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BioC 3.5: BUILD BIN report for sva on veracruz2

This page was generated on 2017-10-18 14:30:07 -0400 (Wed, 18 Oct 2017).

Package 1290/1381HostnameOS / ArchINSTALLBUILDCHECKBUILD BIN
sva 3.24.4
Jeffrey T. Leek , John D. Storey
Snapshot Date: 2017-10-17 17:00:52 -0400 (Tue, 17 Oct 2017)
URL: https://git.bioconductor.org/packages/sva
Branch: RELEASE_3_5
Last Commit: ed2ebb6
Last Changed Date: 2017-06-19 11:01:16 -0400 (Mon, 19 Jun 2017)
malbec2 Linux (Ubuntu 16.04.1 LTS) / x86_64  OK  OK  OK UNNEEDED, same version exists in internal repository
tokay2 Windows Server 2012 R2 Standard / x64  OK  OK  OK  OK UNNEEDED, same version exists in internal repository
veracruz2 OS X 10.11.6 El Capitan / x86_64  OK  OK  OK [ OK ]UNNEEDED, same version exists in internal repository

Summary

Package: sva
Version: 3.24.4
Command: rm -rf sva.buildbin-libdir && mkdir sva.buildbin-libdir && /Users/biocbuild/BBS/utils/build-universal.sh sva_3.24.4.tar.gz /Library/Frameworks/R.framework/Versions/Current/Resources/bin/R sva.buildbin-libdir
StartedAt: 2017-10-18 11:36:14 -0400 (Wed, 18 Oct 2017)
EndedAt: 2017-10-18 11:36:29 -0400 (Wed, 18 Oct 2017)
EllapsedTime: 14.9 seconds
RetCode: 0
Status:  OK 
PackageFile: sva_3.24.4.tgz
PackageFileSize: 391.9 KiB

Command output

##############################################################################
##############################################################################
###
### Running command:
###
###   rm -rf sva.buildbin-libdir && mkdir sva.buildbin-libdir && /Users/biocbuild/BBS/utils/build-universal.sh sva_3.24.4.tar.gz /Library/Frameworks/R.framework/Versions/Current/Resources/bin/R sva.buildbin-libdir
###
##############################################################################
##############################################################################


>>>>>>> 
>>>>>>> INSTALLATION WITH 'R CMD INSTALL --preclean --no-multiarch --library=sva.buildbin-libdir sva_3.24.4.tar.gz'
>>>>>>> 

* installing *source* package ‘sva’ ...
** libs
clang -I/Library/Frameworks/R.framework/Resources/include -DNDEBUG   -I/usr/local/include   -fPIC  -Wall -g -O2  -c sva.c -o sva.o
sva.c:29:3: warning: suggest braces around initialization of subobject [-Wmissing-braces]
  NULL
  ^˜˜˜
  {   }
/usr/local/clang4/bin/../lib/clang/4.0.0/include/stddef.h:105:16: note: expanded from macro 'NULL'
#  define NULL ((void*)0)
               ^˜˜˜˜˜˜˜˜˜
1 warning generated.
clang -dynamiclib -Wl,-headerpad_max_install_names -undefined dynamic_lookup -single_module -multiply_defined suppress -L/Library/Frameworks/R.framework/Resources/lib -L/usr/local/lib -o sva.so sva.o -F/Library/Frameworks/R.framework/.. -framework R -Wl,-framework -Wl,CoreFoundation
installing to /Users/biocbuild/bbs-3.5-bioc/meat/sva.buildbin-libdir/sva/libs
** R
** inst
** preparing package for lazy loading
** help
*** installing help indices
** building package indices
** installing vignettes
** testing if installed package can be loaded
* DONE (sva)


>>>>>>> 
>>>>>>> FIXING LINKS FOR sva.buildbin-libdir/sva/libs//sva.so
>>>>>>> 

install_name_tool -change "/usr/local/lib/libgcc_s.1.dylib" "/Library/Frameworks/R.framework/Versions/3.4/Resources/lib/libgcc_s.1.dylib" "sva.buildbin-libdir/sva/libs//sva.so"
install_name_tool -change "/usr/local/lib/libgfortran.3.dylib" "/Library/Frameworks/R.framework/Versions/3.4/Resources/lib/libgfortran.3.dylib" "sva.buildbin-libdir/sva/libs//sva.so"
install_name_tool -change "/usr/local/lib/libreadline.5.2.dylib" "/Library/Frameworks/R.framework/Versions/3.4/Resources/lib/libreadline.5.2.dylib" "sva.buildbin-libdir/sva/libs//sva.so"
install_name_tool -change "/usr/local/lib/libreadline.dylib" "/Library/Frameworks/R.framework/Versions/3.4/Resources/lib/libreadline.dylib" "sva.buildbin-libdir/sva/libs//sva.so"
install_name_tool -change "/usr/local/lib/libquadmath.0.dylib" "/Library/Frameworks/R.framework/Versions/3.4/Resources/lib/libquadmath.0.dylib" "sva.buildbin-libdir/sva/libs//sva.so"