BioC 3.6: BUILD report for TCGAbiolinksGUI on veracruz1

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### Running command:
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###   /Library/Frameworks/R.framework/Versions/Current/Resources/bin/R CMD build --keep-empty-dirs --no-resave-data TCGAbiolinksGUI
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* checking for file ‘TCGAbiolinksGUI/DESCRIPTION’ ... OK
* preparing ‘TCGAbiolinksGUI’:
* checking DESCRIPTION meta-information ... OK
* installing the package to build vignettes
* creating vignettes ... ERROR
Loading required package: GenomicRanges
Loading required package: stats4
Loading required package: BiocGenerics
Loading required package: parallel

Attaching package: 'BiocGenerics'

The following objects are masked from 'package:parallel':

    clusterApply, clusterApplyLB, clusterCall, clusterEvalQ,
    clusterExport, clusterMap, parApply, parCapply, parLapply,
    parLapplyLB, parRapply, parSapply, parSapplyLB

The following objects are masked from 'package:stats':

    IQR, mad, sd, var, xtabs

The following objects are masked from 'package:base':

    Filter, Find, Map, Position, Reduce, anyDuplicated, append,
    as.data.frame, cbind, colMeans, colSums, colnames, do.call,
    duplicated, eval, evalq, get, grep, grepl, intersect,
    is.unsorted, lapply, lengths, mapply, match, mget, order,
    paste, pmax, pmax.int, pmin, pmin.int, rank, rbind, rowMeans,
    rowSums, rownames, sapply, setdiff, sort, table, tapply,
    union, unique, unsplit, which, which.max, which.min

Loading required package: S4Vectors

Attaching package: 'S4Vectors'

The following object is masked from 'package:base':

    expand.grid

Loading required package: IRanges
Loading required package: GenomeInfoDb
Loading required package: Biobase
Welcome to Bioconductor

    Vignettes contain introductory material; view with
    'browseVignettes()'. To cite Bioconductor, see
    'citation("Biobase")', and for packages 'citation("pkgname")'.

Loading required package: DelayedArray
Loading required package: matrixStats

Attaching package: 'matrixStats'

The following objects are masked from 'package:Biobase':

    anyMissing, rowMedians


Attaching package: 'DelayedArray'

The following objects are masked from 'package:matrixStats':

    colMaxs, colMins, colRanges, rowMaxs, rowMins, rowRanges

The following object is masked from 'package:base':

    apply


Attaching package: 'dplyr'

The following object is masked from 'package:matrixStats':

    count

The following object is masked from 'package:Biobase':

    combine

The following objects are masked from 'package:GenomicRanges':

    intersect, setdiff, union

The following object is masked from 'package:GenomeInfoDb':

    intersect

The following objects are masked from 'package:IRanges':

    collapse, desc, intersect, setdiff, slice, union

The following objects are masked from 'package:S4Vectors':

    first, intersect, rename, setdiff, setequal, union

The following objects are masked from 'package:BiocGenerics':

    combine, intersect, setdiff, union

The following objects are masked from 'package:stats':

    filter, lag

The following objects are masked from 'package:base':

    intersect, setdiff, setequal, union

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o GDCquery: Searching in GDC database
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Genome of reference: hg38
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oo Accessing GDC. This might take a while...
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ooo Project: TCGA-READ
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oo Filtering results
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ooo By barcode
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oo Checking data
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ooo Check if there are duplicated cases
ooo Check if there results for the query
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o Preparing output
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Downloading data for project TCGA-READ
GDCdownload will download: 56.21 KB
Downloading as: nationwidechildrens.org_clinical.TCGA-F5-6702.xml
To get the following information please change the clinical.info argument
=> new_tumor_events: new_tumor_event 
=> drugs: drug 
=> follow_ups: follow_up 
=> radiations: radiation
Adding stage event information
Parsing follow up version: follow_up_v1.0
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o GDCquery: Searching in GDC database
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Genome of reference: hg38
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oo Accessing GDC. This might take a while...
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ooo Project: TCGA-LIHC
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oo Filtering results
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ooo By data.type
ooo By workflow.type
ooo By sample.type
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oo Checking data
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ooo Check if there are duplicated cases
ooo Check if there results for the query
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o Preparing output
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Quitting from lines 203-215 (data.Rmd) 
Error: processing vignette 'data.Rmd' failed with diagnostics:
GDC server down, try to use this package later
Execution halted
BioC 3.6: BUILD report for TCGAbiolinksGUI on veracruz1

Summary

Command output
