BioC experimental data: CHECK report for RTCGA.mRNA on malbec2
This page was generated on 2017-10-18 15:09:48 -0400 (Wed, 18 Oct 2017).
RTCGA.mRNA 1.4.0 Marcin Kosinski
Snapshot Date: 2017-10-18 09:00:07 -0400 (Wed, 18 Oct 2017) | URL: https://git.bioconductor.org/packages/RTCGA.mRNA | Branch: RELEASE_3_5 | Last Commit: 053265c | Last Changed Date: 2017-08-16 14:42:17 -0400 (Wed, 16 Aug 2017) |
| malbec2 | Linux (Ubuntu 16.04.1 LTS) / x86_64 | NotNeeded | OK | [ OK ] | | |
Summary
Package: RTCGA.mRNA |
Version: 1.4.0 |
Command: /home/biocbuild/bbs-3.5-bioc/R/bin/R CMD check --no-vignettes --timings RTCGA.mRNA_1.4.0.tar.gz |
StartedAt: 2017-10-18 11:08:07 -0400 (Wed, 18 Oct 2017) |
EndedAt: 2017-10-18 11:10:12 -0400 (Wed, 18 Oct 2017) |
EllapsedTime: 125.4 seconds |
RetCode: 0 |
Status: OK |
CheckDir: RTCGA.mRNA.Rcheck |
Warnings: 0 |
Command output
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### Running command:
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### /home/biocbuild/bbs-3.5-bioc/R/bin/R CMD check --no-vignettes --timings RTCGA.mRNA_1.4.0.tar.gz
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* using log directory ‘/home/biocbuild/bbs-3.5-data-experiment/meat/RTCGA.mRNA.Rcheck’
* using R version 3.4.2 (2017-09-28)
* using platform: x86_64-pc-linux-gnu (64-bit)
* using session charset: UTF-8
* using option ‘--no-vignettes’
* checking for file ‘RTCGA.mRNA/DESCRIPTION’ ... OK
* checking extension type ... Package
* this is package ‘RTCGA.mRNA’ version ‘1.4.0’
* checking package namespace information ... OK
* checking package dependencies ... OK
* checking if this is a source package ... OK
* checking if there is a namespace ... OK
* checking for hidden files and directories ... OK
* checking for portable file names ... OK
* checking for sufficient/correct file permissions ... OK
* checking whether package ‘RTCGA.mRNA’ can be installed ... OK
* checking installed package size ... NOTE
installed size is 130.4Mb
sub-directories of 1Mb or more:
data 130.3Mb
* checking package directory ... OK
* checking ‘build’ directory ... OK
* checking DESCRIPTION meta-information ... OK
* checking top-level files ... OK
* checking for left-over files ... OK
* checking index information ... OK
* checking package subdirectories ... OK
* checking R files for non-ASCII characters ... OK
* checking R files for syntax errors ... OK
* checking whether the package can be loaded ... OK
* checking whether the package can be loaded with stated dependencies ... OK
* checking whether the package can be unloaded cleanly ... OK
* checking whether the namespace can be loaded with stated dependencies ... OK
* checking whether the namespace can be unloaded cleanly ... OK
* checking dependencies in R code ... OK
* checking S3 generic/method consistency ... OK
* checking replacement functions ... OK
* checking foreign function calls ... OK
* checking R code for possible problems ... OK
* checking Rd files ... OK
* checking Rd metadata ... OK
* checking Rd cross-references ... OK
* checking for missing documentation entries ... OK
* checking for code/documentation mismatches ... OK
* checking Rd \usage sections ... OK
* checking Rd contents ... OK
* checking for unstated dependencies in examples ... OK
* checking contents of ‘data’ directory ... OK
* checking data for non-ASCII characters ... OK
* checking data for ASCII and uncompressed saves ... OK
* checking installed files from ‘inst/doc’ ... OK
* checking files in ‘vignettes’ ... OK
* checking examples ... OK
* checking for unstated dependencies in vignettes ... OK
* checking package vignettes in ‘inst/doc’ ... OK
* checking running R code from vignettes ... SKIPPED
* checking re-building of vignette outputs ... SKIPPED
* checking PDF version of manual ... OK
* DONE
Status: 1 NOTE
See
‘/home/biocbuild/bbs-3.5-data-experiment/meat/RTCGA.mRNA.Rcheck/00check.log’
for details.
RTCGA.mRNA.Rcheck/00install.out:
* installing *source* package ‘RTCGA.mRNA’ ...
** R
** data
*** moving datasets to lazyload DB
** inst
** preparing package for lazy loading
** help
*** installing help indices
** building package indices
** installing vignettes
** testing if installed package can be loaded
* DONE (RTCGA.mRNA)
RTCGA.mRNA.Rcheck/RTCGA.mRNA-Ex.timings:
name | user | system | elapsed
|
mRNA | 0.000 | 0.000 | 0.001 |
|