Glyn Bradley
| Snapshot Date: 2018-04-11 16:45:18 -0400 (Wed, 11 Apr 2018) |
| URL: https://git.bioconductor.org/packages/CausalR |
| Branch: RELEASE_3_6 |
| Last Commit: 2646702 |
| Last Changed Date: 2017-10-30 12:40:51 -0400 (Mon, 30 Oct 2017) |
| Back to Multiple platform build/check report for BioC 3.6 |
|
This page was generated on 2018-04-12 13:26:22 -0400 (Thu, 12 Apr 2018).
| Package 186/1472 | Hostname | OS / Arch | INSTALL | BUILD | CHECK | BUILD BIN | ||||||
| CausalR 1.10.0 Glyn Bradley
| malbec1 | Linux (Ubuntu 16.04.1 LTS) / x86_64 | NotNeeded | OK | OK | | ||||||
| tokay1 | Windows Server 2012 R2 Standard / x64 | NotNeeded | OK | OK | [ OK ] | | ||||||
| veracruz1 | OS X 10.11.6 El Capitan / x86_64 | NotNeeded | OK | OK | OK | |
| Package: CausalR |
| Version: 1.10.0 |
| Command: cd CausalR.buildbin-libdir/CausalR && zip -r ../../CausalR_1.10.0.zip . & cd ../.. |
| StartedAt: 2018-04-12 04:28:41 -0400 (Thu, 12 Apr 2018) |
| EndedAt: 2018-04-12 04:29:19 -0400 (Thu, 12 Apr 2018) |
| EllapsedTime: 38.5 seconds |
| RetCode: 0 |
| Status: OK |
| PackageFile: CausalR_1.10.0.zip |
| PackageFileSize: 1.291 MiB |
############################################################################## ############################################################################## ### ### Running command: ### ### cd CausalR.buildbin-libdir/CausalR && zip -r ../../CausalR_1.10.0.zip . & cd ../.. ### ############################################################################## ############################################################################## adding: DESCRIPTION (332 bytes security) (deflated 39%) adding: doc/ (372 bytes security) (stored 0%) adding: doc/CausalR.pdf (332 bytes security) (deflated 8%) adding: doc/CausalR.R (332 bytes security) (deflated 84%) adding: doc/CausalR.rnw (332 bytes security) (deflated 69%) adding: doc/index.html (332 bytes security) (deflated 58%) adding: extdata/ (372 bytes security) (stored 0%) adding: extdata/testData.txt (332 bytes security) (deflated 56%) adding: extdata/testData1.txt (332 bytes security) (deflated 51%) adding: extdata/testNetwork.sif (332 bytes security) (deflated 82%) adding: extdata/testNetwork1.sif (332 bytes security) (deflated 65%) adding: help/ (372 bytes security) (stored 0%) adding: help/aliases.rds (332 bytes security) (stored 0%) adding: help/AnIndex (332 bytes security) (deflated 76%) adding: help/CausalR.rdb (332 bytes security) (deflated 2%) adding: help/CausalR.rdx (332 bytes security) (stored 0%) adding: help/paths.rds (332 bytes security) (stored 0%) adding: html/ (372 bytes security) (stored 0%) adding: html/00Index.html (332 bytes security) (deflated 80%) adding: html/AddIDsToVertices.html (332 bytes security) (deflated 46%) adding: html/AddWeightsToEdges.html (332 bytes security) (deflated 49%) adding: html/AnalyseExperimentalData.html (332 bytes security) (deflated 48%) adding: html/AnalysePredictionsList.html (332 bytes security) (deflated 53%) adding: html/CalculateEnrichmentPValue.html (332 bytes security) (deflated 53%) adding: html/CalculateSignificance.html (332 bytes security) (deflated 64%) adding: html/CalculateSignificanceUsingCubicAlgorithm.html (332 bytes security) (deflated 61%) adding: html/CalculateSignificanceUsingCubicAlgorithm1b.html (332 bytes security) (deflated 62%) adding: html/CalculateSignificanceUsingQuarticAlgorithm.html (332 bytes security) (deflated 62%) adding: html/CalculateTotalWeightForAllContingencyTables.html (332 bytes security) (deflated 51%) adding: html/CalculateWeightGivenValuesInThreeByThreeContingencyTable.html (332 bytes security) (deflated 56%) adding: html/CausalR-package.html (332 bytes security) (deflated 58%) adding: html/CheckPossibleValuesAreValid.html (332 bytes security) (deflated 56%) adding: html/CheckRowAndColumnSumValuesAreValid.html (332 bytes security) (deflated 55%) adding: html/CompareHypothesis.html (332 bytes security) (deflated 57%) adding: html/ComputeFinalDistribution.html (332 bytes security) (deflated 50%) adding: html/ComputePValueFromDistributionTable.html (332 bytes security) (deflated 55%) adding: html/CreateCCG.html (332 bytes security) (deflated 53%) adding: html/CreateCG.html (332 bytes security) (deflated 47%) adding: html/CreateNetworkFromTable.html (332 bytes security) (deflated 49%) adding: html/DetermineInteractionTypeOfPath.html (332 bytes security) (deflated 51%) adding: html/FindApproximateValuesThatWillMaximiseDValue.html (332 bytes security) (deflated 55%) adding: html/FindIdsOfConnectedNodesInSubgraph.html (332 bytes security) (deflated 55%) adding: html/FindMaximumDValue.html (332 bytes security) (deflated 56%) adding: html/GetAllPossibleRoundingCombinations.html (332 bytes security) (deflated 50%) adding: html/GetApproximateMaximumDValueFromThreeByTwoContingencyTable.html (332 bytes security) (deflated 57%) adding: html/GetApproximateMaximumDValueFromTwoByTwoContingencyTable.html (332 bytes security) (deflated 64%) adding: html/GetCombinationsOfCorrectandIncorrectPredictions.html (332 bytes security) (deflated 57%) adding: html/GetExplainedNodesOfCCG.html (332 bytes security) (deflated 56%) adding: html/GetInteractionInformation.html (332 bytes security) (deflated 51%) adding: html/GetMatrixOfCausalRelationships.html (332 bytes security) (deflated 55%) adding: html/GetMaxDValueForAFamily.html (332 bytes security) (deflated 58%) adding: html/GetMaxDValueForAThreeByTwoFamily.html (332 bytes security) (deflated 62%) adding: html/GetMaximumDValueFromTwoByTwoContingencyTable.html (332 bytes security) (deflated 58%) adding: html/GetNodeID.html (332 bytes security) (deflated 50%) adding: html/GetNodeName.html (332 bytes security) (deflated 50%) adding: html/GetNumberOfPositiveAndNegativeEntries.html (332 bytes security) (deflated 51%) adding: html/GetPathsInSifFormat.html (332 bytes security) (deflated 46%) adding: html/GetRegulatedNodes.html (332 bytes security) (deflated 56%) adding: html/GetRowAndColumnSumValues.html (332 bytes security) (deflated 52%) adding: html/GetScoreForNumbersOfCorrectandIncorrectPredictions.html (332 bytes security) (deflated 51%) adding: html/GetScoresForSingleNode.html (332 bytes security) (deflated 63%) adding: html/GetScoresWeightsMatrix.html (332 bytes security) (deflated 56%) adding: html/GetScoresWeightsMatrixByCubicAlg.html (332 bytes security) (deflated 54%) adding: html/GetSetOfDifferentiallyExpressedGenes.html (332 bytes security) (deflated 52%) adding: html/GetSetOfSignificantPredictions.html (332 bytes security) (deflated 52%) adding: html/GetShortestPathsFromCCG.html (332 bytes security) (deflated 55%) adding: html/GetWeightForNumbersOfCorrectandIncorrectPredictions.html (332 bytes security) (deflated 63%) adding: html/GetWeightsAboveHypothesisScoreAndTotalWeights.html (332 bytes security) (deflated 63%) adding: html/GetWeightsAboveHypothesisScoreForAThreeByTwoTable.html (332 bytes security) (deflated 65%) adding: html/GetWeightsFromInteractionInformation.html (332 bytes security) (deflated 51%) adding: html/MakePredictions.html (332 bytes security) (deflated 56%) adding: html/MakePredictionsFromCCG.html (332 bytes security) (deflated 56%) adding: html/MakePredictionsFromCG.html (332 bytes security) (deflated 56%) adding: html/OrderHypotheses.html (332 bytes security) (deflated 48%) adding: html/PlotGraphWithNodeNames.html (332 bytes security) (deflated 48%) adding: html/PopulateTheThreeByThreeContingencyTable.html (332 bytes security) (deflated 59%) adding: html/PopulateTwoByTwoContingencyTable.html (332 bytes security) (deflated 51%) adding: html/ProcessExperimentalData.html (332 bytes security) (deflated 51%) adding: html/R.css (332 bytes security) (deflated 75%) adding: html/RankTheHypotheses.html (332 bytes security) (deflated 65%) adding: html/ReadExperimentalData.html (332 bytes security) (deflated 54%) adding: html/ReadSifFileToTable.html (332 bytes security) (deflated 46%) adding: html/RemoveIDsNotInExperimentalData.html (332 bytes security) (deflated 55%) adding: html/runRankHypothesis.html (332 bytes security) (deflated 52%) adding: html/runSCANR.html (332 bytes security) (deflated 62%) adding: html/ScoreHypothesis.html (332 bytes security) (deflated 53%) adding: html/ValidateFormatOfDataTable.html (332 bytes security) (deflated 49%) adding: html/ValidateFormatOfTable.html (332 bytes security) (deflated 46%) adding: html/WriteAllExplainedNodesToSifFile.html (332 bytes security) (deflated 61%) adding: html/WriteExplainedNodesToSifFile.html (332 bytes security) (deflated 62%) adding: INDEX (332 bytes security) (deflated 74%) adding: MD5 (332 bytes security) (deflated 56%) adding: Meta/ (372 bytes security) (stored 0%) adding: Meta/features.rds (332 bytes security) (stored 0%) adding: Meta/hsearch.rds (332 bytes security) (deflated 2%) adding: Meta/links.rds (332 bytes security) (stored 0%) adding: Meta/nsInfo.rds (332 bytes security) (stored 0%) adding: Meta/package.rds (332 bytes security) (stored 0%) adding: Meta/Rd.rds (332 bytes security) (stored 0%) adding: Meta/vignette.rds (332 bytes security) (stored 0%) adding: NAMESPACE (332 bytes security) (deflated 61%) adding: R/ (372 bytes security) (stored 0%) adding: R/CausalR (332 bytes security) (deflated 41%) adding: R/CausalR.rdb (332 bytes security) (deflated 2%) adding: R/CausalR.rdx (332 bytes security) (stored 0%) adding: testData/ (372 bytes security) (stored 0%) adding: testData/CCGWithTwoLevels.txt (332 bytes security) (deflated 53%) adding: testData/network_with_conflict.sif (332 bytes security) (deflated 49%) adding: testData/network_with_difflength_conflict.sif (332 bytes security) (deflated 37%) adding: testData/network_with_loop.sif (332 bytes security) (deflated 35%) adding: testData/test_ExperimentalData.txt (332 bytes security) (deflated 27%) adding: testData/test_network.sif (332 bytes security) (deflated 16%) adding: unitTests/ (372 bytes security) (stored 0%) adding: unitTests/CCGWithTwoLevels.txt (332 bytes security) (deflated 53%) adding: unitTests/CheckEdgeForTest_SifFileReader.r (332 bytes security) (deflated 39%) adding: unitTests/CreateCGForTest_RankTheHypotheses.r (332 bytes security) (deflated 54%) adding: unitTests/CreateInteractionInfoTableForTest_SifFileReader.r (332 bytes security) (deflated 38%) adding: unitTests/CreateNetworkForTest_SifFileReader.r (332 bytes security) (deflated 38%) adding: unitTests/CreateSimpleNetworkForTest_ComputationalCausalGraphCreator.r (332 bytes security) (deflated 48%) adding: unitTests/CreateTestTableForTest_SifFileReader.r (332 bytes security) (deflated 37%) adding: unitTests/DetermineInteractionTypeOfPath.r (332 bytes security) (deflated 47%) adding: unitTests/GetMatrixOfCausalRelationships.r (332 bytes security) (deflated 59%) adding: unitTests/network_with_conflict.sif (332 bytes security) (deflated 49%) adding: unitTests/network_with_difflength_conflict.sif (332 bytes security) (deflated 37%) adding: unitTests/network_with_loop.sif (332 bytes security) (deflated 35%) adding: unitTests/RemoveIDsNotInExperimentalData.r (332 bytes security) (deflated 45%) adding: unitTests/test_CausalReasoningPredictions.R (332 bytes security) (deflated 86%) adding: unitTests/test_CubicAlgorithm.R (332 bytes security) (deflated 85%) adding: unitTests/test_CubicAlgorithm1b.R (332 bytes security) (deflated 75%) adding: unitTests/test_EnrichmentPValueCalculation.R (332 bytes security) (deflated 74%) adding: unitTests/test_ExperimentalData.txt (332 bytes security) (deflated 27%) adding: unitTests/test_ExperimentalDataReader.R (332 bytes security) (deflated 84%) adding: unitTests/test_HypothesisScorer.R (332 bytes security) (deflated 83%) adding: unitTests/test_InputNodes.txt (332 bytes security) (deflated 5%) adding: unitTests/test_network.sif (332 bytes security) (deflated 16%) adding: unitTests/test_NodeInclusionFile.txt (332 bytes security) (stored 0%) adding: unitTests/test_QuarticAlgorithm.R (332 bytes security) (deflated 87%) adding: unitTests/test_RankTheHypotheses.R (332 bytes security) (deflated 95%) adding: unitTests/test_SifFileReader.R (332 bytes security) (deflated 78%) adding: unitTests/test_SignificanceCalculator.R (332 bytes security) (deflated 83%) adding: unitTests/test_WriteExplainedNodesToSifFile.R (332 bytes security) (deflated 92%)