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BioC 3.6: BUILD BIN report for diffuStats on veracruz1

This page was generated on 2017-08-16 13:50:45 -0400 (Wed, 16 Aug 2017).

Package 354/1410HostnameOS / ArchINSTALLBUILDCHECKBUILD BIN
diffuStats 0.99.12
Sergio Picart-Armada
Snapshot Date: 2017-08-15 17:18:21 -0400 (Tue, 15 Aug 2017)
URL: https://hedgehog.fhcrc.org/bioconductor/trunk/madman/Rpacks/diffuStats
Last Changed Rev: 131321 / Revision: 131943
Last Changed Date: 2017-07-18 10:19:34 -0400 (Tue, 18 Jul 2017)
malbec1 Linux (Ubuntu 16.04.1 LTS) / x86_64  NotNeeded  OK  OK UNNEEDED, same version exists in internal repository
tokay1 Windows Server 2012 R2 Standard / x64  NotNeeded  OK  OK  OK UNNEEDED, same version exists in internal repository
veracruz1 OS X 10.11.6 El Capitan / x86_64  NotNeeded  OK  OK [ OK ]UNNEEDED, same version exists in internal repository

Summary

Package: diffuStats
Version: 0.99.12
Command: rm -rf diffuStats.buildbin-libdir && mkdir diffuStats.buildbin-libdir && /Users/biocbuild/BBS/utils/build-universal.sh diffuStats_0.99.12.tar.gz /Library/Frameworks/R.framework/Versions/Current/Resources/bin/R diffuStats.buildbin-libdir
StartedAt: 2017-08-16 10:11:26 -0400 (Wed, 16 Aug 2017)
EndedAt: 2017-08-16 10:11:49 -0400 (Wed, 16 Aug 2017)
EllapsedTime: 23.1 seconds
RetCode: 0
Status:  OK 
PackageFile: diffuStats_0.99.12.tgz
PackageFileSize: 807.9 KiB

Command output

##############################################################################
##############################################################################
###
### Running command:
###
###   rm -rf diffuStats.buildbin-libdir && mkdir diffuStats.buildbin-libdir && /Users/biocbuild/BBS/utils/build-universal.sh diffuStats_0.99.12.tar.gz /Library/Frameworks/R.framework/Versions/Current/Resources/bin/R diffuStats.buildbin-libdir
###
##############################################################################
##############################################################################


>>>>>>> 
>>>>>>> INSTALLATION WITH 'R CMD INSTALL --preclean --no-multiarch --library=diffuStats.buildbin-libdir diffuStats_0.99.12.tar.gz'
>>>>>>> 

* installing *source* package ‘diffuStats’ ...
** libs
clang++ -std=gnu++11 -I/Library/Frameworks/R.framework/Resources/include -DNDEBUG  -I"/Library/Frameworks/R.framework/Versions/3.4/Resources/library/Rcpp/include" -I"/Library/Frameworks/R.framework/Versions/3.4/Resources/library/RcppArmadillo/include" -I"/Library/Frameworks/R.framework/Versions/3.4/Resources/library/RcppParallel/include" -I/usr/local/include   -fPIC  -Wall -g -O2 -c RcppExports.cpp -o RcppExports.o
clang++ -std=gnu++11 -I/Library/Frameworks/R.framework/Resources/include -DNDEBUG  -I"/Library/Frameworks/R.framework/Versions/3.4/Resources/library/Rcpp/include" -I"/Library/Frameworks/R.framework/Versions/3.4/Resources/library/RcppArmadillo/include" -I"/Library/Frameworks/R.framework/Versions/3.4/Resources/library/RcppParallel/include" -I/usr/local/include   -fPIC  -Wall -g -O2 -c diffuse_parallel.cpp -o diffuse_parallel.o
clang -I/Library/Frameworks/R.framework/Resources/include -DNDEBUG  -I"/Library/Frameworks/R.framework/Versions/3.4/Resources/library/Rcpp/include" -I"/Library/Frameworks/R.framework/Versions/3.4/Resources/library/RcppArmadillo/include" -I"/Library/Frameworks/R.framework/Versions/3.4/Resources/library/RcppParallel/include" -I/usr/local/include   -fPIC  -Wall -g -O2  -c init.c -o init.o
clang++ -std=gnu++11 -dynamiclib -Wl,-headerpad_max_install_names -undefined dynamic_lookup -single_module -multiply_defined suppress -L/Library/Frameworks/R.framework/Resources/lib -L/usr/local/lib -o diffuStats.so RcppExports.o diffuse_parallel.o init.o -F/Library/Frameworks/R.framework/.. -framework R -Wl,-framework -Wl,CoreFoundation
installing to /Users/biocbuild/bbs-3.6-bioc/meat/diffuStats.buildbin-libdir/diffuStats/libs
** R
** data
*** moving datasets to lazyload DB
** inst
** preparing package for lazy loading
** help
*** installing help indices
** building package indices
** installing vignettes
** testing if installed package can be loaded
* DONE (diffuStats)


>>>>>>> 
>>>>>>> FIXING LINKS FOR diffuStats.buildbin-libdir/diffuStats/libs//diffuStats.so
>>>>>>> 

install_name_tool -change "/usr/local/lib/libgcc_s.1.dylib" "/Library/Frameworks/R.framework/Versions/3.4/Resources/lib/libgcc_s.1.dylib" "diffuStats.buildbin-libdir/diffuStats/libs//diffuStats.so"
install_name_tool -change "/usr/local/lib/libgfortran.3.dylib" "/Library/Frameworks/R.framework/Versions/3.4/Resources/lib/libgfortran.3.dylib" "diffuStats.buildbin-libdir/diffuStats/libs//diffuStats.so"
install_name_tool -change "/usr/local/lib/libreadline.5.2.dylib" "/Library/Frameworks/R.framework/Versions/3.4/Resources/lib/libreadline.5.2.dylib" "diffuStats.buildbin-libdir/diffuStats/libs//diffuStats.so"
install_name_tool -change "/usr/local/lib/libreadline.dylib" "/Library/Frameworks/R.framework/Versions/3.4/Resources/lib/libreadline.dylib" "diffuStats.buildbin-libdir/diffuStats/libs//diffuStats.so"
install_name_tool -change "/usr/local/lib/libquadmath.0.dylib" "/Library/Frameworks/R.framework/Versions/3.4/Resources/lib/libquadmath.0.dylib" "diffuStats.buildbin-libdir/diffuStats/libs//diffuStats.so"