GWASTools 1.23.0
Stephanie M. Gogarten , Adrienne Stilp
| Snapshot Date: 2017-08-15 17:18:21 -0400 (Tue, 15 Aug 2017) | | URL: https://hedgehog.fhcrc.org/bioconductor/trunk/madman/Rpacks/GWASTools | | Last Changed Rev: 131790 / Revision: 131943 | | Last Changed Date: 2017-08-07 17:03:28 -0400 (Mon, 07 Aug 2017) |
| malbec1 | Linux (Ubuntu 16.04.1 LTS) / x86_64 | OK | OK | OK | |  |
| tokay1 | Windows Server 2012 R2 Standard / x64 | OK | OK | ERROR | [ OK ] | |
| veracruz1 | OS X 10.11.6 El Capitan / x86_64 | OK | OK | OK | OK | |
##############################################################################
##############################################################################
###
### Running command:
###
### cd GWASTools.buildbin-libdir/GWASTools && zip -r ../../GWASTools_1.23.0.zip . & cd ../..
###
##############################################################################
##############################################################################
adding: CITATION (332 bytes security) (deflated 29%)
adding: data/ (372 bytes security) (stored 0%)
adding: data/Rdata.rdb (332 bytes security) (deflated 22%)
adding: data/Rdata.rds (332 bytes security) (stored 0%)
adding: data/Rdata.rdx (332 bytes security) (stored 0%)
adding: DESCRIPTION (332 bytes security) (deflated 57%)
adding: doc/ (372 bytes security) (stored 0%)
adding: doc/Affymetrix.pdf (332 bytes security) (deflated 8%)
adding: doc/Affymetrix.R (332 bytes security) (deflated 76%)
adding: doc/Affymetrix.Rnw (332 bytes security) (deflated 69%)
adding: doc/DataCleaning.pdf (332 bytes security) (deflated 23%)
adding: doc/DataCleaning.R (332 bytes security) (deflated 78%)
adding: doc/DataCleaning.Rnw (332 bytes security) (deflated 71%)
adding: doc/Formats.pdf (332 bytes security) (deflated 9%)
adding: doc/Formats.R (332 bytes security) (deflated 77%)
adding: doc/Formats.Rnw (332 bytes security) (deflated 67%)
adding: doc/index.html (332 bytes security) (deflated 72%)
adding: help/ (372 bytes security) (stored 0%)
adding: help/aliases.rds (332 bytes security) (stored 0%)
adding: help/AnIndex (332 bytes security) (deflated 88%)
adding: help/GWASTools.rdb (332 bytes security) (deflated 1%)
adding: help/GWASTools.rdx (332 bytes security) (stored 0%)
adding: help/paths.rds (332 bytes security) (stored 0%)
adding: html/ (372 bytes security) (stored 0%)
adding: html/00Index.html (332 bytes security) (deflated 91%)
adding: html/R.css (332 bytes security) (deflated 75%)
adding: INDEX (332 bytes security) (deflated 66%)
adding: MD5 (332 bytes security) (deflated 52%)
adding: Meta/ (372 bytes security) (stored 0%)
adding: Meta/data.rds (332 bytes security) (stored 0%)
adding: Meta/features.rds (332 bytes security) (stored 0%)
adding: Meta/hsearch.rds (332 bytes security) (deflated 0%)
adding: Meta/links.rds (332 bytes security) (stored 0%)
adding: Meta/nsInfo.rds (332 bytes security) (stored 0%)
adding: Meta/package.rds (332 bytes security) (stored 0%)
adding: Meta/Rd.rds (332 bytes security) (stored 0%)
adding: Meta/vignette.rds (332 bytes security) (stored 0%)
adding: NAMESPACE (332 bytes security) (deflated 68%)
adding: NEWS.Rd (332 bytes security) (deflated 73%)
adding: R/ (372 bytes security) (stored 0%)
adding: R/GWASTools (332 bytes security) (deflated 41%)
adding: R/GWASTools.rdb (332 bytes security) (deflated 23%)
adding: R/GWASTools.rdx (332 bytes security) (deflated 1%)
adding: unitTests/ (372 bytes security) (stored 0%)
adding: unitTests/alleleFrequency_test.R (332 bytes security) (deflated 78%)
adding: unitTests/allequal_test.R (332 bytes security) (deflated 41%)
adding: unitTests/anomDetectBAF_test.R (332 bytes security) (deflated 73%)
adding: unitTests/apartSnpSelection_test.R (332 bytes security) (deflated 57%)
adding: unitTests/assocCoxPH_test.R (332 bytes security) (deflated 73%)
adding: unitTests/assocRegression_test.R (332 bytes security) (deflated 84%)
adding: unitTests/BAFfromClusterMeans_test.R (332 bytes security) (deflated 42%)
adding: unitTests/BAFfromGenotypes_test.R (332 bytes security) (deflated 69%)
adding: unitTests/batchChisqTest_test.R (332 bytes security) (deflated 84%)
adding: unitTests/batchFisherTest_test.R (332 bytes security) (deflated 84%)
adding: unitTests/checkGenotypeFile_test.R (332 bytes security) (deflated 87%)
adding: unitTests/checkImputedDosageFile_test.R (332 bytes security) (deflated 91%)
adding: unitTests/checkIntensityFile_test.R (332 bytes security) (deflated 83%)
adding: unitTests/chromIntensityPlot_test.R (332 bytes security) (deflated 73%)
adding: unitTests/convertNcdfGds_test.R (332 bytes security) (deflated 81%)
adding: unitTests/createAffyIntensityFile_test.R (332 bytes security) (deflated 80%)
adding: unitTests/createDataFile_test.R (332 bytes security) (deflated 88%)
adding: unitTests/dupDosageCorAcrossDatasets_test.R (332 bytes security) (deflated 75%)
adding: unitTests/duplicateDiscordanceAcrossDatasets_test.R (332 bytes security) (deflated 88%)
adding: unitTests/duplicateDiscordance_test.R (332 bytes security) (deflated 80%)
adding: unitTests/exactHWE_test.R (332 bytes security) (deflated 70%)
adding: unitTests/findBAFvariance_test.R (332 bytes security) (deflated 63%)
adding: unitTests/GdsGenotypeReader_test.R (332 bytes security) (deflated 85%)
adding: unitTests/GdsIntensityReader_test.R (332 bytes security) (deflated 65%)
adding: unitTests/GdsReader_test.R (332 bytes security) (deflated 76%)
adding: unitTests/gdsSubsetCheck_test.R (332 bytes security) (deflated 88%)
adding: unitTests/gdsSubset_test.R (332 bytes security) (deflated 94%)
adding: unitTests/GenotypeData_test.R (332 bytes security) (deflated 81%)
adding: unitTests/genotypeToCharacter_test.R (332 bytes security) (deflated 73%)
adding: unitTests/getobj_test.R (332 bytes security) (deflated 26%)
adding: unitTests/hetByScanChrom_test.R (332 bytes security) (deflated 69%)
adding: unitTests/hetBySnpSex_test.R (332 bytes security) (deflated 66%)
adding: unitTests/ibdPlot_test.R (332 bytes security) (deflated 57%)
adding: unitTests/imputedDosageFile_test.R (332 bytes security) (deflated 90%)
adding: unitTests/IntensityData_test.R (332 bytes security) (deflated 70%)
adding: unitTests/MatrixGenotypeReader_test.R (332 bytes security) (deflated 70%)
adding: unitTests/meanIntensityByScanChrom_test.R (332 bytes security) (deflated 76%)
adding: unitTests/missingGenotypeByScanChrom_test.R (332 bytes security) (deflated 68%)
adding: unitTests/missingGenotypeBySnpSex_test.R (332 bytes security) (deflated 71%)
adding: unitTests/NcdfGenotypeReader_test.R (332 bytes security) (deflated 68%)
adding: unitTests/NcdfIntensityReader_test.R (332 bytes security) (deflated 69%)
adding: unitTests/NcdfReader_test.R (332 bytes security) (deflated 66%)
adding: unitTests/pedigreeCheck_test.R (332 bytes security) (deflated 76%)
adding: unitTests/pedigreeMaxUnrelated_test.R (332 bytes security) (deflated 86%)
adding: unitTests/pedigreePairwiseRelatedness_test.R (332 bytes security) (deflated 78%)
adding: unitTests/plinkUtils_test.R (332 bytes security) (deflated 81%)
adding: unitTests/pseudoautoIntensityPlot_test.R (332 bytes security) (deflated 49%)
adding: unitTests/qualityScoreByScan_test.R (332 bytes security) (deflated 65%)
adding: unitTests/qualityScoreBySnp_test.R (332 bytes security) (deflated 69%)
adding: unitTests/saveas_test.R (332 bytes security) (deflated 63%)
adding: unitTests/ScanAnnotationDataFrame_test.R (332 bytes security) (deflated 64%)
adding: unitTests/ScanAnnotationSQLite_test.R (332 bytes security) (deflated 67%)
adding: unitTests/setMissingGenotypes_test.R (332 bytes security) (deflated 69%)
adding: unitTests/SnpAnnotationDataFrame_test.R (332 bytes security) (deflated 72%)
adding: unitTests/SnpAnnotationSQLite_test.R (332 bytes security) (deflated 68%)
adding: unitTests/snpStats_test.R (332 bytes security) (deflated 62%)
adding: unitTests/vcfWrite_test.R (332 bytes security) (deflated 83%)