BioC experimental data: CHECK report for KEGGandMetacoreDzPathwaysGEO on malbec2

Package: KEGGandMetacoreDzPathwaysGEO

Version: 0.110.0

Command: /home/biocbuild/bbs-3.5-bioc/R/bin/R CMD check --no-vignettes --timings KEGGandMetacoreDzPathwaysGEO_0.110.0.tar.gz

StartedAt: 2017-10-18 10:53:14 -0400 (Wed, 18 Oct 2017)

EndedAt: 2017-10-18 10:53:54 -0400 (Wed, 18 Oct 2017)

EllapsedTime: 40.7 seconds

RetCode: 0

Status:  OK

CheckDir: KEGGandMetacoreDzPathwaysGEO.Rcheck

Warnings: 0

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### Running command:
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###   /home/biocbuild/bbs-3.5-bioc/R/bin/R CMD check --no-vignettes --timings KEGGandMetacoreDzPathwaysGEO_0.110.0.tar.gz
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* using log directory ‘/home/biocbuild/bbs-3.5-data-experiment/meat/KEGGandMetacoreDzPathwaysGEO.Rcheck’
* using R version 3.4.2 (2017-09-28)
* using platform: x86_64-pc-linux-gnu (64-bit)
* using session charset: UTF-8
* using option ‘--no-vignettes’
* checking for file ‘KEGGandMetacoreDzPathwaysGEO/DESCRIPTION’ ... OK
* checking extension type ... Package
* this is package ‘KEGGandMetacoreDzPathwaysGEO’ version ‘0.110.0’
* checking package namespace information ... OK
* checking package dependencies ... OK
* checking if this is a source package ... OK
* checking if there is a namespace ... OK
* checking for hidden files and directories ... OK
* checking for portable file names ... OK
* checking for sufficient/correct file permissions ... OK
* checking whether package ‘KEGGandMetacoreDzPathwaysGEO’ can be installed ... OK
* checking installed package size ... NOTE
  installed size is 98.8Mb
  sub-directories of 1Mb or more:
    data  98.5Mb
* checking package directory ... OK
* checking ‘build’ directory ... OK
* checking DESCRIPTION meta-information ... OK
* checking top-level files ... OK
* checking for left-over files ... OK
* checking index information ... OK
* checking package subdirectories ... OK
* checking whether the package can be loaded ... OK
* checking whether the package can be loaded with stated dependencies ... OK
* checking whether the package can be unloaded cleanly ... OK
* checking whether the namespace can be loaded with stated dependencies ... OK
* checking whether the namespace can be unloaded cleanly ... OK
* checking loading without being on the library search path ... OK
* checking Rd files ... OK
* checking Rd metadata ... OK
* checking Rd cross-references ... OK
* checking for missing documentation entries ... OK
* checking for code/documentation mismatches ... OK
* checking Rd \usage sections ... OK
* checking Rd contents ... OK
* checking for unstated dependencies in examples ... OK
* checking contents of ‘data’ directory ... OK
* checking data for non-ASCII characters ... OK
* checking data for ASCII and uncompressed saves ... OK
* checking installed files from ‘inst/doc’ ... OK
* checking files in ‘vignettes’ ... OK
* checking examples ... OK
* checking for unstated dependencies in vignettes ... OK
* checking package vignettes in ‘inst/doc’ ... OK
* checking running R code from vignettes ... SKIPPED
* checking re-building of vignette outputs ... SKIPPED
* checking PDF version of manual ... OK
* DONE

Status: 1 NOTE
See
  ‘/home/biocbuild/bbs-3.5-data-experiment/meat/KEGGandMetacoreDzPathwaysGEO.Rcheck/00check.log’
for details.

* installing *source* package ‘KEGGandMetacoreDzPathwaysGEO’ ...
** data
** inst
** help
*** installing help indices
** building package indices
** installing vignettes
** testing if installed package can be loaded
* DONE (KEGGandMetacoreDzPathwaysGEO)

name	user	system	elapsed
GSE1145	0.380	0.004	0.386
GSE11906	3.076	0.016	3.091
GSE14924_CD4	0.284	0.004	0.286
GSE14924_CD8	0.244	0.008	0.253
GSE16759	0.316	0.004	0.318
GSE19420	0.220	0.004	0.223
GSE20164	0.064	0.000	0.066
GSE22780	0.204	0.000	0.201
GSE23878	0.772	0.004	0.777
GSE24739_G0	0.44	0.00	0.44
GSE24739_G1	0.436	0.008	0.446
GSE30153	0.564	0.000	0.564
GSE32676	0.724	0.000	0.726
GSE38666_epithelia	0.316	0.000	0.318
GSE38666_stroma	0.204	0.008	0.211
GSE4183	0.244	0.004	0.248
GSE42057	0.956	0.004	0.961
GSE7305	0.672	0.008	0.682
KEGGandMetacoreDzPathwaysGEO-package	0.928	0.008	0.940