000	0.054
testingParams	0.912	0.000	0.913
totalSF	0.008	0.000	0.007
tpts	0.008	0.000	0.006
viewModelRates	0.008	0.000	0.008