affylmGUI 1.51.0 Yifang Hu , Gordon Smyth , Keith Satterley
Snapshot Date: 2017-08-15 17:18:21 -0400 (Tue, 15 Aug 2017) | URL: https://hedgehog.fhcrc.org/bioconductor/trunk/madman/Rpacks/affylmGUI | Last Changed Rev: 129129 / Revision: 131943 | Last Changed Date: 2017-04-24 15:50:57 -0400 (Mon, 24 Apr 2017) |
| malbec1 | Linux (Ubuntu 16.04.1 LTS) / x86_64 | OK | OK | OK | |  |
tokay1 | Windows Server 2012 R2 Standard / x64 | OK | OK | OK | [ OK ] |  |
veracruz1 | OS X 10.11.6 El Capitan / x86_64 | OK | OK | OK | OK |  |
##############################################################################
##############################################################################
###
### Running command:
###
### cd affylmGUI.buildbin-libdir/affylmGUI && zip -r ../../affylmGUI_1.51.0.zip . & cd ../..
###
##############################################################################
##############################################################################
adding: CITATION (332 bytes security) (deflated 53%)
adding: DESCRIPTION (332 bytes security) (deflated 43%)
adding: doc/ (372 bytes security) (stored 0%)
adding: doc/about.html (332 bytes security) (deflated 57%)
adding: doc/about_files/ (372 bytes security) (stored 0%)
adding: doc/about_files/BioinfBanner.jpg (332 bytes security) (deflated 0%)
adding: doc/about_files/HeatDiagram.png (332 bytes security) (deflated 8%)
adding: doc/about_files/MainWinAfterContrastsComputed.png (332 bytes security) (deflated 8%)
adding: doc/about_files/MAplotPres10vsAbs10.png (332 bytes security) (deflated 6%)
adding: doc/about_files/Toptable.png (332 bytes security) (deflated 6%)
adding: doc/about_files/wehilogo.gif (332 bytes security) (deflated 1%)
adding: doc/affylmGUI.pdf (332 bytes security) (deflated 6%)
adding: doc/affylmGUI.R (332 bytes security) (deflated 70%)
adding: doc/affylmGUI.Rnw (332 bytes security) (deflated 51%)
adding: doc/changelog.txt (332 bytes security) (deflated 60%)
adding: doc/CustMenu.html (332 bytes security) (deflated 52%)
adding: doc/estrogen/ (372 bytes security) (stored 0%)
adding: doc/estrogen/AdvancedButtonShowsContrastsMatrix.png (332 bytes security) (deflated 11%)
adding: doc/estrogen/affylmGUImain.png (332 bytes security) (deflated 15%)
adding: doc/estrogen/ChooseContrast.png (332 bytes security) (deflated 6%)
adding: doc/estrogen/ChooseContrast2.png (332 bytes security) (deflated 6%)
adding: doc/estrogen/ChooseContrastsParameterization.png (332 bytes security) (deflated 9%)
adding: doc/estrogen/ChooseNormalizationMethod.png (332 bytes security) (deflated 6%)
adding: doc/estrogen/ChooseProbSetForDensity.png (332 bytes security) (deflated 7%)
adding: doc/estrogen/ChooseSlide.png (332 bytes security) (deflated 5%)
adding: doc/estrogen/ComputeContrastsSelected.png (332 bytes security) (deflated 9%)
adding: doc/estrogen/ContrastNamesForHeatDiagram.png (332 bytes security) (deflated 7%)
adding: doc/estrogen/ContrastsParameterizationName.png (332 bytes security) (deflated 5%)
adding: doc/estrogen/DataSetName.png (332 bytes security) (deflated 7%)
adding: doc/estrogen/DefiningContrasts.png (332 bytes security) (deflated 7%)
adding: doc/estrogen/DEGeneLabelOptions.png (332 bytes security) (deflated 11%)
adding: doc/estrogen/DensityPlot.png (332 bytes security) (deflated 15%)
adding: doc/estrogen/DensityPlotSelected.png (332 bytes security) (deflated 10%)
adding: doc/estrogen/estrogen.html (332 bytes security) (deflated 68%)
adding: doc/estrogen/estrogenDir.png (332 bytes security) (deflated 5%)
adding: doc/estrogen/ExportingExpressionValues.png (332 bytes security) (deflated 2%)
adding: doc/estrogen/ExportNormalizedExpressionValuesSelected.png (332 bytes security) (deflated 12%)
adding: doc/estrogen/ExprsInExcel.png (332 bytes security) (deflated 5%)
adding: doc/estrogen/FilenameInTitlebar.png (332 bytes security) (deflated 7%)
adding: doc/estrogen/HeatDiagram.png (332 bytes security) (deflated 8%)
adding: doc/estrogen/HeatDiagramCutoffs.png (332 bytes security) (deflated 7%)
adding: doc/estrogen/heatdiagramPlotTitle.png (332 bytes security) (deflated 6%)
adding: doc/estrogen/HeatDiagramSelected.png (332 bytes security) (deflated 5%)
adding: doc/estrogen/ImageArrayPlotSelected.png (332 bytes security) (deflated 9%)
adding: doc/estrogen/ImagePlotInR.png (332 bytes security) (deflated 2%)
adding: doc/estrogen/ImageQualityPlotInR.png (332 bytes security) (deflated 3%)
adding: doc/estrogen/ImageQualityPlotSelected.png (332 bytes security) (deflated 9%)
adding: doc/estrogen/LinearModelFitSelected.png (332 bytes security) (deflated 11%)
adding: doc/estrogen/LogOddsPlot.png (332 bytes security) (deflated 7%)
adding: doc/estrogen/LogOddsSelected.png (332 bytes security) (deflated 5%)
adding: doc/estrogen/MainWinAfterContrastsComputed.png (332 bytes security) (deflated 8%)
adding: doc/estrogen/mainWinAfterNormalization.png (332 bytes security) (deflated 13%)
adding: doc/estrogen/MainWindowArraysLoaded.png (332 bytes security) (deflated 13%)
adding: doc/estrogen/MainWinLinearModelFitComputed.png (332 bytes security) (deflated 10%)
adding: doc/estrogen/MAplotContrastSelected.png (332 bytes security) (deflated 6%)
adding: doc/estrogen/MAPlotLabels.png (332 bytes security) (deflated 8%)
adding: doc/estrogen/MAplotPres10vsAbs10.png (332 bytes security) (deflated 6%)
adding: doc/estrogen/NormalizedIntensityBoxPlot.png (332 bytes security) (deflated 25%)
adding: doc/estrogen/NormalizedIntensityBoxPlotSelected.png (332 bytes security) (deflated 9%)
adding: doc/estrogen/NormalizeSelected.png (332 bytes security) (deflated 12%)
adding: doc/estrogen/OpeningEstrogenTargets.png (332 bytes security) (deflated 2%)
adding: doc/estrogen/OpenTargetsFileDialog.png (332 bytes security) (deflated 10%)
adding: doc/estrogen/PlotLabelsForDensity.png (332 bytes security) (deflated 8%)
adding: doc/estrogen/PlotTitleAndAxisLabels.png (332 bytes security) (deflated 9%)
adding: doc/estrogen/qqtPlot.png (332 bytes security) (deflated 12%)
adding: doc/estrogen/qqtSelected.png (332 bytes security) (deflated 5%)
adding: doc/estrogen/RawIntensityBoxPlot.png (332 bytes security) (deflated 26%)
adding: doc/estrogen/RawIntensityBoxPlotSelected.png (332 bytes security) (deflated 9%)
adding: doc/estrogen/RawIntensityBoxPlotTitle.png (332 bytes security) (deflated 6%)
adding: doc/estrogen/Rgui.png (332 bytes security) (deflated 6%)
adding: doc/estrogen/RNATargets.png (332 bytes security) (deflated 4%)
adding: doc/estrogen/RNATargetsSelected.png (332 bytes security) (deflated 13%)
adding: doc/estrogen/RvsTkrplot.png (332 bytes security) (deflated 3%)
adding: doc/estrogen/SaveAsSelected.png (332 bytes security) (deflated 6%)
adding: doc/estrogen/SavingEstrogen.png (332 bytes security) (deflated 2%)
adding: doc/estrogen/SelectingContrastsForVenn.png (332 bytes security) (deflated 6%)
adding: doc/estrogen/SetNamesForVenn.png (332 bytes security) (deflated 8%)
adding: doc/estrogen/TargetsFileSelected.png (332 bytes security) (deflated 9%)
adding: doc/estrogen/Toptable.png (332 bytes security) (deflated 6%)
adding: doc/estrogen/ToptableOptions.png (332 bytes security) (deflated 10%)
adding: doc/estrogen/ToptableSelected.png (332 bytes security) (deflated 8%)
adding: doc/estrogen/UpDownOrBothForVenn.png (332 bytes security) (deflated 8%)
adding: doc/estrogen/VennDiagram.png (332 bytes security) (deflated 13%)
adding: doc/estrogen/VennDiagramSelected.png (332 bytes security) (deflated 6%)
adding: doc/extract.pdf (332 bytes security) (deflated 7%)
adding: doc/extract.Rnw (332 bytes security) (deflated 66%)
adding: doc/index.html (332 bytes security) (deflated 51%)
adding: doc/input/ (372 bytes security) (stored 0%)
adding: doc/input/EstrogenTargets.png (332 bytes security) (deflated 2%)
adding: doc/input/InputFiles.html (332 bytes security) (deflated 59%)
adding: doc/LifeCycle/ (372 bytes security) (stored 0%)
adding: doc/LifeCycle/ChooseContrast.png (332 bytes security) (deflated 5%)
adding: doc/LifeCycle/ChooseContrastsParameterization.png (332 bytes security) (deflated 9%)
adding: doc/LifeCycle/chooseDir.png (332 bytes security) (deflated 7%)
adding: doc/LifeCycle/ComputeContrastsSelected.png (332 bytes security) (deflated 15%)
adding: doc/LifeCycle/ComputeLinearModelFitSelected.png (332 bytes security) (deflated 19%)
adding: doc/LifeCycle/ContrastsDefined.png (332 bytes security) (deflated 8%)
adding: doc/LifeCycle/ContrastsName.png (332 bytes security) (deflated 5%)
adding: doc/LifeCycle/DataSetName.png (332 bytes security) (deflated 6%)
adding: doc/LifeCycle/DEgeneLabelOptions.png (332 bytes security) (deflated 11%)
adding: doc/LifeCycle/ExportHTMLselected.png (332 bytes security) (deflated 12%)
adding: doc/LifeCycle/HTMLcomponents.png (332 bytes security) (deflated 10%)
adding: doc/LifeCycle/HTMLfilename.png (332 bytes security) (deflated 2%)
adding: doc/LifeCycle/LifeCycle.html (332 bytes security) (deflated 61%)
adding: doc/LifeCycle/MAcontrastPlot.png (332 bytes security) (deflated 5%)
adding: doc/LifeCycle/MAcontrastPlotLabels.png (332 bytes security) (deflated 8%)
adding: doc/LifeCycle/mainWin.png (332 bytes security) (deflated 24%)
adding: doc/LifeCycle/MalariaLifeCycle.html (332 bytes security) (deflated 89%)
adding: doc/LifeCycle/MalariaLifeCycle_files/ (372 bytes security) (stored 0%)
adding: doc/LifeCycle/MalariaLifeCycle_files/contrastMAplot.1.png (332 bytes security) (deflated 9%)
adding: doc/LifeCycle/MalariaLifeCycle_files/contrastMAplot.2.png (332 bytes security) (deflated 6%)
adding: doc/LifeCycle/MalariaLifeCycle_files/contrastMAplot.3.png (332 bytes security) (deflated 6%)
adding: doc/LifeCycle/MalariaLifeCycle_files/contrastMAplot.4.png (332 bytes security) (deflated 8%)
adding: doc/LifeCycle/MalariaLifeCycle_files/contrastMAplot.5.png (332 bytes security) (deflated 5%)
adding: doc/LifeCycle/MalariaLifeCycle_files/contrastMAplot.6.png (332 bytes security) (deflated 6%)
adding: doc/LifeCycle/MalariaLifeCycle_files/NormalizedIntensityBoxPlot.png (332 bytes security) (deflated 20%)
adding: doc/LifeCycle/MalariaLifeCycle_files/RawIntensityBoxPlot.png (332 bytes security) (deflated 35%)
adding: doc/LifeCycle/malariaTargetsInExcel.png (332 bytes security) (deflated 3%)
adding: doc/LifeCycle/MAplotContrast.png (332 bytes security) (deflated 11%)
adding: doc/LifeCycle/NewSelected.png (332 bytes security) (deflated 20%)
adding: doc/LifeCycle/NormalizeSelected.png (332 bytes security) (deflated 21%)
adding: doc/LifeCycle/PNGparams.png (332 bytes security) (deflated 11%)
adding: doc/LifeCycle/R2HTML.css (332 bytes security) (deflated 78%)
adding: doc/LifeCycle/R2HTMLlogo.gif (332 bytes security) (stored 0%)
adding: doc/LifeCycle/R2HTMLlogo.png (332 bytes security) (deflated 16%)
adding: doc/LifeCycle/RMAselected.png (332 bytes security) (deflated 6%)
adding: doc/LifeCycle/TargetsFileSelected.png (332 bytes security) (deflated 9%)
adding: doc/LifeCycle/ToptableMzvsLS.png (332 bytes security) (deflated 10%)
adding: doc/LifeCycle/ToptableOptions.png (332 bytes security) (deflated 10%)
adding: doc/LifeCycle/ToptableSelected.png (332 bytes security) (deflated 14%)
adding: doc/style.css (332 bytes security) (deflated 42%)
adding: doc/windowsFocus.html (332 bytes security) (deflated 60%)
adding: etc/ (372 bytes security) (stored 0%)
adding: etc/affylmGUI-menus.txt (332 bytes security) (deflated 84%)
adding: etc/recent-files.txt (332 bytes security) (stored 0%)
adding: help/ (372 bytes security) (stored 0%)
adding: help/affylmGUI.rdb (332 bytes security) (deflated 0%)
adding: help/affylmGUI.rdx (332 bytes security) (stored 0%)
adding: help/aliases.rds (332 bytes security) (stored 0%)
adding: help/AnIndex (332 bytes security) (deflated 71%)
adding: help/paths.rds (332 bytes security) (stored 0%)
adding: html/ (372 bytes security) (stored 0%)
adding: html/00Index.html (332 bytes security) (deflated 90%)
adding: html/R.css (332 bytes security) (deflated 75%)
adding: INDEX (332 bytes security) (deflated 38%)
adding: MD5 (332 bytes security) (deflated 57%)
adding: Meta/ (372 bytes security) (stored 0%)
adding: Meta/features.rds (332 bytes security) (stored 0%)
adding: Meta/hsearch.rds (332 bytes security) (stored 0%)
adding: Meta/links.rds (332 bytes security) (stored 0%)
adding: Meta/nsInfo.rds (332 bytes security) (stored 0%)
adding: Meta/package.rds (332 bytes security) (stored 0%)
adding: Meta/Rd.rds (332 bytes security) (stored 0%)
adding: Meta/vignette.rds (332 bytes security) (stored 0%)
adding: NAMESPACE (332 bytes security) (deflated 50%)
adding: R/ (372 bytes security) (stored 0%)
adding: R/affylmGUI (332 bytes security) (deflated 41%)
adding: R/affylmGUI.rdb (332 bytes security) (deflated 1%)
adding: R/affylmGUI.rdx (332 bytes security) (stored 0%)