Package: BioSeqClass

Version: 1.36.0

Command: rm -rf BioSeqClass.buildbin-libdir BioSeqClass.Rcheck && mkdir BioSeqClass.buildbin-libdir BioSeqClass.Rcheck && C:\Users\biocbuild\bbs-3.6-bioc\R\bin\R.exe CMD INSTALL --build --merge-multiarch --library=BioSeqClass.buildbin-libdir BioSeqClass_1.36.0.tar.gz >BioSeqClass.Rcheck\00install.out 2>&1 && cp BioSeqClass.Rcheck\00install.out BioSeqClass-install.out && C:\Users\biocbuild\bbs-3.6-bioc\R\bin\R.exe CMD check --library=BioSeqClass.buildbin-libdir --install="check:BioSeqClass-install.out" --force-multiarch --no-vignettes --timings BioSeqClass_1.36.0.tar.gz

StartedAt: 2018-04-11 22:31:58 -0400 (Wed, 11 Apr 2018)

EndedAt: 2018-04-11 22:36:23 -0400 (Wed, 11 Apr 2018)

EllapsedTime: 265.2 seconds

RetCode: 0

Status:  OK

CheckDir: BioSeqClass.Rcheck

Warnings: 0

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### Running command:
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###   rm -rf BioSeqClass.buildbin-libdir BioSeqClass.Rcheck && mkdir BioSeqClass.buildbin-libdir BioSeqClass.Rcheck && C:\Users\biocbuild\bbs-3.6-bioc\R\bin\R.exe CMD INSTALL --build --merge-multiarch --library=BioSeqClass.buildbin-libdir BioSeqClass_1.36.0.tar.gz >BioSeqClass.Rcheck\00install.out 2>&1 && cp BioSeqClass.Rcheck\00install.out BioSeqClass-install.out  &&  C:\Users\biocbuild\bbs-3.6-bioc\R\bin\R.exe CMD check --library=BioSeqClass.buildbin-libdir --install="check:BioSeqClass-install.out" --force-multiarch --no-vignettes --timings BioSeqClass_1.36.0.tar.gz
###
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* using log directory 'C:/Users/biocbuild/bbs-3.6-bioc/meat/BioSeqClass.Rcheck'
* using R version 3.4.4 (2018-03-15)
* using platform: x86_64-w64-mingw32 (64-bit)
* using session charset: ISO8859-1
* using option '--no-vignettes'
* checking for file 'BioSeqClass/DESCRIPTION' ... OK
* this is package 'BioSeqClass' version '1.36.0'
* checking package namespace information ... OK
* checking package dependencies ... OK
* checking if this is a source package ... OK
* checking if there is a namespace ... OK
* checking for hidden files and directories ... OK
* checking for portable file names ... OK
* checking whether package 'BioSeqClass' can be installed ... OK
* checking installed package size ... NOTE
  installed size is  6.8Mb
  sub-directories of 1Mb or more:
    data      2.9Mb
    scripts   3.0Mb
* checking package directory ... OK
* checking 'build' directory ... OK
* checking DESCRIPTION meta-information ... NOTE
Malformed Description field: should contain one or more complete sentences.
Package listed in more than one of Depends, Imports, Suggests, Enhances:
  'scatterplot3d'
A package should be listed in only one of these fields.
* checking top-level files ... OK
* checking for left-over files ... OK
* checking index information ... OK
* checking package subdirectories ... OK
* checking R files for non-ASCII characters ... OK
* checking R files for syntax errors ... OK
* loading checks for arch 'i386'
** checking whether the package can be loaded ... OK
** checking whether the package can be loaded with stated dependencies ... OK
** checking whether the package can be unloaded cleanly ... OK
** checking whether the namespace can be loaded with stated dependencies ... OK
** checking whether the namespace can be unloaded cleanly ... OK
** checking loading without being on the library search path ... OK
* loading checks for arch 'x64'
** checking whether the package can be loaded ... OK
** checking whether the package can be loaded with stated dependencies ... OK
** checking whether the package can be unloaded cleanly ... OK
** checking whether the namespace can be loaded with stated dependencies ... OK
** checking whether the namespace can be unloaded cleanly ... OK
** checking loading without being on the library search path ... OK
* checking dependencies in R code ... NOTE
Package in Depends field not imported from: 'scatterplot3d'
  These packages need to be imported from (in the NAMESPACE file)
  for when this namespace is loaded but not attached.
* checking S3 generic/method consistency ... OK
* checking replacement functions ... OK
* checking foreign function calls ... OK
* checking R code for possible problems ... NOTE
classifyModelCTREELIBSVM: no visible global function definition for
  'plot'
Undefined global functions or variables:
  plot
Consider adding
  importFrom("graphics", "plot")
to your NAMESPACE file.
* checking Rd files ... OK
* checking Rd metadata ... OK
* checking Rd cross-references ... OK
* checking for missing documentation entries ... OK
* checking for code/documentation mismatches ... OK
* checking Rd \usage sections ... OK
* checking Rd contents ... OK
* checking for unstated dependencies in examples ... OK
* checking contents of 'data' directory ... OK
* checking data for non-ASCII characters ... OK
* checking data for ASCII and uncompressed saves ... OK
* checking installed files from 'inst/doc' ... OK
* checking files in 'vignettes' ... OK
* checking examples ...
** running examples for arch 'i386' ... OK
Examples with CPU or elapsed time > 5s
         user system elapsed
classify 5.02   0.09   23.81
** running examples for arch 'x64' ... OK
Examples with CPU or elapsed time > 5s
         user system elapsed
classify 5.34   0.22    6.88
* checking for unstated dependencies in vignettes ... OK
* checking package vignettes in 'inst/doc' ... OK
* checking running R code from vignettes ... SKIPPED
* checking re-building of vignette outputs ... SKIPPED
* checking PDF version of manual ... OK
* DONE

Status: 4 NOTEs
See
  'C:/Users/biocbuild/bbs-3.6-bioc/meat/BioSeqClass.Rcheck/00check.log'
for details.

install for i386

* installing *source* package 'BioSeqClass' ...
** R
** data
** inst
** preparing package for lazy loading
** help
*** installing help indices
  converting help for package 'BioSeqClass'
    finding HTML links ... done
    basic                                   html  
    classify                                html  
    featureAAindex                          html  
    featureBDNAVIDEO                        html  
    featureBinary                           html  
    featureCKSAAP                           html  
    featureCTD                              html  
    featureDIPRODB                          html  
    featureDOMAIN                           html  
    featureEvaluate                         html  
    featureFragmentComposition              html  
    featureGapPairComposition               html  
    featureHydro                            html  
    featurePSSM                             html  
    featurePseudoAAComp                     html  
    featureSSC                              html  
    hr                                      html  
    model                                   html  
    performance                             html  
    selectFFS                               html  
    selectWeka                              html  
    zzz                                     html  
** building package indices
** installing vignettes
** testing if installed package can be loaded
In R CMD INSTALL

install for x64

* installing *source* package 'BioSeqClass' ...
** testing if installed package can be loaded
* MD5 sums
packaged installation of 'BioSeqClass' as BioSeqClass_1.36.0.zip
* DONE (BioSeqClass)
In R CMD INSTALL
In R CMD INSTALL