Back to Multiple platform build/check report for BioC 3.6
ABCDEF[G]HIJKLMNOPQRSTUVWXYZ

INSTALL report for GenomicFeatures on tokay1

This page was generated on 2018-04-12 13:19:51 -0400 (Thu, 12 Apr 2018).

Package 564/1472HostnameOS / ArchINSTALLBUILDCHECKBUILD BIN
GenomicFeatures 1.30.3
Bioconductor Package Maintainer
Snapshot Date: 2018-04-11 16:45:18 -0400 (Wed, 11 Apr 2018)
URL: https://git.bioconductor.org/packages/GenomicFeatures
Branch: RELEASE_3_6
Last Commit: 496bbf8
Last Changed Date: 2018-02-01 03:59:49 -0400 (Thu, 01 Feb 2018)
malbec1 Linux (Ubuntu 16.04.1 LTS) / x86_64  OK  OK  ERROR 
tokay1 Windows Server 2012 R2 Standard / x64 [ OK ] OK  ERROR  OK 
veracruz1 OS X 10.11.6 El Capitan / x86_64  OK  OK  ERROR  OK 

Summary

Package: GenomicFeatures
Version: 1.30.3
Command: rm -rf GenomicFeatures.buildbin-libdir && mkdir GenomicFeatures.buildbin-libdir && C:\cygwin\bin\curl.exe -O https://malbec1.bioconductor.org/BBS/3.6/bioc/src/contrib/GenomicFeatures_1.30.3.tar.gz && C:\Users\biocbuild\bbs-3.6-bioc\R\bin\R.exe CMD INSTALL --build --library=GenomicFeatures.buildbin-libdir --merge-multiarch GenomicFeatures_1.30.3.tar.gz && C:\Users\biocbuild\bbs-3.6-bioc\R\bin\R.exe CMD INSTALL GenomicFeatures_1.30.3.zip && rm GenomicFeatures_1.30.3.tar.gz GenomicFeatures_1.30.3.zip
StartedAt: 2018-04-11 18:47:24 -0400 (Wed, 11 Apr 2018)
EndedAt: 2018-04-11 18:49:13 -0400 (Wed, 11 Apr 2018)
EllapsedTime: 108.8 seconds
RetCode: 0
Status:  OK  

Command output

##############################################################################
##############################################################################
###
### Running command:
###
###   rm -rf GenomicFeatures.buildbin-libdir && mkdir GenomicFeatures.buildbin-libdir  && C:\cygwin\bin\curl.exe -O https://malbec1.bioconductor.org/BBS/3.6/bioc/src/contrib/GenomicFeatures_1.30.3.tar.gz && C:\Users\biocbuild\bbs-3.6-bioc\R\bin\R.exe CMD INSTALL --build --library=GenomicFeatures.buildbin-libdir --merge-multiarch GenomicFeatures_1.30.3.tar.gz && C:\Users\biocbuild\bbs-3.6-bioc\R\bin\R.exe CMD INSTALL GenomicFeatures_1.30.3.zip  && rm GenomicFeatures_1.30.3.tar.gz GenomicFeatures_1.30.3.zip
###
##############################################################################
##############################################################################


  % Total    % Received % Xferd  Average Speed   Time    Time     Time  Current
                                 Dload  Upload   Total   Spent    Left  Speed

  0     0    0     0    0     0      0      0 --:--:-- --:--:-- --:--:--     0
100  666k  100  666k    0     0  16.9M      0 --:--:-- --:--:-- --:--:-- 18.6M

install for i386

* installing *source* package 'GenomicFeatures' ...
** R
** inst
** preparing package for lazy loading
** help
*** installing help indices
  converting help for package 'GenomicFeatures'
    finding HTML links ... done
    DEFAULT_CIRC_SEQS                       html  
    FeatureDb-class                         html  
    finding level-2 HTML links ... done

    TxDb-class                              html  
Rd warning: C:/Users/biocbuild/bbs-3.6-bioc/tmpdir/RtmpKqwndm/R.INSTALL11a4581b72b2/GenomicFeatures/man/TxDb-class.Rd:97: missing file link 'GRanges'
Rd warning: C:/Users/biocbuild/bbs-3.6-bioc/tmpdir/RtmpKqwndm/R.INSTALL11a4581b72b2/GenomicFeatures/man/TxDb-class.Rd:100: missing file link 'saveDb'
Rd warning: C:/Users/biocbuild/bbs-3.6-bioc/tmpdir/RtmpKqwndm/R.INSTALL11a4581b72b2/GenomicFeatures/man/TxDb-class.Rd:101: missing file link 'loadDb'
    as-format-methods                       html  
    coordinate-mapping-methods              html  
Rd warning: C:/Users/biocbuild/bbs-3.6-bioc/tmpdir/RtmpKqwndm/R.INSTALL11a4581b72b2/GenomicFeatures/man/coordinate-mapping-methods.Rd:28: missing file link 'mapToAlignments'
Rd warning: C:/Users/biocbuild/bbs-3.6-bioc/tmpdir/RtmpKqwndm/R.INSTALL11a4581b72b2/GenomicFeatures/man/coordinate-mapping-methods.Rd:225: missing file link 'mapToAlignments'
    coverageByTranscript                    html  
Rd warning: C:/Users/biocbuild/bbs-3.6-bioc/tmpdir/RtmpKqwndm/R.INSTALL11a4581b72b2/GenomicFeatures/man/coverageByTranscript.Rd:25: missing file link 'GRanges'
Rd warning: C:/Users/biocbuild/bbs-3.6-bioc/tmpdir/RtmpKqwndm/R.INSTALL11a4581b72b2/GenomicFeatures/man/coverageByTranscript.Rd:25: missing file link 'GRangesList'
Rd warning: C:/Users/biocbuild/bbs-3.6-bioc/tmpdir/RtmpKqwndm/R.INSTALL11a4581b72b2/GenomicFeatures/man/coverageByTranscript.Rd:26: missing file link 'GAlignments'
Rd warning: C:/Users/biocbuild/bbs-3.6-bioc/tmpdir/RtmpKqwndm/R.INSTALL11a4581b72b2/GenomicFeatures/man/coverageByTranscript.Rd:27: missing file link 'GAlignmentPairs'
Rd warning: C:/Users/biocbuild/bbs-3.6-bioc/tmpdir/RtmpKqwndm/R.INSTALL11a4581b72b2/GenomicFeatures/man/coverageByTranscript.Rd:28: missing file link 'GAlignmentsList'
Rd warning: C:/Users/biocbuild/bbs-3.6-bioc/tmpdir/RtmpKqwndm/R.INSTALL11a4581b72b2/GenomicFeatures/man/coverageByTranscript.Rd:32: missing file link 'coverage'
Rd warning: C:/Users/biocbuild/bbs-3.6-bioc/tmpdir/RtmpKqwndm/R.INSTALL11a4581b72b2/GenomicFeatures/man/coverageByTranscript.Rd:33: missing file link 'BamFile'
Rd warning: C:/Users/biocbuild/bbs-3.6-bioc/tmpdir/RtmpKqwndm/R.INSTALL11a4581b72b2/GenomicFeatures/man/coverageByTranscript.Rd:35: missing file link 'RleList'
Rd warning: C:/Users/biocbuild/bbs-3.6-bioc/tmpdir/RtmpKqwndm/R.INSTALL11a4581b72b2/GenomicFeatures/man/coverageByTranscript.Rd:38: missing file link 'grglist'
Rd warning: C:/Users/biocbuild/bbs-3.6-bioc/tmpdir/RtmpKqwndm/R.INSTALL11a4581b72b2/GenomicFeatures/man/coverageByTranscript.Rd:43: missing file link 'GRangesList'
Rd warning: C:/Users/biocbuild/bbs-3.6-bioc/tmpdir/RtmpKqwndm/R.INSTALL11a4581b72b2/GenomicFeatures/man/coverageByTranscript.Rd:55: missing file link 'GRangesList'
Rd warning: C:/Users/biocbuild/bbs-3.6-bioc/tmpdir/RtmpKqwndm/R.INSTALL11a4581b72b2/GenomicFeatures/man/coverageByTranscript.Rd:70: missing file link 'grglist'
Rd warning: C:/Users/biocbuild/bbs-3.6-bioc/tmpdir/RtmpKqwndm/R.INSTALL11a4581b72b2/GenomicFeatures/man/coverageByTranscript.Rd:71: missing file link 'GRanges'
Rd warning: C:/Users/biocbuild/bbs-3.6-bioc/tmpdir/RtmpKqwndm/R.INSTALL11a4581b72b2/GenomicFeatures/man/coverageByTranscript.Rd:72: missing file link 'GRangesList'
Rd warning: C:/Users/biocbuild/bbs-3.6-bioc/tmpdir/RtmpKqwndm/R.INSTALL11a4581b72b2/GenomicFeatures/man/coverageByTranscript.Rd:74: missing file link 'GRangesList'
Rd warning: C:/Users/biocbuild/bbs-3.6-bioc/tmpdir/RtmpKqwndm/R.INSTALL11a4581b72b2/GenomicFeatures/man/coverageByTranscript.Rd:75: missing file link 'grglist'
Rd warning: C:/Users/biocbuild/bbs-3.6-bioc/tmpdir/RtmpKqwndm/R.INSTALL11a4581b72b2/GenomicFeatures/man/coverageByTranscript.Rd:80: missing file link 'RleList'
Rd warning: C:/Users/biocbuild/bbs-3.6-bioc/tmpdir/RtmpKqwndm/R.INSTALL11a4581b72b2/GenomicFeatures/man/coverageByTranscript.Rd:81: missing file link 'Rle'
Rd warning: C:/Users/biocbuild/bbs-3.6-bioc/tmpdir/RtmpKqwndm/R.INSTALL11a4581b72b2/GenomicFeatures/man/coverageByTranscript.Rd:102: missing file link 'RleList'
Rd warning: C:/Users/biocbuild/bbs-3.6-bioc/tmpdir/RtmpKqwndm/R.INSTALL11a4581b72b2/GenomicFeatures/man/coverageByTranscript.Rd:105: missing file link 'GRangesList'
Rd warning: C:/Users/biocbuild/bbs-3.6-bioc/tmpdir/RtmpKqwndm/R.INSTALL11a4581b72b2/GenomicFeatures/man/coverageByTranscript.Rd:108: missing file link 'coverage'
Rd warning: C:/Users/biocbuild/bbs-3.6-bioc/tmpdir/RtmpKqwndm/R.INSTALL11a4581b72b2/GenomicFeatures/man/coverageByTranscript.Rd:114: missing file link 'findCompatibleOverlaps'
    disjointExons                           html  
Rd warning: C:/Users/biocbuild/bbs-3.6-bioc/tmpdir/RtmpKqwndm/R.INSTALL11a4581b72b2/GenomicFeatures/man/disjointExons.Rd:47: missing file link 'GRanges'
Rd warning: C:/Users/biocbuild/bbs-3.6-bioc/tmpdir/RtmpKqwndm/R.INSTALL11a4581b72b2/GenomicFeatures/man/disjointExons.Rd:58: missing file link 'GRanges'
    exonicParts                             html  
Rd warning: C:/Users/biocbuild/bbs-3.6-bioc/tmpdir/RtmpKqwndm/R.INSTALL11a4581b72b2/GenomicFeatures/man/exonicParts.Rd:30: missing file link 'disjoin'
Rd warning: C:/Users/biocbuild/bbs-3.6-bioc/tmpdir/RtmpKqwndm/R.INSTALL11a4581b72b2/GenomicFeatures/man/exonicParts.Rd:36: missing file link 'disjoin'
Rd warning: C:/Users/biocbuild/bbs-3.6-bioc/tmpdir/RtmpKqwndm/R.INSTALL11a4581b72b2/GenomicFeatures/man/exonicParts.Rd:47: missing file link 'GRanges'
Rd warning: C:/Users/biocbuild/bbs-3.6-bioc/tmpdir/RtmpKqwndm/R.INSTALL11a4581b72b2/GenomicFeatures/man/exonicParts.Rd:52: missing file link 'GRanges'
Rd warning: C:/Users/biocbuild/bbs-3.6-bioc/tmpdir/RtmpKqwndm/R.INSTALL11a4581b72b2/GenomicFeatures/man/exonicParts.Rd:85: missing file link 'disjoin'
    extractTranscriptSeqs                   html  
Rd warning: C:/Users/biocbuild/bbs-3.6-bioc/tmpdir/RtmpKqwndm/R.INSTALL11a4581b72b2/GenomicFeatures/man/extractTranscriptSeqs.Rd:26: missing file link 'DNAString'
Rd warning: C:/Users/biocbuild/bbs-3.6-bioc/tmpdir/RtmpKqwndm/R.INSTALL11a4581b72b2/GenomicFeatures/man/extractTranscriptSeqs.Rd:27: missing file link 'BSgenome'
Rd warning: C:/Users/biocbuild/bbs-3.6-bioc/tmpdir/RtmpKqwndm/R.INSTALL11a4581b72b2/GenomicFeatures/man/extractTranscriptSeqs.Rd:31: missing file link 'FaFile'
Rd warning: C:/Users/biocbuild/bbs-3.6-bioc/tmpdir/RtmpKqwndm/R.INSTALL11a4581b72b2/GenomicFeatures/man/extractTranscriptSeqs.Rd:40: missing file link 'DNAString'
Rd warning: C:/Users/biocbuild/bbs-3.6-bioc/tmpdir/RtmpKqwndm/R.INSTALL11a4581b72b2/GenomicFeatures/man/extractTranscriptSeqs.Rd:41: missing file link 'RangesList'
Rd warning: C:/Users/biocbuild/bbs-3.6-bioc/tmpdir/RtmpKqwndm/R.INSTALL11a4581b72b2/GenomicFeatures/man/extractTranscriptSeqs.Rd:43: missing file link 'BSgenome'
Rd warning: C:/Users/biocbuild/bbs-3.6-bioc/tmpdir/RtmpKqwndm/R.INSTALL11a4581b72b2/GenomicFeatures/man/extractTranscriptSeqs.Rd:45: missing file link 'GRangesList'
Rd warning: C:/Users/biocbuild/bbs-3.6-bioc/tmpdir/RtmpKqwndm/R.INSTALL11a4581b72b2/GenomicFeatures/man/extractTranscriptSeqs.Rd:48: missing file link 'GRangesList'
Rd warning: C:/Users/biocbuild/bbs-3.6-bioc/tmpdir/RtmpKqwndm/R.INSTALL11a4581b72b2/GenomicFeatures/man/extractTranscriptSeqs.Rd:73: missing file link 'GRangesList'
Rd warning: C:/Users/biocbuild/bbs-3.6-bioc/tmpdir/RtmpKqwndm/R.INSTALL11a4581b72b2/GenomicFeatures/man/extractTranscriptSeqs.Rd:78: missing file link 'DNAString'
Rd warning: C:/Users/biocbuild/bbs-3.6-bioc/tmpdir/RtmpKqwndm/R.INSTALL11a4581b72b2/GenomicFeatures/man/extractTranscriptSeqs.Rd:80: missing file link 'Rle'
Rd warning: C:/Users/biocbuild/bbs-3.6-bioc/tmpdir/RtmpKqwndm/R.INSTALL11a4581b72b2/GenomicFeatures/man/extractTranscriptSeqs.Rd:83: missing file link 'Rle'
Rd warning: C:/Users/biocbuild/bbs-3.6-bioc/tmpdir/RtmpKqwndm/R.INSTALL11a4581b72b2/GenomicFeatures/man/extractTranscriptSeqs.Rd:86: missing file link 'RangesList'
Rd warning: C:/Users/biocbuild/bbs-3.6-bioc/tmpdir/RtmpKqwndm/R.INSTALL11a4581b72b2/GenomicFeatures/man/extractTranscriptSeqs.Rd:92: missing file link 'RangesList'
Rd warning: C:/Users/biocbuild/bbs-3.6-bioc/tmpdir/RtmpKqwndm/R.INSTALL11a4581b72b2/GenomicFeatures/man/extractTranscriptSeqs.Rd:102: missing file link 'DNAStringSet'
Rd warning: C:/Users/biocbuild/bbs-3.6-bioc/tmpdir/RtmpKqwndm/R.INSTALL11a4581b72b2/GenomicFeatures/man/extractTranscriptSeqs.Rd:124: missing file link 'DNAString'
Rd warning: C:/Users/biocbuild/bbs-3.6-bioc/tmpdir/RtmpKqwndm/R.INSTALL11a4581b72b2/GenomicFeatures/man/extractTranscriptSeqs.Rd:124: missing file link 'DNAStringSet'
Rd warning: C:/Users/biocbuild/bbs-3.6-bioc/tmpdir/RtmpKqwndm/R.INSTALL11a4581b72b2/GenomicFeatures/man/extractTranscriptSeqs.Rd:131: missing file link 'GRangesList'
Rd warning: C:/Users/biocbuild/bbs-3.6-bioc/tmpdir/RtmpKqwndm/R.INSTALL11a4581b72b2/GenomicFeatures/man/extractTranscriptSeqs.Rd:134: missing file link 'RangesList'
    extractUpstreamSeqs                     html  
Rd warning: C:/Users/biocbuild/bbs-3.6-bioc/tmpdir/RtmpKqwndm/R.INSTALL11a4581b72b2/GenomicFeatures/man/extractUpstreamSeqs.Rd:29: missing file link 'BSgenome'
Rd warning: C:/Users/biocbuild/bbs-3.6-bioc/tmpdir/RtmpKqwndm/R.INSTALL11a4581b72b2/GenomicFeatures/man/extractUpstreamSeqs.Rd:30: missing file link 'TwoBitFile'
Rd warning: C:/Users/biocbuild/bbs-3.6-bioc/tmpdir/RtmpKqwndm/R.INSTALL11a4581b72b2/GenomicFeatures/man/extractUpstreamSeqs.Rd:30: missing file link 'FaFile'
Rd warning: C:/Users/biocbuild/bbs-3.6-bioc/tmpdir/RtmpKqwndm/R.INSTALL11a4581b72b2/GenomicFeatures/man/extractUpstreamSeqs.Rd:39: missing file link 'GenomicRanges'
Rd warning: C:/Users/biocbuild/bbs-3.6-bioc/tmpdir/RtmpKqwndm/R.INSTALL11a4581b72b2/GenomicFeatures/man/extractUpstreamSeqs.Rd:57: missing file link 'DNAStringSet'
Rd warning: C:/Users/biocbuild/bbs-3.6-bioc/tmpdir/RtmpKqwndm/R.INSTALL11a4581b72b2/GenomicFeatures/man/extractUpstreamSeqs.Rd:59: missing file link 'GenomicRanges'
Rd warning: C:/Users/biocbuild/bbs-3.6-bioc/tmpdir/RtmpKqwndm/R.INSTALL11a4581b72b2/GenomicFeatures/man/extractUpstreamSeqs.Rd:61: missing file link 'GenomicRanges'
Rd warning: C:/Users/biocbuild/bbs-3.6-bioc/tmpdir/RtmpKqwndm/R.INSTALL11a4581b72b2/GenomicFeatures/man/extractUpstreamSeqs.Rd:65: missing file link 'GenomicRanges'
Rd warning: C:/Users/biocbuild/bbs-3.6-bioc/tmpdir/RtmpKqwndm/R.INSTALL11a4581b72b2/GenomicFeatures/man/extractUpstreamSeqs.Rd:109: missing file link 'GRanges'
Rd warning: C:/Users/biocbuild/bbs-3.6-bioc/tmpdir/RtmpKqwndm/R.INSTALL11a4581b72b2/GenomicFeatures/man/extractUpstreamSeqs.Rd:116: missing file link 'BSgenome'
Rd warning: C:/Users/biocbuild/bbs-3.6-bioc/tmpdir/RtmpKqwndm/R.INSTALL11a4581b72b2/GenomicFeatures/man/extractUpstreamSeqs.Rd:116: missing file link 'TwoBitFile'
Rd warning: C:/Users/biocbuild/bbs-3.6-bioc/tmpdir/RtmpKqwndm/R.INSTALL11a4581b72b2/GenomicFeatures/man/extractUpstreamSeqs.Rd:117: missing file link 'FaFile'
Rd warning: C:/Users/biocbuild/bbs-3.6-bioc/tmpdir/RtmpKqwndm/R.INSTALL11a4581b72b2/GenomicFeatures/man/extractUpstreamSeqs.Rd:126: missing file link 'GenomicRanges'
Rd warning: C:/Users/biocbuild/bbs-3.6-bioc/tmpdir/RtmpKqwndm/R.INSTALL11a4581b72b2/GenomicFeatures/man/extractUpstreamSeqs.Rd:129: missing file link 'DNAStringSet'
    features                                html  
    getPromoterSeq-methods                  html  
Rd warning: C:/Users/biocbuild/bbs-3.6-bioc/tmpdir/RtmpKqwndm/R.INSTALL11a4581b72b2/GenomicFeatures/man/getPromoterSeq-methods.Rd:11: missing file link 'BSgenome'
Rd warning: C:/Users/biocbuild/bbs-3.6-bioc/tmpdir/RtmpKqwndm/R.INSTALL11a4581b72b2/GenomicFeatures/man/getPromoterSeq-methods.Rd:11: missing file link 'FaFile'
Rd warning: C:/Users/biocbuild/bbs-3.6-bioc/tmpdir/RtmpKqwndm/R.INSTALL11a4581b72b2/GenomicFeatures/man/getPromoterSeq-methods.Rd:21: missing file link 'GRanges'
Rd warning: C:/Users/biocbuild/bbs-3.6-bioc/tmpdir/RtmpKqwndm/R.INSTALL11a4581b72b2/GenomicFeatures/man/getPromoterSeq-methods.Rd:21: missing file link 'GRangesList'
Rd warning: C:/Users/biocbuild/bbs-3.6-bioc/tmpdir/RtmpKqwndm/R.INSTALL11a4581b72b2/GenomicFeatures/man/getPromoterSeq-methods.Rd:24: missing file link 'BSgenome'
Rd warning: C:/Users/biocbuild/bbs-3.6-bioc/tmpdir/RtmpKqwndm/R.INSTALL11a4581b72b2/GenomicFeatures/man/getPromoterSeq-methods.Rd:24: missing file link 'FaFile'
Rd warning: C:/Users/biocbuild/bbs-3.6-bioc/tmpdir/RtmpKqwndm/R.INSTALL11a4581b72b2/GenomicFeatures/man/getPromoterSeq-methods.Rd:36: missing file link 'BSgenome'
Rd warning: C:/Users/biocbuild/bbs-3.6-bioc/tmpdir/RtmpKqwndm/R.INSTALL11a4581b72b2/GenomicFeatures/man/getPromoterSeq-methods.Rd:36: missing file link 'FaFile'
Rd warning: C:/Users/biocbuild/bbs-3.6-bioc/tmpdir/RtmpKqwndm/R.INSTALL11a4581b72b2/GenomicFeatures/man/getPromoterSeq-methods.Rd:45: missing file link 'DNAStringSet'
Rd warning: C:/Users/biocbuild/bbs-3.6-bioc/tmpdir/RtmpKqwndm/R.INSTALL11a4581b72b2/GenomicFeatures/man/getPromoterSeq-methods.Rd:46: missing file link 'DNAStringSetList'
    id2name                                 html  
    makeFeatureDbFromUCSC                   html  
    makeTxDb                                html  
Rd warning: C:/Users/biocbuild/bbs-3.6-bioc/tmpdir/RtmpKqwndm/R.INSTALL11a4581b72b2/GenomicFeatures/man/makeTxDb.Rd:192: missing file link 'GRanges'
Rd warning: C:/Users/biocbuild/bbs-3.6-bioc/tmpdir/RtmpKqwndm/R.INSTALL11a4581b72b2/GenomicFeatures/man/makeTxDb.Rd:197: missing file link 'saveDb'
Rd warning: C:/Users/biocbuild/bbs-3.6-bioc/tmpdir/RtmpKqwndm/R.INSTALL11a4581b72b2/GenomicFeatures/man/makeTxDb.Rd:198: missing file link 'loadDb'
    makeTxDbFromBiomart                     html  
Rd warning: C:/Users/biocbuild/bbs-3.6-bioc/tmpdir/RtmpKqwndm/R.INSTALL11a4581b72b2/GenomicFeatures/man/makeTxDbFromBiomart.Rd:141: missing file link 'GRanges'
    makeTxDbFromEnsembl                     html  
Rd warning: C:/Users/biocbuild/bbs-3.6-bioc/tmpdir/RtmpKqwndm/R.INSTALL11a4581b72b2/GenomicFeatures/man/makeTxDbFromEnsembl.Rd:62: missing file link 'GRanges'
    makeTxDbFromGFF                         html  
Rd warning: C:/Users/biocbuild/bbs-3.6-bioc/tmpdir/RtmpKqwndm/R.INSTALL11a4581b72b2/GenomicFeatures/man/makeTxDbFromGFF.Rd:29: missing file link 'GFF3File'
Rd warning: C:/Users/biocbuild/bbs-3.6-bioc/tmpdir/RtmpKqwndm/R.INSTALL11a4581b72b2/GenomicFeatures/man/makeTxDbFromGFF.Rd:30: missing file link 'GTFFile'
Rd warning: C:/Users/biocbuild/bbs-3.6-bioc/tmpdir/RtmpKqwndm/R.INSTALL11a4581b72b2/GenomicFeatures/man/makeTxDbFromGFF.Rd:99: missing file link 'GRanges'
Rd warning: C:/Users/biocbuild/bbs-3.6-bioc/tmpdir/RtmpKqwndm/R.INSTALL11a4581b72b2/GenomicFeatures/man/makeTxDbFromGFF.Rd:101: missing file link 'import'
    makeTxDbFromGRanges                     html  
Rd warning: C:/Users/biocbuild/bbs-3.6-bioc/tmpdir/RtmpKqwndm/R.INSTALL11a4581b72b2/GenomicFeatures/man/makeTxDbFromGRanges.Rd:10: missing file link 'GRanges'
Rd warning: C:/Users/biocbuild/bbs-3.6-bioc/tmpdir/RtmpKqwndm/R.INSTALL11a4581b72b2/GenomicFeatures/man/makeTxDbFromGRanges.Rd:20: missing file link 'GRanges'
Rd warning: C:/Users/biocbuild/bbs-3.6-bioc/tmpdir/RtmpKqwndm/R.INSTALL11a4581b72b2/GenomicFeatures/man/makeTxDbFromGRanges.Rd:21: missing file link 'import'
Rd warning: C:/Users/biocbuild/bbs-3.6-bioc/tmpdir/RtmpKqwndm/R.INSTALL11a4581b72b2/GenomicFeatures/man/makeTxDbFromGRanges.Rd:57: missing file link 'import'
Rd warning: C:/Users/biocbuild/bbs-3.6-bioc/tmpdir/RtmpKqwndm/R.INSTALL11a4581b72b2/GenomicFeatures/man/makeTxDbFromGRanges.Rd:63: missing file link 'GRanges'
    makeTxDbFromUCSC                        html  
Rd warning: C:/Users/biocbuild/bbs-3.6-bioc/tmpdir/RtmpKqwndm/R.INSTALL11a4581b72b2/GenomicFeatures/man/makeTxDbFromUCSC.Rd:96: missing file link 'GRanges'
    makeTxDbPackage                         html  
    mapIdsToRanges                          html  
Rd warning: C:/Users/biocbuild/bbs-3.6-bioc/tmpdir/RtmpKqwndm/R.INSTALL11a4581b72b2/GenomicFeatures/man/mapIdsToRanges.Rd:24: missing file link 'GRangesList'
    mapRangesToIds                          html  
Rd warning: C:/Users/biocbuild/bbs-3.6-bioc/tmpdir/RtmpKqwndm/R.INSTALL11a4581b72b2/GenomicFeatures/man/mapRangesToIds.Rd:25: missing file link 'DataFrame'
    microRNAs                               html  
Rd warning: C:/Users/biocbuild/bbs-3.6-bioc/tmpdir/RtmpKqwndm/R.INSTALL11a4581b72b2/GenomicFeatures/man/microRNAs.Rd:32: missing file link 'GRanges'
    nearest-methods                         html  
    select-methods                          html  
    transcriptLengths                       html  
Rd warning: C:/Users/biocbuild/bbs-3.6-bioc/tmpdir/RtmpKqwndm/R.INSTALL11a4581b72b2/GenomicFeatures/man/transcriptLengths.Rd:44: missing file link 'GRanges'
Rd warning: C:/Users/biocbuild/bbs-3.6-bioc/tmpdir/RtmpKqwndm/R.INSTALL11a4581b72b2/GenomicFeatures/man/transcriptLengths.Rd:107: missing file link 'GRanges'
    transcriptLocs2refLocs                  html  
Rd warning: C:/Users/biocbuild/bbs-3.6-bioc/tmpdir/RtmpKqwndm/R.INSTALL11a4581b72b2/GenomicFeatures/man/transcriptLocs2refLocs.Rd:36: missing file link 'IntegerList'
    transcripts                             html  
Rd warning: C:/Users/biocbuild/bbs-3.6-bioc/tmpdir/RtmpKqwndm/R.INSTALL11a4581b72b2/GenomicFeatures/man/transcripts.Rd:80: missing file link 'GRanges'
Rd warning: C:/Users/biocbuild/bbs-3.6-bioc/tmpdir/RtmpKqwndm/R.INSTALL11a4581b72b2/GenomicFeatures/man/transcripts.Rd:81: missing file link 'GRangesList'
Rd warning: C:/Users/biocbuild/bbs-3.6-bioc/tmpdir/RtmpKqwndm/R.INSTALL11a4581b72b2/GenomicFeatures/man/transcripts.Rd:84: missing file link 'GRangesList'
Rd warning: C:/Users/biocbuild/bbs-3.6-bioc/tmpdir/RtmpKqwndm/R.INSTALL11a4581b72b2/GenomicFeatures/man/transcripts.Rd:117: missing file link 'GRanges'
Rd warning: C:/Users/biocbuild/bbs-3.6-bioc/tmpdir/RtmpKqwndm/R.INSTALL11a4581b72b2/GenomicFeatures/man/transcripts.Rd:119: missing file link 'GRangesList'
    transcriptsBy                           html  
Rd warning: C:/Users/biocbuild/bbs-3.6-bioc/tmpdir/RtmpKqwndm/R.INSTALL11a4581b72b2/GenomicFeatures/man/transcriptsBy.Rd:49: missing file link 'GRangesList'
Rd warning: C:/Users/biocbuild/bbs-3.6-bioc/tmpdir/RtmpKqwndm/R.INSTALL11a4581b72b2/GenomicFeatures/man/transcriptsBy.Rd:52: missing file link 'GRangesList'
Rd warning: C:/Users/biocbuild/bbs-3.6-bioc/tmpdir/RtmpKqwndm/R.INSTALL11a4581b72b2/GenomicFeatures/man/transcriptsBy.Rd:54: missing file link 'GRangesList'
Rd warning: C:/Users/biocbuild/bbs-3.6-bioc/tmpdir/RtmpKqwndm/R.INSTALL11a4581b72b2/GenomicFeatures/man/transcriptsBy.Rd:79: missing file link 'GRangesList'
Rd warning: C:/Users/biocbuild/bbs-3.6-bioc/tmpdir/RtmpKqwndm/R.INSTALL11a4581b72b2/GenomicFeatures/man/transcriptsBy.Rd:89: missing file link 'GRangesList'
    transcriptsByOverlaps                   html  
Rd warning: C:/Users/biocbuild/bbs-3.6-bioc/tmpdir/RtmpKqwndm/R.INSTALL11a4581b72b2/GenomicFeatures/man/transcriptsByOverlaps.Rd:46: missing file link 'GRanges'
Rd warning: C:/Users/biocbuild/bbs-3.6-bioc/tmpdir/RtmpKqwndm/R.INSTALL11a4581b72b2/GenomicFeatures/man/transcriptsByOverlaps.Rd:49: missing file link 'findOverlaps'
Rd warning: C:/Users/biocbuild/bbs-3.6-bioc/tmpdir/RtmpKqwndm/R.INSTALL11a4581b72b2/GenomicFeatures/man/transcriptsByOverlaps.Rd:59: missing file link 'findOverlaps'
** building package indices
** installing vignettes
** testing if installed package can be loaded
In R CMD INSTALL

install for x64

* installing *source* package 'GenomicFeatures' ...
** testing if installed package can be loaded
* MD5 sums
packaged installation of 'GenomicFeatures' as GenomicFeatures_1.30.3.zip
* DONE (GenomicFeatures)
In R CMD INSTALL
In R CMD INSTALL
* installing to library 'C:/Users/biocbuild/bbs-3.6-bioc/R/library'
package 'GenomicFeatures' successfully unpacked and MD5 sums checked
In R CMD INSTALL