BioC 3.6: CHECK report for miRBaseConverter on tokay1

Package: miRBaseConverter

Version: 0.99.12

Command: rm -rf miRBaseConverter.buildbin-libdir miRBaseConverter.Rcheck && mkdir miRBaseConverter.buildbin-libdir miRBaseConverter.Rcheck && C:\Users\biocbuild\bbs-3.6-bioc\R\bin\R.exe CMD INSTALL --build --merge-multiarch --library=miRBaseConverter.buildbin-libdir miRBaseConverter_0.99.12.tar.gz >miRBaseConverter.Rcheck\00install.out 2>&1 && cp miRBaseConverter.Rcheck\00install.out miRBaseConverter-install.out && C:\Users\biocbuild\bbs-3.6-bioc\R\bin\R.exe CMD check --library=miRBaseConverter.buildbin-libdir --install="check:miRBaseConverter-install.out" --force-multiarch --no-vignettes --timings miRBaseConverter_0.99.12.tar.gz

StartedAt: 2017-08-16 00:54:38 -0400 (Wed, 16 Aug 2017)

EndedAt: 2017-08-16 00:56:08 -0400 (Wed, 16 Aug 2017)

EllapsedTime: 90.6 seconds

RetCode: 0

Status:  OK

CheckDir: miRBaseConverter.Rcheck

Warnings: 0

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### Running command:
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###   rm -rf miRBaseConverter.buildbin-libdir miRBaseConverter.Rcheck && mkdir miRBaseConverter.buildbin-libdir miRBaseConverter.Rcheck && C:\Users\biocbuild\bbs-3.6-bioc\R\bin\R.exe CMD INSTALL --build --merge-multiarch --library=miRBaseConverter.buildbin-libdir miRBaseConverter_0.99.12.tar.gz >miRBaseConverter.Rcheck\00install.out 2>&1 && cp miRBaseConverter.Rcheck\00install.out miRBaseConverter-install.out  &&  C:\Users\biocbuild\bbs-3.6-bioc\R\bin\R.exe CMD check --library=miRBaseConverter.buildbin-libdir --install="check:miRBaseConverter-install.out" --force-multiarch --no-vignettes --timings miRBaseConverter_0.99.12.tar.gz
###
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* using log directory 'C:/Users/biocbuild/bbs-3.6-bioc/meat/miRBaseConverter.Rcheck'
* using R version 3.4.1 (2017-06-30)
* using platform: x86_64-w64-mingw32 (64-bit)
* using session charset: ISO8859-1
* using option '--no-vignettes'
* checking for file 'miRBaseConverter/DESCRIPTION' ... OK
* checking extension type ... Package
* this is package 'miRBaseConverter' version '0.99.12'
* checking package namespace information ... OK
* checking package dependencies ... OK
* checking if this is a source package ... OK
* checking if there is a namespace ... OK
* checking for hidden files and directories ... OK
* checking for portable file names ... OK
* checking whether package 'miRBaseConverter' can be installed ... OK
* checking installed package size ... OK
* checking package directory ... OK
* checking 'build' directory ... OK
* checking DESCRIPTION meta-information ... OK
* checking top-level files ... OK
* checking for left-over files ... OK
* checking index information ... OK
* checking package subdirectories ... OK
* checking R files for non-ASCII characters ... OK
* checking R files for syntax errors ... OK
* loading checks for arch 'i386'
** checking whether the package can be loaded ... OK
** checking whether the package can be loaded with stated dependencies ... OK
** checking whether the package can be unloaded cleanly ... OK
** checking whether the namespace can be loaded with stated dependencies ... OK
** checking whether the namespace can be unloaded cleanly ... OK
** checking loading without being on the library search path ... OK
* loading checks for arch 'x64'
** checking whether the package can be loaded ... OK
** checking whether the package can be loaded with stated dependencies ... OK
** checking whether the package can be unloaded cleanly ... OK
** checking whether the namespace can be loaded with stated dependencies ... OK
** checking whether the namespace can be unloaded cleanly ... OK
** checking loading without being on the library search path ... OK
* checking dependencies in R code ... OK
* checking S3 generic/method consistency ... OK
* checking replacement functions ... OK
* checking foreign function calls ... OK
* checking R code for possible problems ... OK
* checking Rd files ... OK
* checking Rd metadata ... OK
* checking Rd cross-references ... OK
* checking for missing documentation entries ... OK
* checking for code/documentation mismatches ... OK
* checking Rd \usage sections ... OK
* checking Rd contents ... OK
* checking for unstated dependencies in examples ... OK
* checking contents of 'data' directory ... OK
* checking data for non-ASCII characters ... OK
* checking data for ASCII and uncompressed saves ... OK
* checking R/sysdata.rda ... OK
* checking installed files from 'inst/doc' ... OK
* checking files in 'vignettes' ... OK
* checking examples ...
** running examples for arch 'i386' ... OK
** running examples for arch 'x64' ... OK
* checking for unstated dependencies in 'tests' ... OK
* checking tests ...
** running tests for arch 'i386' ...
  Running 'runTests.R'
 OK
** running tests for arch 'x64' ...
  Running 'runTests.R'
 OK
* checking for unstated dependencies in vignettes ... OK
* checking package vignettes in 'inst/doc' ... OK
* checking running R code from vignettes ... SKIPPED
* checking re-building of vignette outputs ... SKIPPED
* checking PDF version of manual ... OK
* DONE

Status: OK

install for i386

* installing *source* package 'miRBaseConverter' ...
** R
** data
*** moving datasets to lazyload DB
** inst
** preparing package for lazy loading
** help
*** installing help indices
** building package indices
** installing vignettes
** testing if installed package can be loaded

install for x64

* installing *source* package 'miRBaseConverter' ...
** testing if installed package can be loaded
* MD5 sums
packaged installation of 'miRBaseConverter' as miRBaseConverter_0.99.12.zip
* DONE (miRBaseConverter)

name	user	system	elapsed
checkMiRNAAlive	2.79	0.06	2.86
checkMiRNAFamliy	2.89	0.01	2.90
checkMiRNAVersion	0.06	0.00	0.06
getAllMiRNAs	0.27	0.00	0.27
getAllSpecies	0	0	0
getAllVersionInfo	0	0	0
getMiRNAHistory	1.09	0.00	1.09
getMiRNASequence	3.47	0.02	3.48
getMiRNATable	0	0	0
goTo_miRBase	3.16	0.05	3.24
goTo_miRNAFamily	1.10	0.03	1.16
miRNATest	0	0	0
miRNAVersionConvert	3.61	0.01	3.62
miRNA_AccessionToName	1.41	0.00	1.41
miRNA_MatureToPrecursor	0.16	0.00	0.15
miRNA_NameToAccession	2.59	0.02	2.61
miRNA_PrecursorToMature	0.08	0.00	0.08

name	user	system	elapsed
checkMiRNAAlive	3.83	0.03	3.85
checkMiRNAFamliy	3.31	0.01	3.33
checkMiRNAVersion	0.12	0.00	0.12
getAllMiRNAs	0.18	0.00	0.18
getAllSpecies	0	0	0
getAllVersionInfo	0.01	0.00	0.01
getMiRNAHistory	1.28	0.00	1.28
getMiRNASequence	4.28	0.00	4.28
getMiRNATable	0	0	0
goTo_miRBase	3.91	0.10	4.00
goTo_miRNAFamily	1.45	0.05	1.50
miRNATest	0	0	0
miRNAVersionConvert	4.5	0.0	4.5
miRNA_AccessionToName	1.55	0.00	1.55
miRNA_MatureToPrecursor	0.16	0.01	0.17
miRNA_NameToAccession	3.26	0.00	3.27
miRNA_PrecursorToMature	0.28	0.00	0.28