BioC experimental data: CHECK report for pRolocdata on malbec2

Package: pRolocdata

Version: 1.14.0

Command: /home/biocbuild/bbs-3.5-bioc/R/bin/R CMD check --no-vignettes --timings pRolocdata_1.14.0.tar.gz

StartedAt: 2017-10-18 11:01:25 -0400 (Wed, 18 Oct 2017)

EndedAt: 2017-10-18 11:04:02 -0400 (Wed, 18 Oct 2017)

EllapsedTime: 157.4 seconds

RetCode: 0

Status:  WARNINGS

CheckDir: pRolocdata.Rcheck

Warnings: 1

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### Running command:
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###   /home/biocbuild/bbs-3.5-bioc/R/bin/R CMD check --no-vignettes --timings pRolocdata_1.14.0.tar.gz
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* using log directory ‘/home/biocbuild/bbs-3.5-data-experiment/meat/pRolocdata.Rcheck’
* using R version 3.4.2 (2017-09-28)
* using platform: x86_64-pc-linux-gnu (64-bit)
* using session charset: UTF-8
* using option ‘--no-vignettes’
* checking for file ‘pRolocdata/DESCRIPTION’ ... OK
* checking extension type ... Package
* this is package ‘pRolocdata’ version ‘1.14.0’
* checking package namespace information ... OK
* checking package dependencies ... OK
* checking if this is a source package ... OK
* checking if there is a namespace ... OK
* checking for hidden files and directories ... OK
* checking for portable file names ... OK
* checking for sufficient/correct file permissions ... OK
* checking whether package ‘pRolocdata’ can be installed ... OK
* checking installed package size ... NOTE
  installed size is 121.7Mb
  sub-directories of 1Mb or more:
    data     39.3Mb
    extdata  82.1Mb
* checking package directory ... OK
* checking DESCRIPTION meta-information ... OK
* checking top-level files ... OK
* checking for left-over files ... OK
* checking index information ... OK
* checking package subdirectories ... OK
* checking R files for non-ASCII characters ... OK
* checking R files for syntax errors ... OK
* checking whether the package can be loaded ... OK
* checking whether the package can be loaded with stated dependencies ... OK
* checking whether the package can be unloaded cleanly ... OK
* checking whether the namespace can be loaded with stated dependencies ... OK
* checking whether the namespace can be unloaded cleanly ... OK
* checking dependencies in R code ... OK
* checking S3 generic/method consistency ... OK
* checking replacement functions ... OK
* checking foreign function calls ... OK
* checking R code for possible problems ... OK
* checking Rd files ... OK
* checking Rd metadata ... OK
* checking Rd cross-references ... OK
* checking for missing documentation entries ... WARNING
Undocumented data sets:
  ‘hyperLOPITU2OS2017’ ‘hyperLOPITU2OS2017b’
All user-level objects in a package should have documentation entries.
See chapter ‘Writing R documentation files’ in the ‘Writing R
Extensions’ manual.
* checking for code/documentation mismatches ... OK
* checking Rd \usage sections ... OK
* checking Rd contents ... OK
* checking for unstated dependencies in examples ... OK
* checking contents of ‘data’ directory ... OK
* checking data for non-ASCII characters ... OK
* checking data for ASCII and uncompressed saves ... OK
* checking examples ... OK
Examples with CPU or elapsed time > 5s
                user system elapsed
andreyev2010   6.296  0.168   9.283
hyperLOPIT2015 5.272  0.032   5.306
* checking for unstated dependencies in ‘tests’ ... OK
* checking tests ...
  Running ‘testthat.R’
 OK
* checking PDF version of manual ... OK
* DONE

Status: 1 WARNING, 1 NOTE
See
  ‘/home/biocbuild/bbs-3.5-data-experiment/meat/pRolocdata.Rcheck/00check.log’
for details.

* installing *source* package ‘pRolocdata’ ...
** R
** data
** inst
** preparing package for lazy loading
** help
*** installing help indices
** building package indices
** testing if installed package can be loaded
* DONE (pRolocdata)

name	user	system	elapsed
E14TG2a	0.072	0.008	0.081
andreyev2010	6.296	0.168	9.283
andy2011	0.080	0.004	0.085
at_chloro	0.648	0.000	0.646
dunkley2006	0.028	0.000	0.027
fabre2015	0.336	0.004	0.340
foster2006	0.032	0.000	0.034
groen2014	2.528	0.012	2.542
hall2009	0.184	0.004	0.192
havugimana2012	0.556	0.004	0.561
hyperLOPIT2015	5.272	0.032	5.306
itzhak2016	0.596	0.004	0.598
kirkwood2013	0.040	0.000	0.043
kristensen2012	0.024	0.000	0.024
lopimsSyn2	0.320	0.008	0.329
mulvey2015	4.300	0.016	4.327
nikolovski2012	0.440	0.008	0.451
nikolovski2014	0.352	0.008	0.360
pRolocdata	0.012	0.016	0.038
pRolocmetadata	0.016	0.004	0.022
rodriguez2012r1	0.448	0.032	0.481
stekhoven2014	0.344	0.012	0.358
tan2009	0.016	0.000	0.016
trotter2010	0.308	0.004	0.313