Zuguang Gu
| Snapshot Date: 2018-04-11 16:45:18 -0400 (Wed, 11 Apr 2018) |
| URL: https://git.bioconductor.org/packages/EnrichedHeatmap |
| Branch: RELEASE_3_6 |
| Last Commit: bc9fb1f |
| Last Changed Date: 2018-04-10 08:14:10 -0400 (Tue, 10 Apr 2018) |
| Back to Multiple platform build/check report for BioC 3.6 |
|
This page was generated on 2018-04-12 13:14:04 -0400 (Thu, 12 Apr 2018).
| Package 422/1472 | Hostname | OS / Arch | INSTALL | BUILD | CHECK | BUILD BIN | ||||||
| EnrichedHeatmap 1.9.4 Zuguang Gu
| malbec1 | Linux (Ubuntu 16.04.1 LTS) / x86_64 | NotNeeded | OK | [ OK ] | | ||||||
| tokay1 | Windows Server 2012 R2 Standard / x64 | NotNeeded | OK | WARNINGS | OK | | ||||||
| veracruz1 | OS X 10.11.6 El Capitan / x86_64 | NotNeeded | OK | OK | OK | |
| Package: EnrichedHeatmap |
| Version: 1.9.4 |
| Command: /home/biocbuild/bbs-3.6-bioc/R/bin/R CMD check --no-vignettes --timings EnrichedHeatmap_1.9.4.tar.gz |
| StartedAt: 2018-04-11 23:12:16 -0400 (Wed, 11 Apr 2018) |
| EndedAt: 2018-04-11 23:14:07 -0400 (Wed, 11 Apr 2018) |
| EllapsedTime: 110.8 seconds |
| RetCode: 0 |
| Status: OK |
| CheckDir: EnrichedHeatmap.Rcheck |
| Warnings: 0 |
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###
### Running command:
###
### /home/biocbuild/bbs-3.6-bioc/R/bin/R CMD check --no-vignettes --timings EnrichedHeatmap_1.9.4.tar.gz
###
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* using log directory ‘/home/biocbuild/bbs-3.6-bioc/meat/EnrichedHeatmap.Rcheck’
* using R version 3.4.4 (2018-03-15)
* using platform: x86_64-pc-linux-gnu (64-bit)
* using session charset: UTF-8
* using option ‘--no-vignettes’
* checking for file ‘EnrichedHeatmap/DESCRIPTION’ ... OK
* checking extension type ... Package
* this is package ‘EnrichedHeatmap’ version ‘1.9.4’
* checking package namespace information ... OK
* checking package dependencies ... OK
* checking if this is a source package ... OK
* checking if there is a namespace ... OK
* checking for hidden files and directories ... OK
* checking for portable file names ... OK
* checking for sufficient/correct file permissions ... OK
* checking whether package ‘EnrichedHeatmap’ can be installed ... OK
* checking installed package size ... NOTE
installed size is 11.2Mb
sub-directories of 1Mb or more:
doc 7.7Mb
extdata 2.6Mb
* checking package directory ... OK
* checking ‘build’ directory ... OK
* checking DESCRIPTION meta-information ... NOTE
License components which are templates and need '+ file LICENSE':
MIT
* checking top-level files ... OK
* checking for left-over files ... OK
* checking index information ... OK
* checking package subdirectories ... OK
* checking R files for non-ASCII characters ... OK
* checking R files for syntax errors ... OK
* checking whether the package can be loaded ... OK
* checking whether the package can be loaded with stated dependencies ... OK
* checking whether the package can be unloaded cleanly ... OK
* checking whether the namespace can be loaded with stated dependencies ... OK
* checking whether the namespace can be unloaded cleanly ... OK
* checking loading without being on the library search path ... OK
* checking dependencies in R code ... OK
* checking S3 generic/method consistency ... OK
* checking replacement functions ... OK
* checking foreign function calls ... OK
* checking R code for possible problems ... OK
* checking Rd files ... OK
* checking Rd metadata ... OK
* checking Rd cross-references ... OK
* checking for missing documentation entries ... OK
* checking for code/documentation mismatches ... OK
* checking Rd \usage sections ... OK
* checking Rd contents ... OK
* checking for unstated dependencies in examples ... OK
* checking line endings in C/C++/Fortran sources/headers ... OK
* checking compiled code ... OK
* checking installed files from ‘inst/doc’ ... OK
* checking files in ‘vignettes’ ... OK
* checking examples ... OK
Examples with CPU or elapsed time > 5s
user system elapsed
EnrichedHeatmap 12.324 0.076 12.41
* checking for unstated dependencies in ‘tests’ ... OK
* checking tests ...
Running ‘test-all.R’
OK
* checking for unstated dependencies in vignettes ... OK
* checking package vignettes in ‘inst/doc’ ... OK
* checking running R code from vignettes ... SKIPPED
* checking re-building of vignette outputs ... SKIPPED
* checking PDF version of manual ... OK
* DONE
Status: 2 NOTEs
See
‘/home/biocbuild/bbs-3.6-bioc/meat/EnrichedHeatmap.Rcheck/00check.log’
for details.
EnrichedHeatmap.Rcheck/00install.out
* installing *source* package ‘EnrichedHeatmap’ ...
** libs
g++ -I/home/biocbuild/bbs-3.6-bioc/R/include -DNDEBUG -I"/home/biocbuild/bbs-3.6-bioc/R/library/Rcpp/include" -I/usr/local/include -fpic -g -O2 -Wall -c RcppExports.cpp -o RcppExports.o
g++ -I/home/biocbuild/bbs-3.6-bioc/R/include -DNDEBUG -I"/home/biocbuild/bbs-3.6-bioc/R/library/Rcpp/include" -I/usr/local/include -fpic -g -O2 -Wall -c dist_by_closeness.cpp -o dist_by_closeness.o
dist_by_closeness.cpp: In function ‘float closeness(Rcpp::NumericVector, Rcpp::NumericVector)’:
dist_by_closeness.cpp:12:27: warning: suggest parentheses around comparison in operand of ‘|’ [-Wparentheses]
if(std::abs(x1[i] - 0) < 1e-6 | std::abs(x2[j] - 0) < 1e-6) {
^
g++ -shared -L/home/biocbuild/bbs-3.6-bioc/R/lib -L/usr/local/lib -o EnrichedHeatmap.so RcppExports.o dist_by_closeness.o -L/home/biocbuild/bbs-3.6-bioc/R/lib -lR
installing to /home/biocbuild/bbs-3.6-bioc/meat/EnrichedHeatmap.Rcheck/EnrichedHeatmap/libs
** R
** inst
** preparing package for lazy loading
** help
*** installing help indices
** building package indices
** installing vignettes
** testing if installed package can be loaded
* DONE (EnrichedHeatmap)
EnrichedHeatmap.Rcheck/tests/test-all.Rout
R version 3.4.4 (2018-03-15) -- "Someone to Lean On"
Copyright (C) 2018 The R Foundation for Statistical Computing
Platform: x86_64-pc-linux-gnu (64-bit)
R is free software and comes with ABSOLUTELY NO WARRANTY.
You are welcome to redistribute it under certain conditions.
Type 'license()' or 'licence()' for distribution details.
R is a collaborative project with many contributors.
Type 'contributors()' for more information and
'citation()' on how to cite R or R packages in publications.
Type 'demo()' for some demos, 'help()' for on-line help, or
'help.start()' for an HTML browser interface to help.
Type 'q()' to quit R.
> library(testthat)
> suppressWarnings(suppressPackageStartupMessages(library(EnrichedHeatmap)))
>
> test_check("EnrichedHeatmap")
══ testthat results ═══════════════════════════════════════════════════════════
OK: 25 SKIPPED: 0 FAILED: 0
>
> proc.time()
user system elapsed
8.988 0.068 9.055
EnrichedHeatmap.Rcheck/EnrichedHeatmap-Ex.timings
| name | user | system | elapsed | |
| EnrichedHeatmap-class | 0.004 | 0.000 | 0.000 | |
| EnrichedHeatmap | 12.324 | 0.076 | 12.410 | |
| EnrichedHeatmapList-class | 0 | 0 | 0 | |
| EnrichedHeatmapList | 0.004 | 0.000 | 0.000 | |
| Extract.normalizedMatrix | 0.000 | 0.000 | 0.001 | |
| add.AdditiveUnit | 0.000 | 0.000 | 0.001 | |
| anno_enriched | 4.228 | 0.024 | 4.256 | |
| copyAttr | 0.292 | 0.000 | 0.290 | |
| default_smooth_fun | 0.000 | 0.000 | 0.001 | |
| discretize | 0.000 | 0.000 | 0.001 | |
| dist_by_closeness | 0.004 | 0.000 | 0.003 | |
| draw-EnrichedHeatmap-method | 0.000 | 0.000 | 0.001 | |
| draw-EnrichedHeatmapList-method | 0.000 | 0.000 | 0.001 | |
| draw-dispatch | 0.000 | 0.000 | 0.001 | |
| enriched_score | 0.000 | 0.000 | 0.001 | |
| extract_anno_enriched | 0.000 | 0.000 | 0.001 | |
| getSignalsFromList | 0 | 0 | 0 | |
| makeWindows | 0.368 | 0.000 | 0.369 | |
| normalizeToMatrix | 2.432 | 0.000 | 2.436 | |
| print.normalizedMatrix | 0.000 | 0.000 | 0.001 | |
| rbind.normalizedMatrix | 0.000 | 0.000 | 0.001 | |
| show-EnrichedHeatmap-method | 0.000 | 0.000 | 0.001 | |
| show-EnrichedHeatmapList-method | 0 | 0 | 0 | |
| show-dispatch | 0 | 0 | 0 | |