BioC 3.5: BUILD report for saps on tokay2

Package: saps

Version: 2.10.0

Command: chmod a+r saps -R && C:\Users\biocbuild\bbs-3.5-bioc\R\bin\R.exe CMD build --keep-empty-dirs --no-resave-data saps

StartedAt: 2017-10-17 20:34:01 -0400 (Tue, 17 Oct 2017)

EndedAt: 2017-10-17 20:34:20 -0400 (Tue, 17 Oct 2017)

EllapsedTime: 19.0 seconds

RetCode: 1

Status:  ERROR

PackageFile: None

PackageFileSize: NA

##############################################################################
##############################################################################
###
### Running command:
###
###   chmod a+r saps -R && C:\Users\biocbuild\bbs-3.5-bioc\R\bin\R.exe CMD build --keep-empty-dirs --no-resave-data saps
###
##############################################################################
##############################################################################


* checking for file 'saps/DESCRIPTION' ... OK
* preparing 'saps':
* checking DESCRIPTION meta-information ... OK
* installing the package to build vignettes
* creating vignettes ...Warning: running command '"C:/Users/biocbuild/bbs-3.5-bioc/R/bin/x64/Rscript" --vanilla --default-packages= -e "tools::buildVignettes(dir = '.', tangle = TRUE)"' had status 1
 ERROR
Loading required package: survival
Calculating concordance index...done.
Using gene set set1, size = 5
gene set #1 of 2
Calculating P_pure...done.
Calculating P_random...done.
Calculating P_enrichment...Quitting from lines 76-77 (saps.Rmd) 
Error: processing vignette 'saps.Rmd' failed with diagnostics:
incorrect number of dimensions
Execution halted