BioC 3.5: CHECK report for supraHex on veracruz2

Package: supraHex

Version: 1.14.0

Command: /Library/Frameworks/R.framework/Versions/Current/Resources/bin/R CMD check --no-vignettes --timings supraHex_1.14.0.tar.gz

StartedAt: 2017-10-18 09:31:37 -0400 (Wed, 18 Oct 2017)

EndedAt: 2017-10-18 09:32:33 -0400 (Wed, 18 Oct 2017)

EllapsedTime: 55.7 seconds

RetCode: 0

Status:  OK

CheckDir: supraHex.Rcheck

Warnings: 0

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### Running command:
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###   /Library/Frameworks/R.framework/Versions/Current/Resources/bin/R CMD check --no-vignettes --timings supraHex_1.14.0.tar.gz
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* using log directory ‘/Users/biocbuild/bbs-3.5-bioc/meat/supraHex.Rcheck’
* using R version 3.4.2 (2017-09-28)
* using platform: x86_64-apple-darwin15.6.0 (64-bit)
* using session charset: UTF-8
* using option ‘--no-vignettes’
* checking for file ‘supraHex/DESCRIPTION’ ... OK
* checking extension type ... Package
* this is package ‘supraHex’ version ‘1.14.0’
* checking package namespace information ... OK
* checking package dependencies ... OK
* checking if this is a source package ... OK
* checking if there is a namespace ... OK
* checking for hidden files and directories ... OK
* checking for portable file names ... OK
* checking for sufficient/correct file permissions ... OK
* checking whether package ‘supraHex’ can be installed ... OK
* checking installed package size ... OK
* checking package directory ... OK
* checking ‘build’ directory ... OK
* checking DESCRIPTION meta-information ... OK
* checking top-level files ... OK
* checking for left-over files ... OK
* checking index information ... OK
* checking package subdirectories ... OK
* checking R files for non-ASCII characters ... OK
* checking R files for syntax errors ... OK
* checking whether the package can be loaded ... OK
* checking whether the package can be loaded with stated dependencies ... OK
* checking whether the package can be unloaded cleanly ... OK
* checking whether the namespace can be loaded with stated dependencies ... OK
* checking whether the namespace can be unloaded cleanly ... OK
* checking dependencies in R code ... OK
* checking S3 generic/method consistency ... OK
* checking replacement functions ... OK
* checking foreign function calls ... OK
* checking R code for possible problems ... OK
* checking Rd files ... OK
* checking Rd metadata ... OK
* checking Rd cross-references ... OK
* checking for missing documentation entries ... OK
* checking for code/documentation mismatches ... OK
* checking Rd \usage sections ... OK
* checking Rd contents ... OK
* checking for unstated dependencies in examples ... OK
* checking contents of ‘data’ directory ... OK
* checking data for non-ASCII characters ... OK
* checking data for ASCII and uncompressed saves ... OK
* checking sizes of PDF files under ‘inst/doc’ ... OK
* checking installed files from ‘inst/doc’ ... OK
* checking files in ‘vignettes’ ... OK
* checking examples ... OK
* checking for unstated dependencies in vignettes ... OK
* checking package vignettes in ‘inst/doc’ ... OK
* checking running R code from vignettes ... SKIPPED
* checking re-building of vignette outputs ... SKIPPED
* checking PDF version of manual ... OK
* DONE

Status: OK

* installing *source* package ‘supraHex’ ...
** R
** data
** inst
** preparing package for lazy loading
** help
*** installing help indices
** building package indices
** installing vignettes
** testing if installed package can be loaded
* DONE (supraHex)

name	user	system	elapsed
sBMH	0.328	0.006	0.339
sCompReorder	1.462	0.028	1.526
sDistance	0.095	0.002	0.098
sDmat	0.122	0.002	0.126
sDmatCluster	0.224	0.004	0.233
sDmatMinima	0.141	0.004	0.148
sHexDist	0.003	0.000	0.002
sHexGrid	0.002	0.000	0.002
sHexGridVariant	0.003	0.000	0.004
sHexPolygon	0.003	0.000	0.003
sInitial	0.003	0.000	0.003
sMapOverlay	0.452	0.009	0.480
sNeighAny	0.007	0.000	0.006
sNeighDirect	0.004	0.000	0.005
sPipeline	1.618	0.026	1.692
sTopology	0.025	0.006	0.029
sTrainBatch	0.050	0.001	0.052
sTrainSeq	0.368	0.003	0.376
sTrainology	0.003	0.000	0.004
sWriteData	0.301	0.004	0.315
visColoralpha	0.006	0.000	0.006
visColorbar	0.034	0.000	0.035
visColormap	0.005	0.000	0.006
visCompReorder	0.982	0.034	1.070
visDmatCluster	0.286	0.024	0.319
visDmatHeatmap	0.209	0.005	0.226
visHeatmap	0.099	0.002	0.102
visHeatmapAdv	1.207	0.012	1.266
visHexAnimate	0.002	0.000	0.002
visHexBarplot	0.759	0.024	0.801
visHexComp	0.120	0.004	0.126
visHexGrid	0.115	0.003	0.120
visHexMapping	1.292	0.051	1.379
visHexMulComp	0.937	0.031	0.992
visHexPattern	1.688	0.078	1.805
visKernels	0.011	0.005	0.016
visTreeBSclust	1.038	0.008	1.080
visTreeBootstrap	0.828	0.006	0.852
visVp	0.024	0.005	0.031