BioC 3.5: CHECK report for trackViewer on tokay2

Package: trackViewer

Version: 1.12.0

Command: rm -rf trackViewer.buildbin-libdir trackViewer.Rcheck && mkdir trackViewer.buildbin-libdir trackViewer.Rcheck && C:\Users\biocbuild\bbs-3.5-bioc\R\bin\R.exe CMD INSTALL --build --merge-multiarch --library=trackViewer.buildbin-libdir trackViewer_1.12.0.tar.gz >trackViewer.Rcheck\00install.out 2>&1 && cp trackViewer.Rcheck\00install.out trackViewer-install.out && C:\Users\biocbuild\bbs-3.5-bioc\R\bin\R.exe CMD check --library=trackViewer.buildbin-libdir --install="check:trackViewer-install.out" --force-multiarch --no-vignettes --timings trackViewer_1.12.0.tar.gz

StartedAt: 2017-10-18 03:26:23 -0400 (Wed, 18 Oct 2017)

EndedAt: 2017-10-18 03:35:31 -0400 (Wed, 18 Oct 2017)

EllapsedTime: 547.7 seconds

RetCode: 0

Status:  OK

CheckDir: trackViewer.Rcheck

Warnings: 0

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### Running command:
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###   rm -rf trackViewer.buildbin-libdir trackViewer.Rcheck && mkdir trackViewer.buildbin-libdir trackViewer.Rcheck && C:\Users\biocbuild\bbs-3.5-bioc\R\bin\R.exe CMD INSTALL --build --merge-multiarch --library=trackViewer.buildbin-libdir trackViewer_1.12.0.tar.gz >trackViewer.Rcheck\00install.out 2>&1 && cp trackViewer.Rcheck\00install.out trackViewer-install.out  &&  C:\Users\biocbuild\bbs-3.5-bioc\R\bin\R.exe CMD check --library=trackViewer.buildbin-libdir --install="check:trackViewer-install.out" --force-multiarch --no-vignettes --timings trackViewer_1.12.0.tar.gz
###
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* using log directory 'C:/Users/biocbuild/bbs-3.5-bioc/meat/trackViewer.Rcheck'
* using R version 3.4.2 Patched (2017-10-07 r73498)
* using platform: x86_64-w64-mingw32 (64-bit)
* using session charset: ISO8859-1
* using option '--no-vignettes'
* checking for file 'trackViewer/DESCRIPTION' ... OK
* checking extension type ... Package
* this is package 'trackViewer' version '1.12.0'
* checking package namespace information ... OK
* checking package dependencies ... OK
* checking if this is a source package ... OK
* checking if there is a namespace ... OK
* checking for hidden files and directories ... OK
* checking for portable file names ... OK
* checking whether package 'trackViewer' can be installed ... OK
* checking installed package size ... OK
* checking package directory ... OK
* checking 'build' directory ... OK
* checking DESCRIPTION meta-information ... OK
* checking top-level files ... OK
* checking for left-over files ... OK
* checking index information ... OK
* checking package subdirectories ... OK
* checking R files for non-ASCII characters ... OK
* checking R files for syntax errors ... OK
* loading checks for arch 'i386'
** checking whether the package can be loaded ... OK
** checking whether the package can be loaded with stated dependencies ... OK
** checking whether the package can be unloaded cleanly ... OK
** checking whether the namespace can be loaded with stated dependencies ... OK
** checking whether the namespace can be unloaded cleanly ... OK
* loading checks for arch 'x64'
** checking whether the package can be loaded ... OK
** checking whether the package can be loaded with stated dependencies ... OK
** checking whether the package can be unloaded cleanly ... OK
** checking whether the namespace can be loaded with stated dependencies ... OK
** checking whether the namespace can be unloaded cleanly ... OK
* checking dependencies in R code ... OK
* checking S3 generic/method consistency ... OK
* checking replacement functions ... OK
* checking foreign function calls ... OK
* checking R code for possible problems ... OK
* checking Rd files ... OK
* checking Rd metadata ... OK
* checking Rd cross-references ... OK
* checking for missing documentation entries ... OK
* checking for code/documentation mismatches ... OK
* checking Rd \usage sections ... OK
* checking Rd contents ... OK
* checking for unstated dependencies in examples ... OK
* checking installed files from 'inst/doc' ... OK
* checking files in 'vignettes' ... OK
* checking examples ...
** running examples for arch 'i386' ... OK
Examples with CPU or elapsed time > 5s
                     user system elapsed
trackViewer-package 15.95   0.10   16.05
parseWIG            10.64   0.06   10.74
geneModelFromTxdb    9.92   0.40   10.31
viewTracks           8.69   0.01    8.70
** running examples for arch 'x64' ... OK
Examples with CPU or elapsed time > 5s
                     user system elapsed
trackViewer-package 19.21   0.14   19.35
parseWIG            11.52   0.03   11.54
viewTracks          11.22   0.00   11.21
geneModelFromTxdb   10.21   0.34   10.57
* checking for unstated dependencies in 'tests' ... OK
* checking tests ...
** running tests for arch 'i386' ...
  Running 'runTests.R'
 OK
** running tests for arch 'x64' ...
  Running 'runTests.R'
 OK
* checking for unstated dependencies in vignettes ... OK
* checking package vignettes in 'inst/doc' ... OK
* checking running R code from vignettes ... SKIPPED
* checking re-building of vignette outputs ... SKIPPED
* checking PDF version of manual ... OK
* DONE

Status: OK

install for i386

* installing *source* package 'trackViewer' ...
** R
** inst
** preparing package for lazy loading
** help
*** installing help indices
** building package indices
** installing vignettes
** testing if installed package can be loaded

install for x64

* installing *source* package 'trackViewer' ...
** testing if installed package can be loaded
* MD5 sums
packaged installation of 'trackViewer' as trackViewer_1.12.0.zip
* DONE (trackViewer)

name	user	system	elapsed
GRoperator	1.47	0.00	1.47
addArrowMark	0	0	0
addGuideLine	0	0	0
coverageGR	0.29	0.02	0.32
dandelion.plot	1.47	0.04	1.51
geneModelFromTxdb	9.92	0.40	10.31
getCurTrackViewport	0.05	0.00	0.05
ideogramPlot	0	0	0
importBam	0.39	0.01	0.40
importData	2.09	0.02	2.19
importScore	0.83	0.00	0.83
loadIdeogram	0	0	0
lolliplot	1.36	0.00	2.48
optimizeStyle	1.17	0.06	1.88
parse2GRanges	0.02	0.00	0.01
parseWIG	10.64	0.06	10.74
plotGRanges	1.23	0.00	1.23
track	0.05	0.00	0.05
trackViewer-package	15.95	0.10	16.05
trackViewerStyle	0	0	0
viewTracks	8.69	0.01	8.70

name	user	system	elapsed
GRoperator	1.57	0.02	1.59
addArrowMark	0.02	0.00	0.02
addGuideLine	0	0	0
coverageGR	0.33	0.00	0.33
dandelion.plot	1.96	0.00	1.96
geneModelFromTxdb	10.21	0.34	10.57
getCurTrackViewport	0.08	0.00	0.08
ideogramPlot	0	0	0
importBam	0.49	0.00	0.49
importData	2.47	0.02	2.48
importScore	0.71	0.01	0.74
loadIdeogram	0	0	0
lolliplot	1.19	0.00	1.18
optimizeStyle	0.81	0.02	0.83
parse2GRanges	0.02	0.00	0.02
parseWIG	11.52	0.03	11.54
plotGRanges	1.5	0.0	1.5
track	0.07	0.00	0.08
trackViewer-package	19.21	0.14	19.35
trackViewerStyle	0	0	0
viewTracks	11.22	0.00	11.21