Back to Multiple platform build/check report for BioC 3.6 |
|
This page was generated on 2018-04-12 13:22:42 -0400 (Thu, 12 Apr 2018).
Package 54/1472 | Hostname | OS / Arch | INSTALL | BUILD | CHECK | BUILD BIN | ||||||
AnnotationHub 2.10.1 Bioconductor Package Maintainer
| malbec1 | Linux (Ubuntu 16.04.1 LTS) / x86_64 | OK | OK | OK | |||||||
tokay1 | Windows Server 2012 R2 Standard / x64 | OK | OK | [ OK ] | OK | |||||||
veracruz1 | OS X 10.11.6 El Capitan / x86_64 | OK | OK | OK | OK |
Package: AnnotationHub |
Version: 2.10.1 |
Command: rm -rf AnnotationHub.buildbin-libdir AnnotationHub.Rcheck && mkdir AnnotationHub.buildbin-libdir AnnotationHub.Rcheck && C:\Users\biocbuild\bbs-3.6-bioc\R\bin\R.exe CMD INSTALL --build --merge-multiarch --library=AnnotationHub.buildbin-libdir AnnotationHub_2.10.1.tar.gz >AnnotationHub.Rcheck\00install.out 2>&1 && cp AnnotationHub.Rcheck\00install.out AnnotationHub-install.out && C:\Users\biocbuild\bbs-3.6-bioc\R\bin\R.exe CMD check --library=AnnotationHub.buildbin-libdir --install="check:AnnotationHub-install.out" --force-multiarch --no-vignettes --timings AnnotationHub_2.10.1.tar.gz |
StartedAt: 2018-04-11 22:12:50 -0400 (Wed, 11 Apr 2018) |
EndedAt: 2018-04-11 22:17:05 -0400 (Wed, 11 Apr 2018) |
EllapsedTime: 254.5 seconds |
RetCode: 0 |
Status: OK |
CheckDir: AnnotationHub.Rcheck |
Warnings: 0 |
############################################################################## ############################################################################## ### ### Running command: ### ### rm -rf AnnotationHub.buildbin-libdir AnnotationHub.Rcheck && mkdir AnnotationHub.buildbin-libdir AnnotationHub.Rcheck && C:\Users\biocbuild\bbs-3.6-bioc\R\bin\R.exe CMD INSTALL --build --merge-multiarch --library=AnnotationHub.buildbin-libdir AnnotationHub_2.10.1.tar.gz >AnnotationHub.Rcheck\00install.out 2>&1 && cp AnnotationHub.Rcheck\00install.out AnnotationHub-install.out && C:\Users\biocbuild\bbs-3.6-bioc\R\bin\R.exe CMD check --library=AnnotationHub.buildbin-libdir --install="check:AnnotationHub-install.out" --force-multiarch --no-vignettes --timings AnnotationHub_2.10.1.tar.gz ### ############################################################################## ############################################################################## * using log directory 'C:/Users/biocbuild/bbs-3.6-bioc/meat/AnnotationHub.Rcheck' * using R version 3.4.4 (2018-03-15) * using platform: x86_64-w64-mingw32 (64-bit) * using session charset: ISO8859-1 * using option '--no-vignettes' * checking for file 'AnnotationHub/DESCRIPTION' ... OK * checking extension type ... Package * this is package 'AnnotationHub' version '2.10.1' * checking package namespace information ... OK * checking package dependencies ... OK * checking if this is a source package ... OK * checking if there is a namespace ... OK * checking for hidden files and directories ... OK * checking for portable file names ... OK * checking whether package 'AnnotationHub' can be installed ... OK * checking installed package size ... OK * checking package directory ... OK * checking 'build' directory ... OK * checking DESCRIPTION meta-information ... OK * checking top-level files ... OK * checking for left-over files ... OK * checking index information ... OK * checking package subdirectories ... OK * checking R files for non-ASCII characters ... OK * checking R files for syntax errors ... OK * loading checks for arch 'i386' ** checking whether the package can be loaded ... OK ** checking whether the package can be loaded with stated dependencies ... OK ** checking whether the package can be unloaded cleanly ... OK ** checking whether the namespace can be loaded with stated dependencies ... OK ** checking whether the namespace can be unloaded cleanly ... OK * loading checks for arch 'x64' ** checking whether the package can be loaded ... OK ** checking whether the package can be loaded with stated dependencies ... OK ** checking whether the package can be unloaded cleanly ... OK ** checking whether the namespace can be loaded with stated dependencies ... OK ** checking whether the namespace can be unloaded cleanly ... OK * checking dependencies in R code ... OK * checking S3 generic/method consistency ... OK * checking replacement functions ... OK * checking foreign function calls ... OK * checking R code for possible problems ... NOTE .get1,EnsDbResource: no visible global function definition for 'EnsDb' Undefined global functions or variables: EnsDb * checking Rd files ... OK * checking Rd metadata ... OK * checking Rd cross-references ... OK * checking for missing documentation entries ... OK * checking for code/documentation mismatches ... OK * checking Rd \usage sections ... OK * checking Rd contents ... OK * checking for unstated dependencies in examples ... OK * checking installed files from 'inst/doc' ... OK * checking files in 'vignettes' ... OK * checking examples ... ** running examples for arch 'i386' ... OK Examples with CPU or elapsed time > 5s user system elapsed AnnotationHub-class 42.45 0.97 48.84 ** running examples for arch 'x64' ... OK Examples with CPU or elapsed time > 5s user system elapsed AnnotationHub-class 41.47 0.88 42.62 * checking for unstated dependencies in 'tests' ... OK * checking tests ... ** running tests for arch 'i386' ... Running 'runTests.R' OK ** running tests for arch 'x64' ... Running 'runTests.R' OK * checking for unstated dependencies in vignettes ... OK * checking package vignettes in 'inst/doc' ... OK * checking running R code from vignettes ... SKIPPED * checking re-building of vignette outputs ... SKIPPED * checking PDF version of manual ... OK * DONE Status: 1 NOTE See 'C:/Users/biocbuild/bbs-3.6-bioc/meat/AnnotationHub.Rcheck/00check.log' for details.
AnnotationHub.Rcheck/00install.out
install for i386 * installing *source* package 'AnnotationHub' ... ** R ** inst ** preparing package for lazy loading ** help *** installing help indices converting help for package 'AnnotationHub' finding HTML links ... done AnnotationHub-class html AnnotationHub-package html AnnotationHubResource-class html getAnnotationHubOption html listResources html readMetadataFromCsv html ** building package indices ** installing vignettes ** testing if installed package can be loaded In R CMD INSTALL install for x64 * installing *source* package 'AnnotationHub' ... ** testing if installed package can be loaded * MD5 sums packaged installation of 'AnnotationHub' as AnnotationHub_2.10.1.zip * DONE (AnnotationHub) In R CMD INSTALL In R CMD INSTALL
AnnotationHub.Rcheck/tests_i386/runTests.Rout R version 3.4.4 (2018-03-15) -- "Someone to Lean On" Copyright (C) 2018 The R Foundation for Statistical Computing Platform: i386-w64-mingw32/i386 (32-bit) R is free software and comes with ABSOLUTELY NO WARRANTY. You are welcome to redistribute it under certain conditions. Type 'license()' or 'licence()' for distribution details. R is a collaborative project with many contributors. Type 'contributors()' for more information and 'citation()' on how to cite R or R packages in publications. Type 'demo()' for some demos, 'help()' for on-line help, or 'help.start()' for an HTML browser interface to help. Type 'q()' to quit R. > BiocGenerics:::testPackage("AnnotationHub") Attaching package: 'BiocGenerics' The following objects are masked from 'package:parallel': clusterApply, clusterApplyLB, clusterCall, clusterEvalQ, clusterExport, clusterMap, parApply, parCapply, parLapply, parLapplyLB, parRapply, parSapply, parSapplyLB The following objects are masked from 'package:stats': IQR, mad, sd, var, xtabs The following objects are masked from 'package:base': Filter, Find, Map, Position, Reduce, anyDuplicated, append, as.data.frame, cbind, colMeans, colSums, colnames, do.call, duplicated, eval, evalq, get, grep, grepl, intersect, is.unsorted, lapply, lengths, mapply, match, mget, order, paste, pmax, pmax.int, pmin, pmin.int, rank, rbind, rowMeans, rowSums, rownames, sapply, setdiff, sort, table, tapply, union, unique, unsplit, which, which.max, which.min snapshotDate(): 2017-10-27 snapshotDate(): 2017-10-27 snapshotDate(): 2017-10-27 snapshotDate(): 2017-10-27 snapshotDate(): 2017-10-27 snapshotDate(): 2017-10-27 using guess work to populate seqinfo require("xxx_foo") RUNIT TEST PROTOCOL -- Wed Apr 11 22:16:40 2018 *********************************************** Number of test functions: 7 Number of errors: 0 Number of failures: 0 1 Test Suite : AnnotationHub RUnit Tests - 7 test functions, 0 errors, 0 failures Number of test functions: 7 Number of errors: 0 Number of failures: 0 Warning messages: 1: call dbDisconnect() when finished working with a connection 2: In library(package, lib.loc = lib.loc, character.only = TRUE, logical.return = TRUE, : there is no package called 'xxx_foo' > > proc.time() user system elapsed 13.57 1.14 24.93 |
AnnotationHub.Rcheck/tests_x64/runTests.Rout R version 3.4.4 (2018-03-15) -- "Someone to Lean On" Copyright (C) 2018 The R Foundation for Statistical Computing Platform: x86_64-w64-mingw32/x64 (64-bit) R is free software and comes with ABSOLUTELY NO WARRANTY. You are welcome to redistribute it under certain conditions. Type 'license()' or 'licence()' for distribution details. R is a collaborative project with many contributors. Type 'contributors()' for more information and 'citation()' on how to cite R or R packages in publications. Type 'demo()' for some demos, 'help()' for on-line help, or 'help.start()' for an HTML browser interface to help. Type 'q()' to quit R. > BiocGenerics:::testPackage("AnnotationHub") Attaching package: 'BiocGenerics' The following objects are masked from 'package:parallel': clusterApply, clusterApplyLB, clusterCall, clusterEvalQ, clusterExport, clusterMap, parApply, parCapply, parLapply, parLapplyLB, parRapply, parSapply, parSapplyLB The following objects are masked from 'package:stats': IQR, mad, sd, var, xtabs The following objects are masked from 'package:base': Filter, Find, Map, Position, Reduce, anyDuplicated, append, as.data.frame, cbind, colMeans, colSums, colnames, do.call, duplicated, eval, evalq, get, grep, grepl, intersect, is.unsorted, lapply, lengths, mapply, match, mget, order, paste, pmax, pmax.int, pmin, pmin.int, rank, rbind, rowMeans, rowSums, rownames, sapply, setdiff, sort, table, tapply, union, unique, unsplit, which, which.max, which.min snapshotDate(): 2017-10-27 snapshotDate(): 2017-10-27 snapshotDate(): 2017-10-27 snapshotDate(): 2017-10-27 snapshotDate(): 2017-10-27 snapshotDate(): 2017-10-27 using guess work to populate seqinfo require("xxx_foo") RUNIT TEST PROTOCOL -- Wed Apr 11 22:16:57 2018 *********************************************** Number of test functions: 7 Number of errors: 0 Number of failures: 0 1 Test Suite : AnnotationHub RUnit Tests - 7 test functions, 0 errors, 0 failures Number of test functions: 7 Number of errors: 0 Number of failures: 0 Warning messages: 1: call dbDisconnect() when finished working with a connection 2: In library(package, lib.loc = lib.loc, character.only = TRUE, logical.return = TRUE, : there is no package called 'xxx_foo' > > proc.time() user system elapsed 14.56 1.01 17.64 |
AnnotationHub.Rcheck/examples_i386/AnnotationHub-Ex.timings
|
AnnotationHub.Rcheck/examples_x64/AnnotationHub-Ex.timings
|