Back to the "Multiple platform build/check report" A  B [C] D  E  F  G  H  I  J  K  L  M  N  O  P  Q  R  S  T  U  V  W  X  Y  Z 

BioC 3.6: BUILD BIN report for CAMERA on veracruz1

This page was generated on 2017-08-16 13:40:29 -0400 (Wed, 16 Aug 2017).

Package 166/1410HostnameOS / ArchINSTALLBUILDCHECKBUILD BIN
CAMERA 1.33.0
Steffen Neumann
Snapshot Date: 2017-08-15 17:18:21 -0400 (Tue, 15 Aug 2017)
URL: https://hedgehog.fhcrc.org/bioconductor/trunk/madman/Rpacks/CAMERA
Last Changed Rev: 129129 / Revision: 131943
Last Changed Date: 2017-04-24 15:50:57 -0400 (Mon, 24 Apr 2017)
malbec1 Linux (Ubuntu 16.04.1 LTS) / x86_64  OK  OK  OK UNNEEDED, same version exists in internal repository
tokay1 Windows Server 2012 R2 Standard / x64  OK  OK  OK  OK UNNEEDED, same version exists in internal repository
veracruz1 OS X 10.11.6 El Capitan / x86_64  OK  OK  OK [ OK ]UNNEEDED, same version exists in internal repository

Summary

Package: CAMERA
Version: 1.33.0
Command: rm -rf CAMERA.buildbin-libdir && mkdir CAMERA.buildbin-libdir && /Users/biocbuild/BBS/utils/build-universal.sh CAMERA_1.33.0.tar.gz /Library/Frameworks/R.framework/Versions/Current/Resources/bin/R CAMERA.buildbin-libdir
StartedAt: 2017-08-16 09:58:15 -0400 (Wed, 16 Aug 2017)
EndedAt: 2017-08-16 09:58:37 -0400 (Wed, 16 Aug 2017)
EllapsedTime: 22.1 seconds
RetCode: 0
Status:  OK 
PackageFile: CAMERA_1.33.0.tgz
PackageFileSize: 2.6 MiB

Command output

##############################################################################
##############################################################################
###
### Running command:
###
###   rm -rf CAMERA.buildbin-libdir && mkdir CAMERA.buildbin-libdir && /Users/biocbuild/BBS/utils/build-universal.sh CAMERA_1.33.0.tar.gz /Library/Frameworks/R.framework/Versions/Current/Resources/bin/R CAMERA.buildbin-libdir
###
##############################################################################
##############################################################################


>>>>>>> 
>>>>>>> INSTALLATION WITH 'R CMD INSTALL --preclean --no-multiarch --library=CAMERA.buildbin-libdir CAMERA_1.33.0.tar.gz'
>>>>>>> 

* installing *source* package ‘CAMERA’ ...
** libs
clang -I/Library/Frameworks/R.framework/Resources/include -DNDEBUG   -I/usr/local/include   -fPIC  -Wall -g -O2  -c fastMatch.c -o fastMatch.o
clang -dynamiclib -Wl,-headerpad_max_install_names -undefined dynamic_lookup -single_module -multiply_defined suppress -L/Library/Frameworks/R.framework/Resources/lib -L/usr/local/lib -o CAMERA.so fastMatch.o -F/Library/Frameworks/R.framework/.. -framework R -Wl,-framework -Wl,CoreFoundation
installing to /Users/biocbuild/bbs-3.6-bioc/meat/CAMERA.buildbin-libdir/CAMERA/libs
** R
** data
** inst
** byte-compile and prepare package for lazy loading
** help
*** installing help indices
** building package indices
** installing vignettes
** testing if installed package can be loaded
* DONE (CAMERA)


>>>>>>> 
>>>>>>> FIXING LINKS FOR CAMERA.buildbin-libdir/CAMERA/libs//CAMERA.so
>>>>>>> 

install_name_tool -change "/usr/local/lib/libgcc_s.1.dylib" "/Library/Frameworks/R.framework/Versions/3.4/Resources/lib/libgcc_s.1.dylib" "CAMERA.buildbin-libdir/CAMERA/libs//CAMERA.so"
install_name_tool -change "/usr/local/lib/libgfortran.3.dylib" "/Library/Frameworks/R.framework/Versions/3.4/Resources/lib/libgfortran.3.dylib" "CAMERA.buildbin-libdir/CAMERA/libs//CAMERA.so"
install_name_tool -change "/usr/local/lib/libreadline.5.2.dylib" "/Library/Frameworks/R.framework/Versions/3.4/Resources/lib/libreadline.5.2.dylib" "CAMERA.buildbin-libdir/CAMERA/libs//CAMERA.so"
install_name_tool -change "/usr/local/lib/libreadline.dylib" "/Library/Frameworks/R.framework/Versions/3.4/Resources/lib/libreadline.dylib" "CAMERA.buildbin-libdir/CAMERA/libs//CAMERA.so"
install_name_tool -change "/usr/local/lib/libquadmath.0.dylib" "/Library/Frameworks/R.framework/Versions/3.4/Resources/lib/libquadmath.0.dylib" "CAMERA.buildbin-libdir/CAMERA/libs//CAMERA.so"