BioC 3.5: CHECK report for variancePartition on tokay2

Package: variancePartition

Version: 1.6.0

Command: rm -rf variancePartition.buildbin-libdir variancePartition.Rcheck && mkdir variancePartition.buildbin-libdir variancePartition.Rcheck && C:\Users\biocbuild\bbs-3.5-bioc\R\bin\R.exe CMD INSTALL --build --merge-multiarch --library=variancePartition.buildbin-libdir variancePartition_1.6.0.tar.gz >variancePartition.Rcheck\00install.out 2>&1 && cp variancePartition.Rcheck\00install.out variancePartition-install.out && C:\Users\biocbuild\bbs-3.5-bioc\R\bin\R.exe CMD check --library=variancePartition.buildbin-libdir --install="check:variancePartition-install.out" --force-multiarch --no-vignettes --timings variancePartition_1.6.0.tar.gz

StartedAt: 2017-10-18 03:33:31 -0400 (Wed, 18 Oct 2017)

EndedAt: 2017-10-18 03:35:37 -0400 (Wed, 18 Oct 2017)

EllapsedTime: 125.6 seconds

RetCode: 1

Status:  ERROR

CheckDir: variancePartition.Rcheck

Warnings: NA

##############################################################################
##############################################################################
###
### Running command:
###
###   rm -rf variancePartition.buildbin-libdir variancePartition.Rcheck && mkdir variancePartition.buildbin-libdir variancePartition.Rcheck && C:\Users\biocbuild\bbs-3.5-bioc\R\bin\R.exe CMD INSTALL --build --merge-multiarch --library=variancePartition.buildbin-libdir variancePartition_1.6.0.tar.gz >variancePartition.Rcheck\00install.out 2>&1 && cp variancePartition.Rcheck\00install.out variancePartition-install.out  &&  C:\Users\biocbuild\bbs-3.5-bioc\R\bin\R.exe CMD check --library=variancePartition.buildbin-libdir --install="check:variancePartition-install.out" --force-multiarch --no-vignettes --timings variancePartition_1.6.0.tar.gz
###
##############################################################################
##############################################################################


* using log directory 'C:/Users/biocbuild/bbs-3.5-bioc/meat/variancePartition.Rcheck'
* using R version 3.4.2 Patched (2017-10-07 r73498)
* using platform: x86_64-w64-mingw32 (64-bit)
* using session charset: ISO8859-1
* using option '--no-vignettes'
* checking for file 'variancePartition/DESCRIPTION' ... OK
* checking extension type ... Package
* this is package 'variancePartition' version '1.6.0'
* checking package namespace information ... OK
* checking package dependencies ... OK
* checking if this is a source package ... OK
* checking if there is a namespace ... OK
* checking for hidden files and directories ... OK
* checking for portable file names ... OK
* checking whether package 'variancePartition' can be installed ... OK
* checking installed package size ... OK
* checking package directory ... OK
* checking 'build' directory ... OK
* checking DESCRIPTION meta-information ... OK
* checking top-level files ... OK
* checking for left-over files ... OK
* checking index information ... OK
* checking package subdirectories ... OK
* checking R files for non-ASCII characters ... OK
* checking R files for syntax errors ... OK
* loading checks for arch 'i386'
** checking whether the package can be loaded ... OK
** checking whether the package can be loaded with stated dependencies ... OK
** checking whether the package can be unloaded cleanly ... OK
** checking whether the namespace can be loaded with stated dependencies ... OK
** checking whether the namespace can be unloaded cleanly ... OK
** checking loading without being on the library search path ... OK
* loading checks for arch 'x64'
** checking whether the package can be loaded ... OK
** checking whether the package can be loaded with stated dependencies ... OK
** checking whether the package can be unloaded cleanly ... OK
** checking whether the namespace can be loaded with stated dependencies ... OK
** checking whether the namespace can be unloaded cleanly ... OK
** checking loading without being on the library search path ... OK
* checking dependencies in R code ... OK
* checking S3 generic/method consistency ... OK
* checking replacement functions ... OK
* checking foreign function calls ... OK
* checking R code for possible problems ... OK
* checking Rd files ... OK
* checking Rd metadata ... OK
* checking Rd cross-references ... OK
* checking for missing documentation entries ... OK
* checking for code/documentation mismatches ... OK
* checking Rd \usage sections ... OK
* checking Rd contents ... OK
* checking for unstated dependencies in examples ... OK
* checking contents of 'data' directory ... OK
* checking data for non-ASCII characters ... OK
* checking data for ASCII and uncompressed saves ... OK
* checking installed files from 'inst/doc' ... OK
* checking files in 'vignettes' ... OK
* checking examples ...
** running examples for arch 'i386' ... ERROR
Running examples in 'variancePartition-Ex.R' failed
Warning in file(con, "r") :
  cannot open file '../variancePartition-Ex_i386.Rout': Permission denied
Error in file(con, "r") : cannot open the connection
Execution halted

install for i386

* installing *source* package 'variancePartition' ...
** R
** data
** inst
** preparing package for lazy loading
** help
*** installing help indices
** building package indices
** installing vignettes
** testing if installed package can be loaded

install for x64

* installing *source* package 'variancePartition' ...
** testing if installed package can be loaded
* MD5 sums
packaged installation of 'variancePartition' as variancePartition_1.6.0.zip
* DONE (variancePartition)

name	user	system	elapsed
ESS-method	0.81	0.00	0.89
as.matrix-varPartResults-method	1.31	0.00	1.31
calcVarPart-method	0.19	0.01	0.20
canCorPairs	0.29	0.00	0.30
colinearityScore	0.49	0.02	0.50