Back to Multiple platform build/check report for BioC 3.6 |
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This page was generated on 2018-04-12 13:23:44 -0400 (Thu, 12 Apr 2018).
Package 416/1472 | Hostname | OS / Arch | INSTALL | BUILD | CHECK | BUILD BIN | ||||||
ELBOW 1.14.0 Graham Alvare
| malbec1 | Linux (Ubuntu 16.04.1 LTS) / x86_64 | NotNeeded | OK | OK | |||||||
tokay1 | Windows Server 2012 R2 Standard / x64 | NotNeeded | OK | [ OK ] | OK | |||||||
veracruz1 | OS X 10.11.6 El Capitan / x86_64 | NotNeeded | OK | OK | OK |
Package: ELBOW |
Version: 1.14.0 |
Command: rm -rf ELBOW.buildbin-libdir ELBOW.Rcheck && mkdir ELBOW.buildbin-libdir ELBOW.Rcheck && C:\Users\biocbuild\bbs-3.6-bioc\R\bin\R.exe CMD INSTALL --build --merge-multiarch --library=ELBOW.buildbin-libdir ELBOW_1.14.0.tar.gz >ELBOW.Rcheck\00install.out 2>&1 && cp ELBOW.Rcheck\00install.out ELBOW-install.out && C:\Users\biocbuild\bbs-3.6-bioc\R\bin\R.exe CMD check --library=ELBOW.buildbin-libdir --install="check:ELBOW-install.out" --force-multiarch --no-vignettes --timings ELBOW_1.14.0.tar.gz |
StartedAt: 2018-04-11 23:44:25 -0400 (Wed, 11 Apr 2018) |
EndedAt: 2018-04-11 23:45:15 -0400 (Wed, 11 Apr 2018) |
EllapsedTime: 49.6 seconds |
RetCode: 0 |
Status: OK |
CheckDir: ELBOW.Rcheck |
Warnings: 0 |
############################################################################## ############################################################################## ### ### Running command: ### ### rm -rf ELBOW.buildbin-libdir ELBOW.Rcheck && mkdir ELBOW.buildbin-libdir ELBOW.Rcheck && C:\Users\biocbuild\bbs-3.6-bioc\R\bin\R.exe CMD INSTALL --build --merge-multiarch --library=ELBOW.buildbin-libdir ELBOW_1.14.0.tar.gz >ELBOW.Rcheck\00install.out 2>&1 && cp ELBOW.Rcheck\00install.out ELBOW-install.out && C:\Users\biocbuild\bbs-3.6-bioc\R\bin\R.exe CMD check --library=ELBOW.buildbin-libdir --install="check:ELBOW-install.out" --force-multiarch --no-vignettes --timings ELBOW_1.14.0.tar.gz ### ############################################################################## ############################################################################## * using log directory 'C:/Users/biocbuild/bbs-3.6-bioc/meat/ELBOW.Rcheck' * using R version 3.4.4 (2018-03-15) * using platform: x86_64-w64-mingw32 (64-bit) * using session charset: ISO8859-1 * using option '--no-vignettes' * checking for file 'ELBOW/DESCRIPTION' ... OK * checking extension type ... Package * this is package 'ELBOW' version '1.14.0' * checking package namespace information ... OK * checking package dependencies ... OK * checking if this is a source package ... OK * checking if there is a namespace ... OK * checking for hidden files and directories ... OK * checking for portable file names ... OK * checking whether package 'ELBOW' can be installed ... OK * checking installed package size ... OK * checking package directory ... OK * checking 'build' directory ... OK * checking DESCRIPTION meta-information ... OK * checking top-level files ... OK * checking for left-over files ... OK * checking index information ... OK * checking package subdirectories ... OK * checking R files for non-ASCII characters ... OK * checking R files for syntax errors ... OK * loading checks for arch 'i386' ** checking whether the package can be loaded ... OK ** checking whether the package can be loaded with stated dependencies ... OK ** checking whether the package can be unloaded cleanly ... OK ** checking whether the namespace can be loaded with stated dependencies ... OK ** checking whether the namespace can be unloaded cleanly ... OK ** checking loading without being on the library search path ... OK * loading checks for arch 'x64' ** checking whether the package can be loaded ... OK ** checking whether the package can be loaded with stated dependencies ... OK ** checking whether the package can be unloaded cleanly ... OK ** checking whether the namespace can be loaded with stated dependencies ... OK ** checking whether the namespace can be unloaded cleanly ... OK ** checking loading without being on the library search path ... OK * checking dependencies in R code ... OK * checking S3 generic/method consistency ... OK * checking replacement functions ... OK * checking foreign function calls ... OK * checking R code for possible problems ... NOTE do_elbow: no visible global function definition for 'smooth.spline' do_elbow: no visible global function definition for 'predict' do_elbow_rnaseq: no visible global function definition for 'na.omit' get_pvalue: no visible global function definition for 'glm' get_pvalue: no visible global function definition for 'binomial' null_variance: no visible binding for global variable 'median' plot_dataset: no visible global function definition for 'plot' plot_dataset: no visible global function definition for 'abline' plot_elbow: no visible global function definition for 'plot' plot_elbow: no visible global function definition for 'abline' plot_elbow: no visible global function definition for 'lines' plot_elbow: no visible global function definition for 'text' replicates_to_fold: no visible global function definition for 'head' Undefined global functions or variables: abline binomial glm head lines median na.omit plot predict smooth.spline text Consider adding importFrom("graphics", "abline", "lines", "plot", "text") importFrom("stats", "binomial", "glm", "median", "na.omit", "predict", "smooth.spline") importFrom("utils", "head") to your NAMESPACE file. * checking Rd files ... OK * checking Rd metadata ... OK * checking Rd cross-references ... OK * checking for missing documentation entries ... OK * checking for code/documentation mismatches ... OK * checking Rd \usage sections ... OK * checking Rd contents ... OK * checking for unstated dependencies in examples ... OK * checking contents of 'data' directory ... OK * checking data for non-ASCII characters ... OK * checking data for ASCII and uncompressed saves ... OK * checking installed files from 'inst/doc' ... OK * checking files in 'vignettes' ... OK * checking examples ... ** running examples for arch 'i386' ... OK ** running examples for arch 'x64' ... OK Examples with CPU or elapsed time > 5s user system elapsed do_elbow_rnaseq 4.89 0.14 5.04 * checking for unstated dependencies in vignettes ... OK * checking package vignettes in 'inst/doc' ... OK * checking running R code from vignettes ... SKIPPED * checking re-building of vignette outputs ... SKIPPED * checking PDF version of manual ... OK * DONE Status: 1 NOTE See 'C:/Users/biocbuild/bbs-3.6-bioc/meat/ELBOW.Rcheck/00check.log' for details.
ELBOW.Rcheck/00install.out
install for i386 * installing *source* package 'ELBOW' ... ** R ** data ** inst ** preparing package for lazy loading ** help *** installing help indices converting help for package 'ELBOW' finding HTML links ... done ELBOW-package html EcoliMutMA html EcoliWT html GSE20986_design html GSE20986_eset_exprs html analyze_elbow html do_elbow html do_elbow_rnaseq html elbow_variance html extract_working_sets html get_elbow_limma html get_pvalue html null_variance html plot_dataset html plot_elbow html replicates_to_fold html yeast_nbinomTest_results html ** building package indices ** installing vignettes ** testing if installed package can be loaded In R CMD INSTALL install for x64 * installing *source* package 'ELBOW' ... ** testing if installed package can be loaded * MD5 sums packaged installation of 'ELBOW' as ELBOW_1.14.0.zip * DONE (ELBOW) In R CMD INSTALL In R CMD INSTALL
ELBOW.Rcheck/examples_i386/ELBOW-Ex.timings
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ELBOW.Rcheck/examples_x64/ELBOW-Ex.timings
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