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BioC 3.6: BUILD BIN report for systemPipeR on tokay1

This page was generated on 2017-08-16 13:33:22 -0400 (Wed, 16 Aug 2017).

Package 1328/1410HostnameOS / ArchINSTALLBUILDCHECKBUILD BIN
systemPipeR 1.11.0
Thomas Girke
Snapshot Date: 2017-08-15 17:18:21 -0400 (Tue, 15 Aug 2017)
URL: https://hedgehog.fhcrc.org/bioconductor/trunk/madman/Rpacks/systemPipeR
Last Changed Rev: 129129 / Revision: 131943
Last Changed Date: 2017-04-24 15:50:57 -0400 (Mon, 24 Apr 2017)
malbec1 Linux (Ubuntu 16.04.1 LTS) / x86_64  OK  OK  OK UNNEEDED, same version exists in internal repository
tokay1 Windows Server 2012 R2 Standard / x64  OK  OK  OK [ OK ]UNNEEDED, same version exists in internal repository
veracruz1 OS X 10.11.6 El Capitan / x86_64  OK  OK  OK  OK UNNEEDED, same version exists in internal repository

Summary

Package: systemPipeR
Version: 1.11.0
Command: cd systemPipeR.buildbin-libdir/systemPipeR && zip -r ../../systemPipeR_1.11.0.zip . & cd ../..
StartedAt: 2017-08-16 04:11:47 -0400 (Wed, 16 Aug 2017)
EndedAt: 2017-08-16 04:12:25 -0400 (Wed, 16 Aug 2017)
EllapsedTime: 38.4 seconds
RetCode: 0
Status:  OK  
PackageFile: systemPipeR_1.11.0.zip
PackageFileSize: 8.216 MiB

Command output

##############################################################################
##############################################################################
###
### Running command:
###
###   cd systemPipeR.buildbin-libdir/systemPipeR && zip -r ../../systemPipeR_1.11.0.zip . & cd ../..
###
##############################################################################
##############################################################################


  adding: CITATION (332 bytes security) (deflated 7%)
  adding: DESCRIPTION (332 bytes security) (deflated 46%)
  adding: doc/ (372 bytes security) (stored 0%)
  adding: doc/index.html (332 bytes security) (deflated 80%)
  adding: doc/systemPipeChIPseq.pdf (332 bytes security) (deflated 11%)
  adding: doc/systemPipeChIPseq.R (332 bytes security) (deflated 73%)
  adding: doc/systemPipeChIPseq.Rnw (332 bytes security) (deflated 65%)
  adding: doc/systemPipeR.html (332 bytes security) (deflated 35%)
  adding: doc/systemPipeR.R (332 bytes security) (deflated 77%)
  adding: doc/systemPipeR.Rmd (332 bytes security) (deflated 71%)
  adding: doc/systemPipeRIBOseq.pdf (332 bytes security) (deflated 16%)
  adding: doc/systemPipeRIBOseq.R (332 bytes security) (deflated 76%)
  adding: doc/systemPipeRIBOseq.Rnw (332 bytes security) (deflated 67%)
  adding: doc/systemPipeRNAseq.pdf (332 bytes security) (deflated 14%)
  adding: doc/systemPipeRNAseq.R (332 bytes security) (deflated 70%)
  adding: doc/systemPipeRNAseq.Rnw (332 bytes security) (deflated 63%)
  adding: doc/systemPipeVARseq.pdf (332 bytes security) (deflated 12%)
  adding: doc/systemPipeVARseq.R (332 bytes security) (deflated 81%)
  adding: doc/systemPipeVARseq.Rnw (332 bytes security) (deflated 70%)
  adding: extdata/ (372 bytes security) (stored 0%)
  adding: extdata/.BatchJobs.R (332 bytes security) (deflated 19%)
  adding: extdata/alignStats.xls (332 bytes security) (deflated 62%)
  adding: extdata/annotate_peaks.param (332 bytes security) (deflated 44%)
  adding: extdata/annotate_vars.param (332 bytes security) (deflated 43%)
  adding: extdata/bowtiePE.param (332 bytes security) (deflated 42%)
  adding: extdata/bowtieSE.param (332 bytes security) (deflated 41%)
  adding: extdata/bwa.param (332 bytes security) (deflated 43%)
  adding: extdata/countDFeByg.xls (332 bytes security) (deflated 61%)
  adding: extdata/count_rangesets.param (332 bytes security) (deflated 44%)
  adding: extdata/custom_Fct.R (332 bytes security) (deflated 58%)
  adding: extdata/filter_gatk.param (332 bytes security) (deflated 43%)
  adding: extdata/filter_sambcf.param (332 bytes security) (deflated 43%)
  adding: extdata/filter_vartools.param (332 bytes security) (deflated 43%)
  adding: extdata/gatk.param (332 bytes security) (deflated 50%)
  adding: extdata/gatk_run.sh (332 bytes security) (deflated 61%)
  adding: extdata/gsnap.param (332 bytes security) (deflated 43%)
  adding: extdata/macs2.param (332 bytes security) (deflated 45%)
  adding: extdata/macs2_noinput.param (332 bytes security) (deflated 45%)
  adding: extdata/Makefile (332 bytes security) (deflated 62%)
  adding: extdata/rpkmDFeByg.xls (332 bytes security) (deflated 49%)
  adding: extdata/rsubread.param (332 bytes security) (deflated 43%)
  adding: extdata/rundiff.param (332 bytes security) (deflated 43%)
  adding: extdata/sambcf.param (332 bytes security) (deflated 49%)
  adding: extdata/sambcf_run.sh (332 bytes security) (deflated 54%)
  adding: extdata/slides/ (372 bytes security) (stored 0%)
  adding: extdata/slides/bibtex.bib (332 bytes security) (deflated 69%)
  adding: extdata/slides/images/ (372 bytes security) (stored 0%)
  adding: extdata/slides/images/SystemPipeR_Workflow.png (332 bytes security) (deflated 1%)
  adding: extdata/slides/logo.png (332 bytes security) (deflated 1%)
  adding: extdata/slides/systemPipeRslides.html (332 bytes security) (deflated 43%)
  adding: extdata/slides/systemPipeRslides.R (332 bytes security) (deflated 70%)
  adding: extdata/slides/systemPipeRslides.Rmd (332 bytes security) (deflated 64%)
  adding: extdata/slides/systemPipeRslides_cache/ (372 bytes security) (stored 0%)
  adding: extdata/slides/systemPipeRslides_cache/html/ (372 bytes security) (stored 0%)
  adding: extdata/targets.txt (332 bytes security) (deflated 65%)
  adding: extdata/targetsPE.txt (332 bytes security) (deflated 70%)
  adding: extdata/targetsPE_chip.txt (332 bytes security) (deflated 69%)
  adding: extdata/targets_chip.txt (332 bytes security) (deflated 64%)
  adding: extdata/tophat.param (332 bytes security) (deflated 42%)
  adding: extdata/torque.tmpl (332 bytes security) (deflated 49%)
  adding: extdata/trim.param (332 bytes security) (deflated 43%)
  adding: extdata/trimPE.param (332 bytes security) (deflated 49%)
  adding: extdata/vartools.param (332 bytes security) (deflated 43%)
  adding: extdata/vignette_archive/ (372 bytes security) (stored 0%)
  adding: extdata/vignette_archive/systemPipeR.pdf (332 bytes security) (deflated 8%)
  adding: extdata/vignette_archive/systemPipeR.R (332 bytes security) (deflated 74%)
  adding: extdata/vignette_archive/systemPipeR.Rnw (332 bytes security) (deflated 68%)
  adding: help/ (372 bytes security) (stored 0%)
  adding: help/aliases.rds (332 bytes security) (stored 0%)
  adding: help/AnIndex (332 bytes security) (deflated 78%)
  adding: help/paths.rds (332 bytes security) (stored 0%)
  adding: help/systemPipeR.rdb (332 bytes security) (deflated 1%)
  adding: help/systemPipeR.rdx (332 bytes security) (stored 0%)
  adding: html/ (372 bytes security) (stored 0%)
  adding: html/00Index.html (332 bytes security) (deflated 87%)
  adding: html/R.css (332 bytes security) (deflated 75%)
  adding: INDEX (332 bytes security) (deflated 60%)
  adding: MD5 (332 bytes security) (deflated 52%)
  adding: Meta/ (372 bytes security) (stored 0%)
  adding: Meta/features.rds (332 bytes security) (stored 0%)
  adding: Meta/hsearch.rds (332 bytes security) (stored 0%)
  adding: Meta/links.rds (332 bytes security) (stored 0%)
  adding: Meta/nsInfo.rds (332 bytes security) (stored 0%)
  adding: Meta/package.rds (332 bytes security) (stored 0%)
  adding: Meta/Rd.rds (332 bytes security) (stored 0%)
  adding: Meta/vignette.rds (332 bytes security) (stored 0%)
  adding: NAMESPACE (332 bytes security) (deflated 50%)
  adding: NEWS (332 bytes security) (deflated 54%)
  adding: R/ (372 bytes security) (stored 0%)
  adding: R/systemPipeR (332 bytes security) (deflated 41%)
  adding: R/systemPipeR.rdb (332 bytes security) (deflated 9%)
  adding: R/systemPipeR.rdx (332 bytes security) (deflated 1%)
  adding: unitTests/ (372 bytes security) (stored 0%)
  adding: unitTests/SRR446027_1.fastq (332 bytes security) (stored 0%)
  adding: unitTests/SRR446028_1.fastq (332 bytes security) (stored 0%)
  adding: unitTests/SRR446029_1.fastq (332 bytes security) (stored 0%)
  adding: unitTests/SRR446030_1.fastq (332 bytes security) (stored 0%)
  adding: unitTests/targets.txt (332 bytes security) (deflated 39%)
  adding: unitTests/test_classes.R (332 bytes security) (deflated 32%)
  adding: unitTests/tophat.param (332 bytes security) (deflated 42%)