snapCGH 1.47.0
John Marioni
| Snapshot Date: 2017-08-15 17:18:21 -0400 (Tue, 15 Aug 2017) | | URL: https://hedgehog.fhcrc.org/bioconductor/trunk/madman/Rpacks/snapCGH | | Last Changed Rev: 129129 / Revision: 131943 | | Last Changed Date: 2017-04-24 15:50:57 -0400 (Mon, 24 Apr 2017) |
| malbec1 | Linux (Ubuntu 16.04.1 LTS) / x86_64 | OK | OK | OK | |  |
| tokay1 | Windows Server 2012 R2 Standard / x64 | OK | OK | OK | OK | |
| veracruz1 | OS X 10.11.6 El Capitan / x86_64 | [ OK ] | OK | OK | OK | |
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### Running command:
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### /Library/Frameworks/R.framework/Versions/Current/Resources/bin/R CMD INSTALL snapCGH
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* installing to library ‘/Library/Frameworks/R.framework/Versions/3.4/Resources/library’
* installing *source* package ‘snapCGH’ ...
** libs
clang -I/Library/Frameworks/R.framework/Resources/include -DNDEBUG -I/usr/local/include -fPIC -Wall -g -O2 -c optimizer.c -o optimizer.o
optimizer.c:26:10: warning: unused variable 'denom' [-Wunused-variable]
double denom, temp, temp2, temp3;
^
optimizer.c:26:23: warning: unused variable 'temp2' [-Wunused-variable]
double denom, temp, temp2, temp3;
^
optimizer.c:26:30: warning: unused variable 'temp3' [-Wunused-variable]
double denom, temp, temp2, temp3;
^
optimizer.c:195:30: warning: unused variable 'temp3' [-Wunused-variable]
double denom, temp, temp2, temp3;
^
optimizer.c:195:23: warning: unused variable 'temp2' [-Wunused-variable]
double denom, temp, temp2, temp3;
^
optimizer.c:194:69: warning: unused variable 'alphahat' [-Wunused-variable]
double gammaA[3][3], gammaB[3][3], gammaC[3][3], alpha[3][nrow1], alphahat[3][nrow1], emis_prob[3][nrow1];
^
optimizer.c:195:10: warning: unused variable 'denom' [-Wunused-variable]
double denom, temp, temp2, temp3;
^
optimizer.c:413:10: warning: unused variable 'denom' [-Wunused-variable]
double denom, temp, temp2, temp3;
^
optimizer.c:412:69: warning: unused variable 'alphahat' [-Wunused-variable]
double gammaA[4][4], gammaB[4][4], gammaC[4][4], alpha[4][nrow1], alphahat[4][nrow1], emis_prob[4][nrow1];
^
optimizer.c:413:23: warning: unused variable 'temp2' [-Wunused-variable]
double denom, temp, temp2, temp3;
^
optimizer.c:413:30: warning: unused variable 'temp3' [-Wunused-variable]
double denom, temp, temp2, temp3;
^
optimizer.c:687:23: warning: unused variable 'temp2' [-Wunused-variable]
double denom, temp, temp2, temp3;
^
optimizer.c:687:30: warning: unused variable 'temp3' [-Wunused-variable]
double denom, temp, temp2, temp3;
^
optimizer.c:686:69: warning: unused variable 'alphahat' [-Wunused-variable]
double gammaA[5][5], gammaB[5][5], gammaC[5][5], alpha[5][nrow1], alphahat[5][nrow1], emis_prob[5][nrow1];
^
optimizer.c:687:10: warning: unused variable 'denom' [-Wunused-variable]
double denom, temp, temp2, temp3;
^
15 warnings generated.
clang -dynamiclib -Wl,-headerpad_max_install_names -undefined dynamic_lookup -single_module -multiply_defined suppress -L/Library/Frameworks/R.framework/Resources/lib -L/usr/local/lib -o snapCGH.so optimizer.o -F/Library/Frameworks/R.framework/.. -framework R -Wl,-framework -Wl,CoreFoundation
installing to /Library/Frameworks/R.framework/Versions/3.4/Resources/library/snapCGH/libs
** R
** data
** inst
** preparing package for lazy loading
** help
*** installing help indices
** building package indices
** installing vignettes
** testing if installed package can be loaded
* DONE (snapCGH)