Package: EnrichmentBrowser

Version: 2.8.7

Command: rm -rf EnrichmentBrowser.buildbin-libdir EnrichmentBrowser.Rcheck && mkdir EnrichmentBrowser.buildbin-libdir EnrichmentBrowser.Rcheck && C:\Users\biocbuild\bbs-3.6-bioc\R\bin\R.exe CMD INSTALL --build --merge-multiarch --library=EnrichmentBrowser.buildbin-libdir EnrichmentBrowser_2.8.7.tar.gz >EnrichmentBrowser.Rcheck\00install.out 2>&1 && cp EnrichmentBrowser.Rcheck\00install.out EnrichmentBrowser-install.out && C:\Users\biocbuild\bbs-3.6-bioc\R\bin\R.exe CMD check --library=EnrichmentBrowser.buildbin-libdir --install="check:EnrichmentBrowser-install.out" --force-multiarch --no-vignettes --timings EnrichmentBrowser_2.8.7.tar.gz

StartedAt: 2018-04-11 23:47:21 -0400 (Wed, 11 Apr 2018)

EndedAt: 2018-04-11 23:57:52 -0400 (Wed, 11 Apr 2018)

EllapsedTime: 631.1 seconds

RetCode: 0

Status:  OK

CheckDir: EnrichmentBrowser.Rcheck

Warnings: 0

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### Running command:
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###   rm -rf EnrichmentBrowser.buildbin-libdir EnrichmentBrowser.Rcheck && mkdir EnrichmentBrowser.buildbin-libdir EnrichmentBrowser.Rcheck && C:\Users\biocbuild\bbs-3.6-bioc\R\bin\R.exe CMD INSTALL --build --merge-multiarch --library=EnrichmentBrowser.buildbin-libdir EnrichmentBrowser_2.8.7.tar.gz >EnrichmentBrowser.Rcheck\00install.out 2>&1 && cp EnrichmentBrowser.Rcheck\00install.out EnrichmentBrowser-install.out  &&  C:\Users\biocbuild\bbs-3.6-bioc\R\bin\R.exe CMD check --library=EnrichmentBrowser.buildbin-libdir --install="check:EnrichmentBrowser-install.out" --force-multiarch --no-vignettes --timings EnrichmentBrowser_2.8.7.tar.gz
###
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* using log directory 'C:/Users/biocbuild/bbs-3.6-bioc/meat/EnrichmentBrowser.Rcheck'
* using R version 3.4.4 (2018-03-15)
* using platform: x86_64-w64-mingw32 (64-bit)
* using session charset: ISO8859-1
* using option '--no-vignettes'
* checking for file 'EnrichmentBrowser/DESCRIPTION' ... OK
* this is package 'EnrichmentBrowser' version '2.8.7'
* checking package namespace information ... OK
* checking package dependencies ... OK
* checking if this is a source package ... OK
* checking if there is a namespace ... OK
* checking for hidden files and directories ... OK
* checking for portable file names ... OK
* checking whether package 'EnrichmentBrowser' can be installed ... OK
* checking installed package size ... OK
* checking package directory ... OK
* checking 'build' directory ... OK
* checking DESCRIPTION meta-information ... OK
* checking top-level files ... OK
* checking for left-over files ... OK
* checking index information ... OK
* checking package subdirectories ... OK
* checking R files for non-ASCII characters ... OK
* checking R files for syntax errors ... OK
* loading checks for arch 'i386'
** checking whether the package can be loaded ... OK
** checking whether the package can be loaded with stated dependencies ... OK
** checking whether the package can be unloaded cleanly ... OK
** checking whether the namespace can be loaded with stated dependencies ... OK
** checking whether the namespace can be unloaded cleanly ... OK
** checking loading without being on the library search path ... OK
* loading checks for arch 'x64'
** checking whether the package can be loaded ... OK
** checking whether the package can be loaded with stated dependencies ... OK
** checking whether the package can be unloaded cleanly ... OK
** checking whether the namespace can be loaded with stated dependencies ... OK
** checking whether the namespace can be unloaded cleanly ... OK
** checking loading without being on the library search path ... OK
* checking dependencies in R code ... NOTE
Unexported object imported by a ':::' call: 'pathview:::parseKGML2Graph2'
  See the note in ?`:::` about the use of this operator.
* checking S3 generic/method consistency ... OK
* checking replacement functions ... OK
* checking foreign function calls ... OK
* checking R code for possible problems ... OK
* checking Rd files ... OK
* checking Rd metadata ... OK
* checking Rd cross-references ... OK
* checking for missing documentation entries ... OK
* checking for code/documentation mismatches ... OK
* checking Rd \usage sections ... OK
* checking Rd contents ... OK
* checking for unstated dependencies in examples ... OK
* checking installed files from 'inst/doc' ... OK
* checking files in 'vignettes' ... OK
* checking examples ...
** running examples for arch 'i386' ... OK
Examples with CPU or elapsed time > 5s
                 user system elapsed
ebrowser        37.02   1.87   42.22
get.go.genesets 13.62   0.21   13.82
** running examples for arch 'x64' ... OK
Examples with CPU or elapsed time > 5s
                       user system elapsed
ebrowser              37.27   1.38   38.64
get.go.genesets       18.06   0.14   18.22
compile.grn.from.kegg  5.20   0.02    5.22
* checking for unstated dependencies in vignettes ... OK
* checking package vignettes in 'inst/doc' ... OK
* checking running R code from vignettes ... SKIPPED
* checking re-building of vignette outputs ... SKIPPED
* checking PDF version of manual ... OK
* DONE

Status: 1 NOTE
See
  'C:/Users/biocbuild/bbs-3.6-bioc/meat/EnrichmentBrowser.Rcheck/00check.log'
for details.

install for i386

* installing *source* package 'EnrichmentBrowser' ...
** R
** inst
** preparing package for lazy loading
** help
*** installing help indices
  converting help for package 'EnrichmentBrowser'
    finding HTML links ... done
    comb.ea.results                         html  
    compile.grn.from.kegg                   html  
    finding level-2 HTML links ... done

    config.ebrowser                         html  
    de.ana                                  html  
    download.kegg.pathways                  html  
    ea.browse                               html  
    ebrowser                                html  
    get.go.genesets                         html  
    get.kegg.genesets                       html  
    ggea.graph                              html  
    isAvailable                             html  
    make.example.data                       html  
    map.ids                                 html  
    nbea                                    html  
    normalize                               html  
    parseGMT                                html  
    plots                                   html  
    probe.2.gene.eset                       html  
    read.eset                               html  
    sbea                                    html  
** building package indices
** installing vignettes
** testing if installed package can be loaded
In R CMD INSTALL

install for x64

* installing *source* package 'EnrichmentBrowser' ...
** testing if installed package can be loaded
* MD5 sums
packaged installation of 'EnrichmentBrowser' as EnrichmentBrowser_2.8.7.zip
* DONE (EnrichmentBrowser)
In R CMD INSTALL
In R CMD INSTALL