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BioC 3.6: INSTALL report for InteractionSet on tokay1

This page was generated on 2017-08-16 13:36:14 -0400 (Wed, 16 Aug 2017).

Package 683/1410HostnameOS / ArchINSTALLBUILDCHECKBUILD BIN
InteractionSet 1.5.3
Aaron Lun
Snapshot Date: 2017-08-15 17:18:21 -0400 (Tue, 15 Aug 2017)
URL: https://hedgehog.fhcrc.org/bioconductor/trunk/madman/Rpacks/InteractionSet
Last Changed Rev: 130491 / Revision: 131943
Last Changed Date: 2017-06-18 10:58:54 -0400 (Sun, 18 Jun 2017)
malbec1 Linux (Ubuntu 16.04.1 LTS) / x86_64  OK  OK  OK UNNEEDED, same version exists in internal repository
tokay1 Windows Server 2012 R2 Standard / x64 [ OK ] OK  OK  OK UNNEEDED, same version exists in internal repository
veracruz1 OS X 10.11.6 El Capitan / x86_64  OK  OK  OK  OK UNNEEDED, same version exists in internal repository

Summary

Package: InteractionSet
Version: 1.5.3
Command: rm -rf InteractionSet.buildbin-libdir && mkdir InteractionSet.buildbin-libdir && C:\cygwin\bin\curl.exe -O https://malbec1.bioconductor.org/BBS/3.6/bioc/src/contrib/InteractionSet_1.5.3.tar.gz && C:\Users\biocbuild\bbs-3.6-bioc\R\bin\R.exe CMD INSTALL --build --library=InteractionSet.buildbin-libdir --merge-multiarch InteractionSet_1.5.3.tar.gz && C:\Users\biocbuild\bbs-3.6-bioc\R\bin\R.exe CMD INSTALL InteractionSet_1.5.3.zip && rm InteractionSet_1.5.3.tar.gz InteractionSet_1.5.3.zip
StartedAt: 2017-08-15 18:23:59 -0400 (Tue, 15 Aug 2017)
EndedAt: 2017-08-15 18:24:53 -0400 (Tue, 15 Aug 2017)
EllapsedTime: 54.5 seconds
RetCode: 0
Status:  OK  

Command output

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###
### Running command:
###
###   rm -rf InteractionSet.buildbin-libdir && mkdir InteractionSet.buildbin-libdir  && C:\cygwin\bin\curl.exe -O https://malbec1.bioconductor.org/BBS/3.6/bioc/src/contrib/InteractionSet_1.5.3.tar.gz && C:\Users\biocbuild\bbs-3.6-bioc\R\bin\R.exe CMD INSTALL --build --library=InteractionSet.buildbin-libdir --merge-multiarch InteractionSet_1.5.3.tar.gz && C:\Users\biocbuild\bbs-3.6-bioc\R\bin\R.exe CMD INSTALL InteractionSet_1.5.3.zip  && rm InteractionSet_1.5.3.tar.gz InteractionSet_1.5.3.zip
###
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  % Total    % Received % Xferd  Average Speed   Time    Time     Time  Current
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  0     0    0     0    0     0      0      0 --:--:-- --:--:-- --:--:--     0
  0 77138    0     0    0     0      0      0 --:--:-- --:--:-- --:--:--     0
100 77138  100 77138    0     0   477k      0 --:--:-- --:--:-- --:--:--  486k

install for i386

* installing *source* package 'InteractionSet' ...
** libs
C:/Rtools/mingw_32/bin/g++  -I"C:/Users/BIOCBU˜1/BBS-3˜1.6-B/R/include" -DNDEBUG     -I"C:/local323/include"     -O2 -Wall  -mtune=core2 -c box_bounds.cpp -o box_bounds.o
C:/Rtools/mingw_32/bin/g++  -I"C:/Users/BIOCBU˜1/BBS-3˜1.6-B/R/include" -DNDEBUG     -I"C:/local323/include"     -O2 -Wall  -mtune=core2 -c init.cpp -o init.o
C:/Rtools/mingw_32/bin/g++  -I"C:/Users/BIOCBU˜1/BBS-3˜1.6-B/R/include" -DNDEBUG     -I"C:/local323/include"     -O2 -Wall  -mtune=core2 -c overlaps.cpp -o overlaps.o
C:/Rtools/mingw_32/bin/g++ -shared -s -static-libgcc -o InteractionSet.dll tmp.def box_bounds.o init.o overlaps.o -LC:/local323/lib/i386 -LC:/local323/lib -LC:/Users/BIOCBU˜1/BBS-3˜1.6-B/R/bin/i386 -lR
installing to C:/Users/biocbuild/bbs-3.6-bioc/meat/InteractionSet.buildbin-libdir/InteractionSet/libs/i386
** R
** inst
** preparing package for lazy loading
** help
*** installing help indices
** building package indices
** installing vignettes
** testing if installed package can be loaded

install for x64

* installing *source* package 'InteractionSet' ...
** libs
C:/Rtools/mingw_64/bin/g++  -I"C:/Users/BIOCBU˜1/BBS-3˜1.6-B/R/include" -DNDEBUG     -I"C:/local323/include"     -O2 -Wall  -mtune=core2 -c box_bounds.cpp -o box_bounds.o
C:/Rtools/mingw_64/bin/g++  -I"C:/Users/BIOCBU˜1/BBS-3˜1.6-B/R/include" -DNDEBUG     -I"C:/local323/include"     -O2 -Wall  -mtune=core2 -c init.cpp -o init.o
C:/Rtools/mingw_64/bin/g++  -I"C:/Users/BIOCBU˜1/BBS-3˜1.6-B/R/include" -DNDEBUG     -I"C:/local323/include"     -O2 -Wall  -mtune=core2 -c overlaps.cpp -o overlaps.o
C:/Rtools/mingw_64/bin/g++ -shared -s -static-libgcc -o InteractionSet.dll tmp.def box_bounds.o init.o overlaps.o -LC:/local323/lib/x64 -LC:/local323/lib -LC:/Users/BIOCBU˜1/BBS-3˜1.6-B/R/bin/x64 -lR
installing to C:/Users/biocbuild/bbs-3.6-bioc/meat/InteractionSet.buildbin-libdir/InteractionSet/libs/x64
** testing if installed package can be loaded
* MD5 sums
packaged installation of 'InteractionSet' as InteractionSet_1.5.3.zip
* DONE (InteractionSet)
* installing to library 'C:/Users/biocbuild/bbs-3.6-bioc/R/library'
package 'InteractionSet' successfully unpacked and MD5 sums checked