BioC 3.6: CHECK report for RTNduals on veracruz1

Package: RTNduals

Version: 1.1.3

Command: /Library/Frameworks/R.framework/Versions/Current/Resources/bin/R CMD check --no-vignettes --timings RTNduals_1.1.3.tar.gz

StartedAt: 2017-08-16 08:07:46 -0400 (Wed, 16 Aug 2017)

EndedAt: 2017-08-16 08:10:41 -0400 (Wed, 16 Aug 2017)

EllapsedTime: 175.2 seconds

RetCode: 0

Status:  OK

CheckDir: RTNduals.Rcheck

Warnings: 0

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### Running command:
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###   /Library/Frameworks/R.framework/Versions/Current/Resources/bin/R CMD check --no-vignettes --timings RTNduals_1.1.3.tar.gz
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* using log directory ‘/Users/biocbuild/bbs-3.6-bioc/meat/RTNduals.Rcheck’
* using R version 3.4.1 (2017-06-30)
* using platform: x86_64-apple-darwin15.6.0 (64-bit)
* using session charset: UTF-8
* using option ‘--no-vignettes’
* checking for file ‘RTNduals/DESCRIPTION’ ... OK
* checking extension type ... Package
* this is package ‘RTNduals’ version ‘1.1.3’
* checking package namespace information ... OK
* checking package dependencies ... OK
* checking if this is a source package ... OK
* checking if there is a namespace ... OK
* checking for hidden files and directories ... OK
* checking for portable file names ... OK
* checking for sufficient/correct file permissions ... OK
* checking whether package ‘RTNduals’ can be installed ... OK
* checking installed package size ... OK
* checking package directory ... OK
* checking ‘build’ directory ... OK
* checking DESCRIPTION meta-information ... OK
* checking top-level files ... OK
* checking for left-over files ... OK
* checking index information ... OK
* checking package subdirectories ... OK
* checking R files for non-ASCII characters ... OK
* checking R files for syntax errors ... OK
* checking whether the package can be loaded ... OK
* checking whether the package can be loaded with stated dependencies ... OK
* checking whether the package can be unloaded cleanly ... OK
* checking whether the namespace can be loaded with stated dependencies ... OK
* checking whether the namespace can be unloaded cleanly ... OK
* checking loading without being on the library search path ... OK
* checking dependencies in R code ... OK
* checking S3 generic/method consistency ... OK
* checking replacement functions ... OK
* checking foreign function calls ... OK
* checking R code for possible problems ... OK
* checking Rd files ... OK
* checking Rd metadata ... OK
* checking Rd cross-references ... OK
* checking for missing documentation entries ... OK
* checking for code/documentation mismatches ... OK
* checking Rd \usage sections ... OK
* checking Rd contents ... OK
* checking for unstated dependencies in examples ... OK
* checking installed files from ‘inst/doc’ ... OK
* checking files in ‘vignettes’ ... OK
* checking examples ... OK
Examples with CPU or elapsed time > 5s
                        user system elapsed
mbrAssociation-methods 8.335  0.311   8.871
mbrDuals-methods       7.072  0.262   7.526
mbrPlotDuals           6.914  0.327   7.430
mbrDpiFilter-methods   5.740  0.254   6.183
mbrBootstrap-methods   4.960  0.255   5.349
mbrPermutation-methods 4.839  0.179   5.153
* checking for unstated dependencies in ‘tests’ ... OK
* checking tests ...
  Running ‘runTests.R’
 OK
* checking for unstated dependencies in vignettes ... OK
* checking package vignettes in ‘inst/doc’ ... OK
* checking running R code from vignettes ... SKIPPED
* checking re-building of vignette outputs ... SKIPPED
* checking PDF version of manual ... OK
* DONE

Status: OK

* installing *source* package ‘RTNduals’ ...
** R
** inst
** preparing package for lazy loading
** help
*** installing help indices
** building package indices
** installing vignettes
** testing if installed package can be loaded
* DONE (RTNduals)

name	user	system	elapsed
mbrAssociation-methods	8.335	0.311	8.871
mbrBootstrap-methods	4.960	0.255	5.349
mbrDpiFilter-methods	5.740	0.254	6.183
mbrDuals-methods	7.072	0.262	7.526
mbrGet-methods	2.335	0.073	2.466
mbrPermutation-methods	4.839	0.179	5.153
mbrPlotDuals	6.914	0.327	7.430
mbrPreprocess-methods	2.337	0.086	2.496
tni2mbrPreprocess-methods	0.838	0.027	0.899