cellbaseR 1.1.1
Mohammed OE Abdallah
| Snapshot Date: 2017-08-15 17:18:21 -0400 (Tue, 15 Aug 2017) | | URL: https://hedgehog.fhcrc.org/bioconductor/trunk/madman/Rpacks/cellbaseR | | Last Changed Rev: 129266 / Revision: 131943 | | Last Changed Date: 2017-04-28 17:17:39 -0400 (Fri, 28 Apr 2017) |
| malbec1 | Linux (Ubuntu 16.04.1 LTS) / x86_64 | NotNeeded | ERROR | skipped | | |
| tokay1 | Windows Server 2012 R2 Standard / x64 | NotNeeded | [ ERROR ] | skipped | skipped | |
| veracruz1 | OS X 10.11.6 El Capitan / x86_64 | NotNeeded | OK | WARNINGS | OK |  |
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### Running command:
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### chmod a+r cellbaseR -R && C:\Users\biocbuild\bbs-3.6-bioc\R\bin\R.exe CMD build --keep-empty-dirs --no-resave-data cellbaseR
###
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* checking for file 'cellbaseR/DESCRIPTION' ... OK
* preparing 'cellbaseR':
* checking DESCRIPTION meta-information ... OK
* installing the package to build vignettes
* creating vignettes ...Warning: running command '"C:/Users/biocbuild/bbs-3.6-bioc/R/bin/x64/Rscript" --vanilla --default-packages= -e "tools::buildVignettes(dir = '.', tangle = TRUE)"' had status 1
ERROR
Warning: 'rbind.pages' is deprecated.
Use 'rbind_pages' instead.
See help("Deprecated")
Warning: 'rbind.pages' is deprecated.
Use 'rbind_pages' instead.
See help("Deprecated")
Warning: 'rbind.pages' is deprecated.
Use 'rbind_pages' instead.
See help("Deprecated")
Warning: 'rbind.pages' is deprecated.
Use 'rbind_pages' instead.
See help("Deprecated")
Warning: 'rbind.pages' is deprecated.
Use 'rbind_pages' instead.
See help("Deprecated")
Warning: 'rbind.pages' is deprecated.
Use 'rbind_pages' instead.
See help("Deprecated")
Warning: 'rbind.pages' is deprecated.
Use 'rbind_pages' instead.
See help("Deprecated")
Warning: 'rbind.pages' is deprecated.
Use 'rbind_pages' instead.
See help("Deprecated")
Warning: 'rbind.pages' is deprecated.
Use 'rbind_pages' instead.
See help("Deprecated")
Warning: 'rbind.pages' is deprecated.
Use 'rbind_pages' instead.
See help("Deprecated")
Warning: 'rbind.pages' is deprecated.
Use 'rbind_pages' instead.
See help("Deprecated")
Warning: 'rbind.pages' is deprecated.
Use 'rbind_pages' instead.
See help("Deprecated")
Warning: 'rbind.pages' is deprecated.
Use 'rbind_pages' instead.
See help("Deprecated")
Warning: 'rbind.pages' is deprecated.
Use 'rbind_pages' instead.
See help("Deprecated")
Warning: 'rbind.pages' is deprecated.
Use 'rbind_pages' instead.
See help("Deprecated")
Warning: 'rbind.pages' is deprecated.
Use 'rbind_pages' instead.
See help("Deprecated")
Warning: 'rbind.pages' is deprecated.
Use 'rbind_pages' instead.
See help("Deprecated")
Warning: 'rbind.pages' is deprecated.
Use 'rbind_pages' instead.
See help("Deprecated")
Loading required package: Gviz
Loading required package: S4Vectors
Loading required package: stats4
Loading required package: BiocGenerics
Loading required package: parallel
Attaching package: 'BiocGenerics'
The following objects are masked from 'package:parallel':
clusterApply, clusterApplyLB, clusterCall, clusterEvalQ,
clusterExport, clusterMap, parApply, parCapply, parLapply,
parLapplyLB, parRapply, parSapply, parSapplyLB
The following objects are masked from 'package:stats':
IQR, mad, sd, var, xtabs
The following objects are masked from 'package:base':
Filter, Find, Map, Position, Reduce, anyDuplicated, append,
as.data.frame, cbind, colMeans, colSums, colnames, do.call,
duplicated, eval, evalq, get, grep, grepl, intersect,
is.unsorted, lapply, lengths, mapply, match, mget, order,
paste, pmax, pmax.int, pmin, pmin.int, rank, rbind, rowMeans,
rowSums, rownames, sapply, setdiff, sort, table, tapply,
union, unique, unsplit, which, which.max, which.min
Attaching package: 'S4Vectors'
The following object is masked from 'package:base':
expand.grid
Loading required package: IRanges
Loading required package: GenomicRanges
Loading required package: GenomeInfoDb
Loading required package: grid
Loading required package: SummarizedExperiment
Loading required package: Biobase
Welcome to Bioconductor
Vignettes contain introductory material; view with
'browseVignettes()'. To cite Bioconductor, see
'citation("Biobase")', and for packages 'citation("pkgname")'.
Loading required package: DelayedArray
Loading required package: matrixStats
Attaching package: 'matrixStats'
The following objects are masked from 'package:Biobase':
anyMissing, rowMedians
Attaching package: 'DelayedArray'
The following objects are masked from 'package:matrixStats':
colMaxs, colMins, colRanges, rowMaxs, rowMins, rowRanges
The following object is masked from 'package:base':
apply
Loading required package: Rsamtools
Loading required package: Biostrings
Loading required package: XVector
Attaching package: 'Biostrings'
The following object is masked from 'package:DelayedArray':
type
The following object is masked from 'package:base':
strsplit
Attaching package: 'VariantAnnotation'
The following object is masked from 'package:base':
tabulate
Quitting from lines 153-163 (cellbaseR.Rmd)
Error: processing vignette 'cellbaseR.Rmd' failed with diagnostics:
BiocParallel errors
element index: 1
first error: lexical error: invalid char in json text.
<html><body><h1>504 Gateway Tim
(right here) ------^
Execution halted